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CmaCh08G003100 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh08G003100
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionPSII 6.1 kDa protein
Genome locationCma_Chr08:1763479..1764450
RNA-Seq ExpressionCmaCh08G003100
SyntenyCmaCh08G003100
Gene Ontology termsGO:0042549 - photosystem II stabilization (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009806 - Photosystem II PsbW, class 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593088.1 Photosystem II reaction center W protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]7.0e-6397.84Show/hide
Query:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLL-GLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAVACAAAMSSPAMALVDERLSTEGTGLPF
        MAAVASASAAAVRSSLVQNRPLPAASPTTFLL GLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAA ACAA MSSPAMALVDERLSTEGTGLPF
Subjt:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLL-GLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAVACAAAMSSPAMALVDERLSTEGTGLPF

Query:  GLSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
        GLSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
Subjt:  GLSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL

XP_022959615.1 photosystem II reaction center W protein, chloroplastic-like isoform X1 [Cucurbita moschata]7.0e-6397.84Show/hide
Query:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLL-GLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAVACAAAMSSPAMALVDERLSTEGTGLPF
        MAAVASASAAAVRSSLVQNRPLPAASPTTFLL GLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAA ACAA MSSPAMALVDERLSTEGTGLPF
Subjt:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLL-GLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAVACAAAMSSPAMALVDERLSTEGTGLPF

Query:  GLSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
        GLSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
Subjt:  GLSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL

XP_022959616.1 photosystem II reaction center W protein, chloroplastic-like isoform X2 [Cucurbita moschata]2.9e-6498.55Show/hide
Query:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLLGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAVACAAAMSSPAMALVDERLSTEGTGLPFG
        MAAVASASAAAVRSSLVQNRPLPAASPTTFLLGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAA ACAA MSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLLGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAVACAAAMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL

XP_023004262.1 photosystem II reaction center W protein, chloroplastic-like isoform X1 [Cucurbita maxima]3.4e-6599.28Show/hide
Query:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLL-GLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAVACAAAMSSPAMALVDERLSTEGTGLPF
        MAAVASASAAAVRSSLVQNRPLPAASPTTFLL GLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAVACAAAMSSPAMALVDERLSTEGTGLPF
Subjt:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLL-GLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAVACAAAMSSPAMALVDERLSTEGTGLPF

Query:  GLSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
        GLSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
Subjt:  GLSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL

XP_023004263.1 photosystem II reaction center W protein, chloroplastic-like isoform X2 [Cucurbita maxima]1.4e-66100Show/hide
Query:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLLGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAVACAAAMSSPAMALVDERLSTEGTGLPFG
        MAAVASASAAAVRSSLVQNRPLPAASPTTFLLGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAVACAAAMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLLGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAVACAAAMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL

TrEMBL top hitse value%identityAlignment
A0A6J1GQI7 PSII 6.1 kDa protein1.2e-5586.96Show/hide
Query:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLLGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAVACAAAMSSPAMALVDERLSTEGTGLPFG
        MAAV SA+AA VRSSLVQNRPLPAASP+ FLLGLPALGK+GGVRC ++GKANG+VENKS  LGMGASL+AA A AA+MSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLLGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAVACAAAMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVFGFIW FYI+YTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL

A0A6J1H5C6 PSII 6.1 kDa protein1.4e-6498.55Show/hide
Query:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLLGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAVACAAAMSSPAMALVDERLSTEGTGLPFG
        MAAVASASAAAVRSSLVQNRPLPAASPTTFLLGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAA ACAA MSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLLGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAVACAAAMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL

A0A6J1H6S9 PSII 6.1 kDa protein3.4e-6397.84Show/hide
Query:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLL-GLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAVACAAAMSSPAMALVDERLSTEGTGLPF
        MAAVASASAAAVRSSLVQNRPLPAASPTTFLL GLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAA ACAA MSSPAMALVDERLSTEGTGLPF
Subjt:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLL-GLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAVACAAAMSSPAMALVDERLSTEGTGLPF

