CuGenDBv2

Gene ID	CmaCh08G005190
Organism	Cucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description	DNA-directed RNA polymerases II, IV and V subunit 11-like
Genome location	Cma_Chr08:3001161..3002860
RNA-Seq Expression	CmaCh08G005190
Synteny	CmaCh08G005190
Gene Ontology terms	GO:0006366 - transcription by RNA polymerase II (biological process) GO:0005665 - RNA polymerase II, core complex (cellular component) GO:0001055 - RNA polymerase II activity (molecular function) GO:0003677 - DNA binding (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	IPR008193 - DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site IPR009025 - DNA-directed RNA polymerase, RBP11-like dimerisation domain IPR036603 - RNA polymerase, RBP11-like subunit IPR037685 - RNA polymerase RBP11

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6593293.1 DNA-directed RNA polymerases II, IV and V subunit 11, partial [Cucurbita argyrosperma subsp. sororia]

1.3e-57

99.14

Show/hide

Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LKYELEGAFSRFSRSY
        LKYELEGAFSRFSR+Y
Subjt:  LKYELEGAFSRFSRSY

XP_004135939.1 DNA-directed RNA polymerases II, IV and V subunit 11 isoform X3 [Cucumis sativus]

2.7e-55

94.83

Show/hide

Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFI+EREDHTIGNI+RMQLHRDDNVLFA YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LKYELEGAFSRFSRSY
        LKYELEG  SRFSR+Y
Subjt:  LKYELEGAFSRFSRSY

XP_022960210.1 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 [Cucurbita moschata]

1.3e-57

99.14

Show/hide

Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LKYELEGAFSRFSRSY
        LKYELEGAFSRFSR+Y
Subjt:  LKYELEGAFSRFSRSY

XP_023004699.1 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 [Cucurbita maxima]

5.7e-58

100

Show/hide

Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LKYELEGAFSRFSRSY
        LKYELEGAFSRFSRSY
Subjt:  LKYELEGAFSRFSRSY

XP_023004700.1 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X2 [Cucurbita maxima]

2.0e-55

98.28

Show/hide

Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVR  TASQSSPMQAYNQAINDLDKELDV
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LKYELEGAFSRFSRSY
        LKYELEGAFSRFSRSY
Subjt:  LKYELEGAFSRFSRSY

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CFN3 DNA-directed RNA polymerases II, IV and V subunit 11-like

6.4e-55

93.97

Show/hide

Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFI+EREDHTIGNI+RMQLHRDDNVLFA YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LKYELEGAFSRFSRSY
        LKYELE   SRFSR+Y
Subjt:  LKYELEGAFSRFSRSY

A0A6J1H6T9 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X2

2.2e-55

97.41

Show/hide

Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVR  TASQSSPMQAYNQAINDLDKELDV
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LKYELEGAFSRFSRSY
        LKYELEGAFSRFSR+Y
Subjt:  LKYELEGAFSRFSRSY

A0A6J1H8G6 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1

6.2e-58

99.14

Show/hide

Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LKYELEGAFSRFSRSY
        LKYELEGAFSRFSR+Y
Subjt:  LKYELEGAFSRFSRSY

A0A6J1KVB7 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X2

9.9e-56

98.28

Show/hide

Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVR  TASQSSPMQAYNQAINDLDKELDV
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LKYELEGAFSRFSRSY
        LKYELEGAFSRFSRSY
Subjt:  LKYELEGAFSRFSRSY

A0A6J1KX24 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1

2.8e-58

100

Show/hide

Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LKYELEGAFSRFSRSY
        LKYELEGAFSRFSRSY
Subjt:  LKYELEGAFSRFSRSY

SwissProt top hits

e value

%identity

Alignment

O08740 DNA-directed RNA polymerase II subunit RPB11

2.3e-25

47.22

Show/hide

Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MN P  +E F++ EG KK++  +DTK+ NA  F + +EDHT+GNII+ QL +D  VLFA Y++PHPL+++I++R+QT    SP +A+  AI DL  EL +
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LKYELEGA
        L+    GA
Subjt:  LKYELEGA

