; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmaCh08G006480 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh08G006480
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionProtein Ycf2
Genome locationCma_Chr08:3766762..3767887
RNA-Seq ExpressionCmaCh08G006480
SyntenyCmaCh08G006480
Gene Ontology termsGO:0110165 - cellular anatomical structure (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EEF36790.1 conserved hypothetical protein [Ricinus communis]3.5e-1240.79Show/hide
Query:  SASGGNMLWGGGPSYG----KDRHSLLIIRQSLIHKPRVWL--------------IVCLNFPSHGKPFSLRLTLSPRE--------LDDPSYLVKYLATN
        SASGGN LWGGGP+YG    +     L I    + K R++L              +   +FPSHGKPFSL L LSP              SYLVKYLATN
Subjt:  SASGGNMLWGGGPSYG----KDRHSLLIIRQSLIHKPRVWL--------------IVCLNFPSHGKPFSLRLTLSPRE--------LDDPSYLVKYLATN

Query:  SYLPFITV--------------------ANDSDDIDRDLEAE---ASKMNAL
        SYLPFITV                     + SDDID D + E    ++MNAL
Subjt:  SYLPFITV--------------------ANDSDDIDRDLEAE---ASKMNAL

KAF4359987.1 hypothetical protein F8388_004494 [Cannabis sativa]2.4e-1343.48Show/hide
Query:  SASGGNMLWGGGPSYG----KDRHSLLIIRQSLIHKPRVWLIVCLNFPSHGKPFSLRLTLS-PREL-------DDPSYLVKYLATNSYLPFITV------
        SASGG+MLWGGGP+YG     +R   L   Q++ +          +FPSHGKPFSLRL LS  R +          SYLVKYLATNSY+PFI V      
Subjt:  SASGGNMLWGGGPSYG----KDRHSLLIIRQSLIHKPRVWLIVCLNFPSHGKPFSLRLTLS-PREL-------DDPSYLVKYLATNSYLPFITV------

Query:  --------------ANDSDDIDRDLEAE---ASKMNAL
                       +DSDDI+RD + E    + MNAL
Subjt:  --------------ANDSDDIDRDLEAE---ASKMNAL

PHT30938.1 Protein Ycf2 [Capsicum baccatum]3.3e-1045.76Show/hide
Query:  KDRHSLLIIRQSLIHKPRVWLIV-----------------CLNFPSHGKPFSLRLTLSPRE--------LDDPSYLVKYLATNSYLPFITV---------
        KD +SLLIIRQSLIHK RV                       +FPSHGKPFSLRL LSP              SYLVKYLATNSY+PFITV         
Subjt:  KDRHSLLIIRQSLIHKPRVWLIV-----------------CLNFPSHGKPFSLRLTLSPRE--------LDDPSYLVKYLATNSYLPFITV---------

Query:  ----------ANDSDDID
                   +DSDDID
Subjt:  ----------ANDSDDID

QZJ46394.1 Ycf2 protein [Gentiana triflora]7.3e-1043.1Show/hide
Query:  DRHSLLIIRQSLIHKPRVWLIVCLNFPSHGKPFSLRLTLSPRE--------LDDPSYLVKYLATNSYLPFITV-------------------ANDSDDID
        +R   L   Q+L +     +    NFPSHGKPFSLRL LSP              SYLVKYLA NSY+PFITV                    +DSDDID
Subjt:  DRHSLLIIRQSLIHKPRVWLIVCLNFPSHGKPFSLRLTLSPRE--------LDDPSYLVKYLATNSYLPFITV-------------------ANDSDDID

Query:  RDLEAE---ASKMNAL
        RDL+ E    + MNAL
Subjt:  RDLEAE---ASKMNAL

YP_010030731.1 hypothetical chloroplast RF21 [Gentiana manshurica]7.3e-1043.1Show/hide
Query:  DRHSLLIIRQSLIHKPRVWLIVCLNFPSHGKPFSLRLTLSPRE--------LDDPSYLVKYLATNSYLPFITV-------------------ANDSDDID
        +R   L   Q+L +     +    NFPSHGKPFSLRL LSP              SYLVKYLA NSY+PFITV                    +DSDDID
Subjt:  DRHSLLIIRQSLIHKPRVWLIVCLNFPSHGKPFSLRLTLSPRE--------LDDPSYLVKYLATNSYLPFITV-------------------ANDSDDID

