CuGenDBv2

Gene ID	CmaCh08G004380
Organism	Cucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description	Photosystem I assembly protein Ycf4
Genome location	Cma_Chr08:2476270..2478160
RNA-Seq Expression	CmaCh08G004380
Synteny	CmaCh08G004380
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0009522 - photosystem I (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR003359 - Photosystem I Ycf4, assembly

Homology

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GenBank top hits

e value

%identity

Alignment

QAU09219.1 Ycf4, partial [Triplostegia grandiflora]

5.2e-14

74.19

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Query:  ENIVTINV-VKEGIYVRRVLYMEIRGQWAILLIRTDQNLIPREIEQKAAELAYFLHVPIGLY
        +NI +I + VKEGIY RRVLYM+IRGQ AI L RTD+NL PREIEQKAAELAYFLHVPI ++
Subjt:  ENIVTINV-VKEGIYVRRVLYMEIRGQWAILLIRTDQNLIPREIEQKAAELAYFLHVPIGLY

YP_009229499.1 photosystem I assembly protein Ycf4 [Aquilaria sinensis]

1.2e-13

81.13

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Query:  VKEGIYVRRVLYMEIRGQWAILLIRTDQNLIPREIEQKAAELAYFLHVPIGLY
        VKEGIYVRRVLYM+IRGQ A+ LIRTD+NL PREIEQKAAELAYFL VPI ++
Subjt:  VKEGIYVRRVLYMEIRGQWAILLIRTDQNLIPREIEQKAAELAYFLHVPIGLY

YP_009526775.1 Ycf4 [Dipsacus japonicus]

5.2e-14

74.19

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Query:  ENIVTINV-VKEGIYVRRVLYMEIRGQWAILLIRTDQNLIPREIEQKAAELAYFLHVPIGLY
        +NI +I + VKEGIY RRVLYM+IRGQ AI L RTD+NL PREIEQKAAELAYFLHVPI ++
Subjt:  ENIVTINV-VKEGIYVRRVLYMEIRGQWAILLIRTDQNLIPREIEQKAAELAYFLHVPIGLY

YP_009562083.1 photosystem I assembly protein ycf4 [Aquilaria malaccensis]

1.2e-13

81.13

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Query:  VKEGIYVRRVLYMEIRGQWAILLIRTDQNLIPREIEQKAAELAYFLHVPIGLY
        VKEGIYVRRVLYM+IRGQ A+ LIRTD+NL PREIEQKAAELAYFL VPI ++
Subjt:  VKEGIYVRRVLYMEIRGQWAILLIRTDQNLIPREIEQKAAELAYFLHVPIGLY

YP_009705441.1 photosystem I assembly protein Ycf4 [Triplostegia glandulifera]

6.8e-14

72.58

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Query:  ENIVTINV-VKEGIYVRRVLYMEIRGQWAILLIRTDQNLIPREIEQKAAELAYFLHVPIGLY
        +NI +I + VKEGIY RRVLYM+IRGQ A+ L RTD+NL PREIEQKAAELAYFLHVPI ++
Subjt:  ENIVTINV-VKEGIYVRRVLYMEIRGQWAILLIRTDQNLIPREIEQKAAELAYFLHVPIGLY

TrEMBL top hits

e value

%identity

Alignment

A0A385JPL2 Photosystem I assembly protein Ycf4

2.5e-14

74.19

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Query:  ENIVTINV-VKEGIYVRRVLYMEIRGQWAILLIRTDQNLIPREIEQKAAELAYFLHVPIGLY
        +NI +I + VKEGIY RRVLYM+IRGQ AI L RTD+NL PREIEQKAAELAYFLHVPI ++
Subjt:  ENIVTINV-VKEGIYVRRVLYMEIRGQWAILLIRTDQNLIPREIEQKAAELAYFLHVPIGLY

A0A385JPW6 Photosystem I assembly protein Ycf4

2.5e-14

74.19

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Query:  ENIVTINV-VKEGIYVRRVLYMEIRGQWAILLIRTDQNLIPREIEQKAAELAYFLHVPIGLY
        +NI +I + VKEGIY RRVLYM+IRGQ AI L RTD+NL PREIEQKAAELAYFLHVPI ++
Subjt:  ENIVTINV-VKEGIYVRRVLYMEIRGQWAILLIRTDQNLIPREIEQKAAELAYFLHVPIGLY

A0A5P8FW45 Photosystem I assembly protein Ycf4

2.5e-14

74.19

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Query:  ENIVTINV-VKEGIYVRRVLYMEIRGQWAILLIRTDQNLIPREIEQKAAELAYFLHVPIGLY
        +NI +I + VKEGIY RRVLYM+IRGQ AI L RTD+NL PREIEQKAAELAYFLHVPI ++
Subjt:  ENIVTINV-VKEGIYVRRVLYMEIRGQWAILLIRTDQNLIPREIEQKAAELAYFLHVPIGLY

A0A5P8FX67 Photosystem I assembly protein Ycf4

2.5e-14

74.19

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Query:  ENIVTINV-VKEGIYVRRVLYMEIRGQWAILLIRTDQNLIPREIEQKAAELAYFLHVPIGLY
        +NI +I + VKEGIY RRVLYM+IRGQ AI L RTD+NL PREIEQKAAELAYFLHVPI ++
Subjt:  ENIVTINV-VKEGIYVRRVLYMEIRGQWAILLIRTDQNLIPREIEQKAAELAYFLHVPIGLY