Q32P79 DNA-directed RNA polymerase II subunit RPB11

2.5e-24

48.04

Show/hide

Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MN P  +E F++ EG KK++  +DTK+ NA  F + +EDHT+GNII+ QL +D  VLFA Y++PHPL+++I++R+QT    SP +A+  AI DL  EL +
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LK
        L+
Subjt:  LK

Q38859 DNA-directed RNA polymerases II, IV and V subunit 11

3.3e-48

77.59

Show/hide

Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MN P+RYERFVVPEG KKVSY+RDTKI+NAA+F VEREDHTIGNI+RMQLHRD+NVLFA YQLPHPLKY+I+VRI T SQSSPMQAYNQAINDLDKELD 
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LKYELEGAFSRFSRSY
        LK + E   ++FS  +
Subjt:  LKYELEGAFSRFSRSY

Q86JJ5 DNA-directed RNA polymerase II subunit rpb11

6.7e-25

49.02

Show/hide

Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MN PDR+E FV+P+GAKKV+  RDTKI NA+ F + +EDHTIGN+IRMQL  D +++FA Y++PHPL++ + +RIQT + ++P++   +++  L +E   
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LK
        L+
Subjt:  LK

Q9VJE4 DNA-directed RNA polymerase II subunit RPB11

1.9e-24

48.15

Show/hide

Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MN P  +E F++ EG KK+  E DTK+ NAA F + +EDHT+GN+IR QL +D NVLFA Y++PHPL+++ ++RIQT +  SP +A+  AI DL  EL +
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LKYELEGA
         +   + A
Subjt:  LKYELEGA

Arabidopsis top hits

e value

%identity

Alignment

AT3G52090.1 DNA-directed RNA polymerase, RBP11-like

2.3e-49

77.59

Show/hide

Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MN P+RYERFVVPEG KKVSY+RDTKI+NAA+F VEREDHTIGNI+RMQLHRD+NVLFA YQLPHPLKY+I+VRI T SQSSPMQAYNQAINDLDKELD 
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LKYELEGAFSRFSRSY
        LK + E   ++FS  +
Subjt:  LKYELEGAFSRFSRSY

AT3G52090.2 DNA-directed RNA polymerase, RBP11-like

1.3e-44

61.64

Show/hide

Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVR--------------------------
        MN P+RYERFVVPEG KKVSY+RDTKI+NAA+F VEREDHTIGNI+RMQLHRD+NVLFA YQLPHPLKY+I+VR                          
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVR--------------------------

Query:  ----IQTASQSSPMQAYNQAINDLDKELDVLKYELEGAFSRFSRSY
            I T SQSSPMQAYNQAINDLDKELD LK + E   ++FS  +
Subjt:  ----IQTASQSSPMQAYNQAINDLDKELDVLKYELEGAFSRFSRSY

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAATGTACCCGATCGTTACGAGCGCTTCGTCGTCCCCGAGGGCGCCAAGAAGGTTTCATACGAGAGAGACACGAAGATCATGAACGCGGCGACTTTCATCGTGGAGAG
AGAGGATCATACTATCGGAAACATCATCCGCATGCAACTTCACAGAGATGATAATGTGCTGTTTGCTGCCTACCAGCTTCCTCATCCTCTTAAGTACAGAATACTTGTTC
GGATACAGACGGCTAGCCAGTCCTCGCCGATGCAGGCATATAATCAGGCTATCAATGATTTGGATAAGGAGCTTGACGTTTTGAAATATGAGCTCGAGGGTGCGTTTTCT
AGGTTCTCGAGGTCCTATTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEGAFS
RFSRSY

CmaCh08G005190 (gene) of Cucurbita maxima (Rimu) v1.1 genome