Query:  GLSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
        GLSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
Subjt:  GLSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL

A0A6J1KPY5 PSII 6.1 kDa protein1.6e-6599.28Show/hide
Query:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLL-GLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAVACAAAMSSPAMALVDERLSTEGTGLPF
        MAAVASASAAAVRSSLVQNRPLPAASPTTFLL GLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAVACAAAMSSPAMALVDERLSTEGTGLPF
Subjt:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLL-GLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAVACAAAMSSPAMALVDERLSTEGTGLPF

Query:  GLSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
        GLSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
Subjt:  GLSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL

A0A6J1KYY4 PSII 6.1 kDa protein6.6e-67100Show/hide
Query:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLLGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAVACAAAMSSPAMALVDERLSTEGTGLPFG
        MAAVASASAAAVRSSLVQNRPLPAASPTTFLLGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAVACAAAMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLLGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAVACAAAMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL

SwissProt top hitse value%identityAlignment
Q39194 Photosystem II reaction center W protein, chloroplastic2.5e-3158.39Show/hide
Query:  ASAAAVRSSLVQNRPLPAASPTTFL----LGLPALG-KRGGVRCCVDGKANGEVENKSCNLGMGASLIAAVACAAAMSSPAMALVDERLSTEGTGLPFGL
        AS  A  S++   RP     PT  +    LGLP +G K+GGVRC ++ K     +     +G G S  A  A  A MS+PAMALVDER+STEGTGLPFGL
Subjt:  ASAAAVRSSLVQNRPLPAASPTTFL----LGLPALG-KRGGVRCCVDGKANGEVENKSCNLGMGASLIAAVACAAAMSSPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
        SNNLLGWIL GVFG IWTF+ VYTS+LEEDEESGLSL
Subjt:  SNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL

Q41387 Photosystem II reaction center W protein, chloroplastic6.7e-3257.86Show/hide
Query:  MAAVASASAAAV--RSSLVQNRPLPAASPTTFLLGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAVACAAAMSSPAMALVDERLSTEGTGLP
        MA + ++S+A++  R+SLV N  +  +S    +LGLP++ KR  V C ++ K +      + N  MGASL+AA A AA +S+PAMALVDER+STEGTGLP
Subjt:  MAAVASASAAAV--RSSLVQNRPLPAASPTTFLLGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAVACAAAMSSPAMALVDERLSTEGTGLP

Query:  FGLSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
        FGLSNNLLGWIL GVFG IW  Y VY S LEEDEESGLSL
Subjt:  FGLSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL

Q5ZBY9 Photosystem II reaction center W protein, chloroplastic8.2e-2252.55Show/hide
Query:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLLGLPALGKRGG--VRCCVDGKANGEVENKSCNLGMGASLIAAVACAAAMSSPAMALVDERLSTEGTGLP
        MA V++A+A +V +  V   P          LGLP +  R    VRC    +A       +   G GASL+A  A AA    PAMALVDER+STEGTGL 
Subjt:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLLGLPALGKRGG--VRCCVDGKANGEVENKSCNLGMGASLIAAVACAAAMSSPAMALVDERLSTEGTGLP

Query:  FGLSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESG
         GLSNNLLGWILLGVFG IW+ Y +YTS LEEDEESG
Subjt:  FGLSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESG

Q9SPI9 Photosystem II reaction center W protein, chloroplastic1.6e-0946.97Show/hide
Query:  AAAMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIWTFYIVYTSTLE--EDEESGLSL
        A   + PA ALVDER++ +GTG PFG+++ +LGW+LLGVFG +W  + +    L   ED + GL L
Subjt:  AAAMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIWTFYIVYTSTLE--EDEESGLSL