Query:  RDLEAE---ASKMNAL
        RDL+ E    + MNAL
Subjt:  RDLEAE---ASKMNAL

TrEMBL top hitse value%identityAlignment
A0A2G2VDC7 Protein Ycf21.6e-1045.76Show/hide
Query:  KDRHSLLIIRQSLIHKPRVWLIV-----------------CLNFPSHGKPFSLRLTLSPRE--------LDDPSYLVKYLATNSYLPFITV---------
        KD +SLLIIRQSLIHK RV                       +FPSHGKPFSLRL LSP              SYLVKYLATNSY+PFITV         
Subjt:  KDRHSLLIIRQSLIHKPRVWLIV-----------------CLNFPSHGKPFSLRLTLSPRE--------LDDPSYLVKYLATNSYLPFITV---------

Query:  ----------ANDSDDID
                   +DSDDID
Subjt:  ----------ANDSDDID

A0A2U8U5P8 Protein Ycf24.6e-1041.88Show/hide
Query:  DRHSLLIIRQSLIHKPRVWLIVCLNFPSHGKPFSLRLTLSPRE--------LDDPSYLVKYLATNSYLPFITV--------------------ANDSDDI
        +R   L   Q++ +    W     +FPS GKPFSLRL LSP              SYLVKYLATNSY+PFITV                     +DSDDI
Subjt:  DRHSLLIIRQSLIHKPRVWLIVCLNFPSHGKPFSLRLTLSPRE--------LDDPSYLVKYLATNSYLPFITV--------------------ANDSDDI

Query:  DRDLEAE---ASKMNAL
        DRDL+ E    ++MNAL
Subjt:  DRDLEAE---ASKMNAL

A0A7J6ENG8 AAA domain-containing protein1.2e-1343.48Show/hide
Query:  SASGGNMLWGGGPSYG----KDRHSLLIIRQSLIHKPRVWLIVCLNFPSHGKPFSLRLTLS-PREL-------DDPSYLVKYLATNSYLPFITV------
        SASGG+MLWGGGP+YG     +R   L   Q++ +          +FPSHGKPFSLRL LS  R +          SYLVKYLATNSY+PFI V      
Subjt:  SASGGNMLWGGGPSYG----KDRHSLLIIRQSLIHKPRVWLIVCLNFPSHGKPFSLRLTLS-PREL-------DDPSYLVKYLATNSYLPFITV------

Query:  --------------ANDSDDIDRDLEAE---ASKMNAL
                       +DSDDI+RD + E    + MNAL
Subjt:  --------------ANDSDDIDRDLEAE---ASKMNAL

A0A7S6QYT6 Hypothetical chloroplast RF213.6e-1043.1Show/hide
Query:  DRHSLLIIRQSLIHKPRVWLIVCLNFPSHGKPFSLRLTLSPRE--------LDDPSYLVKYLATNSYLPFITV-------------------ANDSDDID
        +R   L   Q+L +     +    NFPSHGKPFSLRL LSP              SYLVKYLA NSY+PFITV                    +DSDDID
Subjt:  DRHSLLIIRQSLIHKPRVWLIVCLNFPSHGKPFSLRLTLSPRE--------LDDPSYLVKYLATNSYLPFITV-------------------ANDSDDID

Query:  RDLEAE---ASKMNAL
        RDL+ E    + MNAL
Subjt:  RDLEAE---ASKMNAL

B9SHW9 AAA domain-containing protein1.7e-1240.79Show/hide
Query:  SASGGNMLWGGGPSYG----KDRHSLLIIRQSLIHKPRVWL--------------IVCLNFPSHGKPFSLRLTLSPRE--------LDDPSYLVKYLATN
        SASGGN LWGGGP+YG    +     L I    + K R++L              +   +FPSHGKPFSL L LSP              SYLVKYLATN
Subjt:  SASGGNMLWGGGPSYG----KDRHSLLIIRQSLIHKPRVWL--------------IVCLNFPSHGKPFSLRLTLSPRE--------LDDPSYLVKYLATN