A0A6B7ER54 Photosystem I assembly protein Ycf4 (Fragment)

2.5e-14

74.19

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Query:  ENIVTINV-VKEGIYVRRVLYMEIRGQWAILLIRTDQNLIPREIEQKAAELAYFLHVPIGLY
        +NI +I + VKEGIY RRVLYM+IRGQ AI L RTD+NL PREIEQKAAELAYFLHVPI ++
Subjt:  ENIVTINV-VKEGIYVRRVLYMEIRGQWAILLIRTDQNLIPREIEQKAAELAYFLHVPIGLY

SwissProt top hits

e value

%identity

Alignment

A0ZZ46 Photosystem I assembly protein Ycf4

7.6e-16

79.25

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Query:  VKEGIYVRRVLYMEIRGQWAILLIRTDQNLIPREIEQKAAELAYFLHVPIGLY
        VKEGIY RRVLYMEIRGQ A+ L RTD+NL PREIEQKAAELAYFL VPI ++
Subjt:  VKEGIYVRRVLYMEIRGQWAILLIRTDQNLIPREIEQKAAELAYFLHVPIGLY

Q09G35 Photosystem I assembly protein Ycf4

1.7e-15

79.25

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Query:  VKEGIYVRRVLYMEIRGQWAILLIRTDQNLIPREIEQKAAELAYFLHVPIGLY
        VKEG+Y RRVLYMEIRGQ AI L RTD+NL PREIEQKAAELAYFL VPI ++
Subjt:  VKEGIYVRRVLYMEIRGQWAILLIRTDQNLIPREIEQKAAELAYFLHVPIGLY

Q14FE6 Photosystem I assembly protein Ycf4

1.7e-15

79.25

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Query:  VKEGIYVRRVLYMEIRGQWAILLIRTDQNLIPREIEQKAAELAYFLHVPIGLY
        VKEG Y RRVLYMEIRGQ AI L RTD+NL PREIEQKAAELAYFL VPI ++
Subjt:  VKEGIYVRRVLYMEIRGQWAILLIRTDQNLIPREIEQKAAELAYFLHVPIGLY

Q2L913 Photosystem I assembly protein Ycf4

7.6e-16

79.25

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Query:  VKEGIYVRRVLYMEIRGQWAILLIRTDQNLIPREIEQKAAELAYFLHVPIGLY
        VKEGIY RRVLYMEIRGQ A+ L RTD+NL PREIEQKAAELAYFL VPI ++
Subjt:  VKEGIYVRRVLYMEIRGQWAILLIRTDQNLIPREIEQKAAELAYFLHVPIGLY

Q2QD78 Photosystem I assembly protein Ycf4

2.6e-16

83.02

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Query:  VKEGIYVRRVLYMEIRGQWAILLIRTDQNLIPREIEQKAAELAYFLHVPIGLY
        VKEGIY RRVLYMEIRGQ AI L RTDQNL PREIEQKAAELAYFL VPI ++
Subjt:  VKEGIYVRRVLYMEIRGQWAILLIRTDQNLIPREIEQKAAELAYFLHVPIGLY

Arabidopsis top hits

e value

%identity

Alignment

ATCG00520.1 unfolded protein binding

3.9e-15

75.47

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Query:  VKEGIYVRRVLYMEIRGQWAILLIRTDQNLIPREIEQKAAELAYFLHVPIGLY
        VKEG+  RRVLYMEIRGQ AI LIRTD+N   REIEQKAAELAYFL VPI ++
Subjt:  VKEGIYVRRVLYMEIRGQWAILLIRTDQNLIPREIEQKAAELAYFLHVPIGLY

Sequences

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CDS sequence

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ATGGAGAGGTTTCAAGCTCTTTCTACGAAGGTGGGTGTCACTTTTGGTGATGCCACTGGTACCGTAAATCAAGATGGTCAATTTTCATTTCGTACTTTTAAACCAGATGA
CATGCAAGCTCGAGCAGTTGCACCAATTGGAGGTATTTCACAACCACCCTTTTTTACACCAATCGAAGGTAACACACAAGTCCCAGCGGCTGCACCGGTTGGAAGTAGCA
ATGACATTGATCTTGCTTCTAAGGGTCATGAAATTTCCACCAAGAACAGTGAAAACATTGTTACTATTAATGTAGTTAAAGAGGGTATTTATGTACGTCGTGTTCTTTAT
ATGGAAATTAGAGGCCAATGGGCCATTCTCTTGATTCGTACCGATCAAAATCTGATCCCACGAGAAATTGAGCAAAAGGCTGCCGAATTGGCCTATTTCTTGCATGTACC
AATTGGTTTGTACGAGGATGTTTTTGTTTAA

mRNA sequence

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Protein sequence

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MERFQALSTKVGVTFGDATGTVNQDGQFSFRTFKPDDMQARAVAPIGGISQPPFFTPIEGNTQVPAAAPVGSSNDIDLASKGHEISTKNSENIVTINVVKEGIYVRRVLY
MEIRGQWAILLIRTDQNLIPREIEQKAAELAYFLHVPIGLYEDVFV

CmaCh08G004380 (gene) of Cucurbita maxima (Rimu) v1.1 genome