Arabidopsis top hitse value%identityAlignment
AT2G30570.1 photosystem II reaction center W1.8e-3258.39Show/hide
Query:  ASAAAVRSSLVQNRPLPAASPTTFL----LGLPALG-KRGGVRCCVDGKANGEVENKSCNLGMGASLIAAVACAAAMSSPAMALVDERLSTEGTGLPFGL
        AS  A  S++   RP     PT  +    LGLP +G K+GGVRC ++ K     +     +G G S  A  A  A MS+PAMALVDER+STEGTGLPFGL
Subjt:  ASAAAVRSSLVQNRPLPAASPTTFL----LGLPALG-KRGGVRCCVDGKANGEVENKSCNLGMGASLIAAVACAAAMSSPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
        SNNLLGWIL GVFG IWTF+ VYTS+LEEDEESGLSL
Subjt:  SNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCCGTCGCCTCCGCCTCTGCCGCCGCCGTCCGCTCTTCTCTGGTTCAGAACCGCCCACTCCCGGCGGCTTCACCCACCACCTTCCTTCTTGGGTTGCCTGCATT
GGGTAAGAGAGGAGGAGTAAGGTGTTGTGTGGACGGAAAGGCTAATGGAGAAGTGGAAAACAAGTCGTGCAACTTGGGGATGGGCGCGTCGTTGATAGCTGCTGTGGCGT
GTGCTGCGGCCATGTCGAGCCCAGCCATGGCTTTGGTGGATGAGAGACTGAGCACGGAAGGAACTGGTCTTCCATTTGGTTTGAGCAACAATCTTCTCGGTTGGATTTTG
TTGGGAGTTTTTGGTTTCATTTGGACATTCTATATCGTTTACACTTCTACTCTCGAAGAGGACGAAGAATCAGGCTTATCTCTGTAA
mRNA sequenceShow/hide mRNA sequence
TGGGTAAAGAAAGATGAGATGACACGTGTAGAAGCACAATTGGGCAGAAGTAGATGAAGGATATCAAATGAATGGCTCCCTGTGTGTAGCTTTGTGCGTGGTGGCACTCA
TTGACACAAACCAATAATATTAATCTTCACAAACCCTTTCATCTCTGCTCCCCATATTCCATTATTTTTCATTTTGTCTCCCAAAGTTGAACGCAAAGATCCCAATGGCC
GCCGTCGCCTCCGCCTCTGCCGCCGCCGTCCGCTCTTCTCTGGTTCAGAACCGCCCACTCCCGGCGGCTTCACCCACCACCTTCCTTCTTGGGTTGCCTGCATTGGGTAA
GAGAGGAGGAGTAAGGTGTTGTGTGGACGGAAAGGCTAATGGAGAAGTGGAAAACAAGTCGTGCAACTTGGGGATGGGCGCGTCGTTGATAGCTGCTGTGGCGTGTGCTG
CGGCCATGTCGAGCCCAGCCATGGCTTTGGTGGATGAGAGACTGAGCACGGAAGGAACTGGTCTTCCATTTGGTTTGAGCAACAATCTTCTCGGTTGGATTTTGTTGGGA
GTTTTTGGTTTCATTTGGACATTCTATATCGTTTACACTTCTACTCTCGAAGAGGACGAAGAATCAGGCTTATCTCTGTAAACCAAACTTGTCATCTTATTATTATGATC
GTTGCGGCTAATCTTAGCAGCTCCTTTTGTTCAAATATCAATGAAGAAGAAGTGATCGTTGTAAGATTTCTAAACTTGGTGATCCAAAAGCTTACGATTTCTTAATCGGC
ATTCTAAATGGCTTCTGATTTCATATGAATTTTGAATGAACAAAATAAGATTTAGGAGTCAAAAGTTAAGCCTAATTGTTTGAGATGATAATGTATATCTTCCGGATGAT
CATCAAATTTTGATCTATC
Protein sequenceShow/hide protein sequence
MAAVASASAAAVRSSLVQNRPLPAASPTTFLLGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAVACAAAMSSPAMALVDERLSTEGTGLPFGLSNNLLGWIL
LGVFGFIWTFYIVYTSTLEEDEESGLSL