CuGenDBv2

Gene ID	CmaCh08G004360
Organism	Cucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description	Photosystem I assembly protein Ycf3
Genome location	Cma_Chr08:2471309..2472676
RNA-Seq Expression	CmaCh08G004360
Synteny	CmaCh08G004360
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001440 - Tetratricopeptide repeat 1 IPR011990 - Tetratricopeptide-like helical domain superfamily IPR019734 - Tetratricopeptide repeat

Homology

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GenBank top hits

e value

%identity

Alignment

QTA71755.1 photosystem I assembly protein Ycf3 [Coriaria nepalensis]

1.3e-39

88.3

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Query:  MRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY--------GDSEIAEAWFNQAAEYWKQAIALTPGFHV
        MRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY        GDSEIAEAWFNQAAEYWKQAIALTPG ++
Subjt:  MRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY--------GDSEIAEAWFNQAAEYWKQAIALTPGFHV

RDY14688.1 Photosystem I assembly protein Ycf3, partial [Mucuna pruriens]

1.2e-40

93.02

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Query:  MRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYGDSEIAEAWFNQAAEYWKQAIALTPGFHV
        MRLEIDPYDRSYILYNIGLIHT NGEHTKALEYYFRALERNPFLPQAFNNMAVICHYGDSE+AE+WFNQAAEYWKQAIALTPG ++
Subjt:  MRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYGDSEIAEAWFNQAAEYWKQAIALTPGFHV

YP_009447451.1 photosystem I assembly protein Ycf3 [Cucurbita maxima]

1.3e-39

88.3

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Query:  MRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY--------GDSEIAEAWFNQAAEYWKQAIALTPGFHV
        MRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY        GDSEIAEAWFNQAAEYWKQAIALTPG ++
Subjt:  MRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY--------GDSEIAEAWFNQAAEYWKQAIALTPGFHV

YP_009525187.1 photosystem I assembly protein Ycf3 [Hodgsonia macrocarpa]

1.3e-39

88.3

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Query:  MRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY--------GDSEIAEAWFNQAAEYWKQAIALTPGFHV
        MRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY        GDSEIAEAWFNQAAEYWKQAIALTPG ++
Subjt:  MRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY--------GDSEIAEAWFNQAAEYWKQAIALTPGFHV

YP_009751823.1 photosystem I assembly protein Ycf3 [Indofevillea khasiana]

1.3e-39

88.3

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Query:  MRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY--------GDSEIAEAWFNQAAEYWKQAIALTPGFHV
        MRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY        GDSEIAEAWFNQAAEYWKQAIALTPG ++
Subjt:  MRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY--------GDSEIAEAWFNQAAEYWKQAIALTPGFHV

TrEMBL top hits

e value

%identity

Alignment

A0A1X9Q1C0 Photosystem I assembly protein ycf3

6.5e-40

88.3

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Query:  MRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY--------GDSEIAEAWFNQAAEYWKQAIALTPGFHV
        MRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY        GDSEIAEAWFNQAAEYWKQAIALTPG ++
Subjt:  MRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY--------GDSEIAEAWFNQAAEYWKQAIALTPGFHV

A0A218KG30 Photosystem I assembly protein Ycf3

6.5e-40

88.3

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Query:  MRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY--------GDSEIAEAWFNQAAEYWKQAIALTPGFHV
        MRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY        GDSEIAEAWFNQAAEYWKQAIALTPG ++
Subjt:  MRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY--------GDSEIAEAWFNQAAEYWKQAIALTPGFHV

A0A371II85 Photosystem I assembly protein Ycf3 (Fragment)

5.9e-41

93.02

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Query:  MRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYGDSEIAEAWFNQAAEYWKQAIALTPGFHV
        MRLEIDPYDRSYILYNIGLIHT NGEHTKALEYYFRALERNPFLPQAFNNMAVICHYGDSE+AE+WFNQAAEYWKQAIALTPG ++
Subjt:  MRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYGDSEIAEAWFNQAAEYWKQAIALTPGFHV

A0A410HF83 Photosystem I assembly protein Ycf3

6.5e-40

88.3

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Query:  MRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY--------GDSEIAEAWFNQAAEYWKQAIALTPGFHV
        MRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY        GDSEIAEAWFNQAAEYWKQAIALTPG ++
Subjt:  MRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY--------GDSEIAEAWFNQAAEYWKQAIALTPGFHV

G3ETY6 Photosystem I assembly protein Ycf3

6.5e-40

88.3

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Query:  MRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY--------GDSEIAEAWFNQAAEYWKQAIALTPGFHV
        MRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY        GDSEIAEAWFNQAAEYWKQAIALTPG ++
Subjt:  MRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY--------GDSEIAEAWFNQAAEYWKQAIALTPGFHV