Query:  SYLPFITV--------------------ANDSDDIDRDLEAE---ASKMNAL
        SYLPFITV                     + SDDID D + E    ++MNAL
Subjt:  SYLPFITV--------------------ANDSDDIDRDLEAE---ASKMNAL

SwissProt top hitse value%identityAlignment
A0A379 Protein Ycf21.2e-1045.92Show/hide
Query:  NFPSHGKPFSLRLTLSPREL--------DDPSYLVKYLATNSYLPFITV-------------------------ANDSDDIDRDLEAE---ASKMNAL
        +FPSHGKPFSLRL LSP              SYLVKYLATNSY+PFITV                          + SDDIDRDL+ E    + MNAL
Subjt:  NFPSHGKPFSLRLTLSPREL--------DDPSYLVKYLATNSYLPFITV-------------------------ANDSDDIDRDLEAE---ASKMNAL

A4GGE1 Protein Ycf22.8e-1240.54Show/hide
Query:  DRHSLLIIRQSLIHKPRVWLIVCLNFPSHGKPFSLRLTLSPREL---------DDPSYLVKYLATNSYLPFITV-----------------------AND
        +RH  L   Q++ +   +W     +FPSHGKPFSLRL L P               SYLVKYLA NSY+PFITV                       ++D
Subjt:  DRHSLLIIRQSLIHKPRVWLIVCLNFPSHGKPFSLRLTLSPREL---------DDPSYLVKYLATNSYLPFITV-----------------------AND

Query:  SDDIDRDLEAE
        SDDIDRDL+ E
Subjt:  SDDIDRDLEAE

P08973 Protein Ycf21.8e-1151.72Show/hide
Query:  NFPSHGKPFSLRLTLSPRE--------LDDPSYLVKYLATNSYLPFITV--------------ANDSDDIDRDLEAE---ASKMNAL
        +FPSHGKPFSLRL LSP              SYLVKYLATNSY+PFITV               + SDDIDRDL+ E    + MNAL
Subjt:  NFPSHGKPFSLRLTLSPRE--------LDDPSYLVKYLATNSYLPFITV--------------ANDSDDIDRDLEAE---ASKMNAL

Q09WV7 Protein Ycf21.2e-1049.46Show/hide
Query:  NFPSHGKPFSLRLTLS-PREL-------DDPSYLVKYLATNSYLPFITV--------------------ANDSDDIDRDLEAE---ASKMNAL
        +FPSHGKPFSLRL LS  R +          SYLVKYLATNSY+PFITV                     +DSDDIDRDL+ E    + MNAL
Subjt:  NFPSHGKPFSLRLTLS-PREL-------DDPSYLVKYLATNSYLPFITV--------------------ANDSDDIDRDLEAE---ASKMNAL

Q2QD30 Protein Ycf21.5e-1040.71Show/hide
Query:  DRHSLLIIRQSLIHKPRVWLIVCLNFPSHGKPFSLRLTLSPREL------DDPSYLVKYLATNSYLPFITV----------------------------A
        +R + L   Q++ H          +FPSHGK FSLRL LSP  L         SYLVKYLATNSYLPFITV                             
Subjt:  DRHSLLIIRQSLIHKPRVWLIVCLNFPSHGKPFSLRLTLSPREL------DDPSYLVKYLATNSYLPFITV----------------------------A