SwissProt top hits

e value

%identity

Alignment

A4GG96 Photosystem I assembly protein Ycf3

2.5e-41

85.11

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Query:  MRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY--------GDSEIAEAWFNQAAEYWKQAIALTPGFHV
        MRLEIDPYDRSYILYNIGLIHT NGEHTKALEYYFRALERNPFLPQAFNNMAVICHY        GDSE+AE+WFNQAAEYWKQAIALTPG ++
Subjt:  MRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY--------GDSEIAEAWFNQAAEYWKQAIALTPGFHV

Q09MH7 Photosystem I assembly protein Ycf3

8.7e-42

87.23

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Query:  MRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY--------GDSEIAEAWFNQAAEYWKQAIALTPGFHV
        MRLEIDPYDRSYILYNIGLIHT NGEHTKALEYYFRALERNPFLPQAFNNMAVICHY        GDSEIAEAWFNQAAEYWKQAIALTPG ++
Subjt:  MRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY--------GDSEIAEAWFNQAAEYWKQAIALTPGFHV

Q09X16 Photosystem I assembly protein Ycf3

1.1e-41

86.17

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Query:  MRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY--------GDSEIAEAWFNQAAEYWKQAIALTPGFHV
        MRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY        GDSEIAEAWF+QAAEYWKQA+ALTPG ++
Subjt:  MRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY--------GDSEIAEAWFNQAAEYWKQAIALTPGFHV

Q2PMU4 Photosystem I assembly protein Ycf3

2.5e-41

85.11

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Query:  MRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY--------GDSEIAEAWFNQAAEYWKQAIALTPGFHV
        MRLEIDPYDRSYILYNIGLIHT NGEHTKALEYYFRALERNPFLPQAFNNMAVICHY        GDSE+AE+WFNQAAEYWKQAIALTPG ++
Subjt:  MRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY--------GDSEIAEAWFNQAAEYWKQAIALTPGFHV

Q4VZH4 Photosystem I assembly protein Ycf3

1.8e-42

88.3

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Query:  MRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY--------GDSEIAEAWFNQAAEYWKQAIALTPGFHV
        MRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY        GDSEIAEAWFNQAAEYWKQAIALTPG ++
Subjt:  MRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY--------GDSEIAEAWFNQAAEYWKQAIALTPGFHV

Arabidopsis top hits

e value

%identity

Alignment

ATCG00360.1 Tetratricopeptide repeat (TPR)-like superfamily protein

3.4e-41

84.04

Show/hide

Query:  MRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY--------GDSEIAEAWFNQAAEYWKQAIALTPGFHV
        MRLEIDPYDRSYILYNIGLIHT NGEHTKALEYYFRALERNPFLPQAFNNMAVICHY        GDSE+AEAWF QAAEYWKQAI LTPG ++
Subjt:  MRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY--------GDSEIAEAWFNQAAEYWKQAIALTPGFHV

Sequences

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CDS sequence

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ATGCGACTAGAAATCGATCCCTATGATCGAAGTTATATACTCTATAACATAGGTCTTATCCACACAAGGAACGGAGAACATACGAAAGCTTTGGAATATTATTTT
CGGGCACTAGAACGAAACCCGTTCTTACCACAAGCTTTTAATAATATGGCTGTGATCTGTCATTACGGAGATTCTGAAATTGCGGAGGCTTGGTTCAATCAAGCC
GCTGAGTATTGGAAACAAGCTATAGCACTTACTCCCGGTTTTCATGTGCTCAACGCTACTTTCAACTGCTCCCAATTGGTGTGGGGGCTTCTGTGCTACTTTCAA
TTGGTTTACTCGTTGGGGTTTGAGCGTTGCTCCCAACTGGCGCAGCCCCCTCCGGAGTCTCAGCGATGCTCCCAACTGGCACAGTCCCCTCCGGAGTCTCAGCGA
TGCTCCCACCCGACGCAACCCCCTCTGGAGTCTCAGCGATGCTCCCACTGGACGCAGCACCCTCTGGAGTCTCAGCGATGCTCCCACTGGACGCAGCACCCTCTG
GAGTCTCAGCAATGCTCCCACCCGATGCAACACCCTCCGGAGTCTCAGCGATGCTCCCACCCGACGCAGCACCCTCAGAAGGTGCAGCTGCTGGGACTTGTGTTC
CAAATGTATGATATGAAAATGGACGATCAACATTGA

mRNA sequence

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Protein sequence

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MRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYGDSEIAEAWFNQAAEYWKQAIALTPGFHVLNATFNCSQLVWGLLCYFQ
LVYSLGFERCSQLAQPPPESQRCSQLAQSPPESQRCSHPTQPPLESQRCSHWTQHPLESQRCSHWTQHPLESQQCSHPMQHPPESQRCSHPTQHPQKVQLLGLVF
QMYDMKMDDQH

CmaCh08G004360 (gene) of Cucurbita maxima (Rimu) v1.1 genome