Query:  NDSDDIDRDLEAE
        +DSDDIDRDL+ +
Subjt:  NDSDDIDRDLEAE

Arabidopsis top hitse value%identityAlignment
ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core9.2e-1145.92Show/hide
Query:  NFPSHGKPFSLRLTLSPREL--------DDPSYLVKYLATNSYLPFITV-------------------ANDSD------DIDRDLEAE---ASKMNAL
        +FPSHGKPFSLRL LSP              SYLVKYLATNSY+PFITV                    +DSD      DIDR+L+ E    + MNAL
Subjt:  NFPSHGKPFSLRLTLSPREL--------DDPSYLVKYLATNSYLPFITV-------------------ANDSD------DIDRDLEAE---ASKMNAL

ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core9.2e-1145.92Show/hide
Query:  NFPSHGKPFSLRLTLSPREL--------DDPSYLVKYLATNSYLPFITV-------------------ANDSD------DIDRDLEAE---ASKMNAL
        +FPSHGKPFSLRL LSP              SYLVKYLATNSY+PFITV                    +DSD      DIDR+L+ E    + MNAL
Subjt:  NFPSHGKPFSLRLTLSPREL--------DDPSYLVKYLATNSYLPFITV-------------------ANDSD------DIDRDLEAE---ASKMNAL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGATTTCGAGTCATCACCATCGATATCGACACATCTGAGATCGCCAAATATTCGGGAGTTCCTCTATTCATTCAATCCTTTTCCTTCTTCTTCTTGCTGTATATCTC
GTTCGTACACATCTTTTCTTTGTTTCTCGAGCCTATAGTATCCCACATCTTCACTTCATTCTTTATGGTTAAAGAATCTCTTTCTAGTTGCTCTGGAACAATTAGGAGAT
TCTCTAGAAGAAATAGGGTAGGGGTAGGGGGAGGGGTTTCCGCTTCTGGTGGCAACATGCTATGGGGTGGCGGTCCCTCTTATGGGAAAGACAGACATTCCTTGCTCATT
ATCAGACAATCACTTATTCACAAACCTCGTGTGTGGCTAATAGTTTGTTTGAATTTCCCATCTCATGGAAAACCCTTTTCCCTCCGCTTAACCCTATCCCCGCGGGAACT
GGACGATCCATCCTATTTGGTCAAATACCTAGCGACAAACTCCTATCTTCCTTTCATTACAGTGGCGAATGATAGTGACGATATCGACCGTGACCTTGAGGCTGAAGCTT
CTAAGATGAATGCGCTATGGATATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGATTTCGAGTCATCACCATCGATATCGACACATCTGAGATCGCCAAATATTCGGGAGTTCCTCTATTCATTCAATCCTTTTCCTTCTTCTTCTTGCTGTATATCTC
GTTCGTACACATCTTTTCTTTGTTTCTCGAGCCTATAGTATCCCACATCTTCACTTCATTCTTTATGGTTAAAGAATCTCTTTCTAGTTGCTCTGGAACAATTAGGAGAT
TCTCTAGAAGAAATAGGGTAGGGGTAGGGGGAGGGGTTTCCGCTTCTGGTGGCAACATGCTATGGGGTGGCGGTCCCTCTTATGGGAAAGACAGACATTCCTTGCTCATT
ATCAGACAATCACTTATTCACAAACCTCGTGTGTGGCTAATAGTTTGTTTGAATTTCCCATCTCATGGAAAACCCTTTTCCCTCCGCTTAACCCTATCCCCGCGGGAACT
GGACGATCCATCCTATTTGGTCAAATACCTAGCGACAAACTCCTATCTTCCTTTCATTACAGTGGCGAATGATAGTGACGATATCGACCGTGACCTTGAGGCTGAAGCTT
CTAAGATGAATGCGCTATGGATATGA
Protein sequenceShow/hide protein sequence
MRFRVITIDIDTSEIAKYSGVPLFIQSFSFFFLLYISFVHIFSLFLEPIVSHIFTSFFMVKESLSSCSGTIRRFSRRNRVGVGGGVSASGGNMLWGGGPSYGKDRHSLLI
IRQSLIHKPRVWLIVCLNFPSHGKPFSLRLTLSPRELDDPSYLVKYLATNSYLPFITVANDSDDIDRDLEAEASKMNALWI