CuGenDBv2

Gene ID	CmaCh08G006500
Organism	Cucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description	DNA-directed RNA polymerase subunit beta
Genome location	Cma_Chr08:3777109..3779981
RNA-Seq Expression	CmaCh08G006500
Synteny	CmaCh08G006500
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0009507 - chloroplast (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0032549 - ribonucleoside binding (molecular function)
InterPro domains	IPR007120 - DNA-directed RNA polymerase, subunit 2, hybrid-binding domain IPR015712 - DNA-directed RNA polymerase, subunit 2 IPR037033 - DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AEJ90756.1 RNA polymerase beta subunit, partial [Sisyrinchium macrocarpum subsp. macrocarpum]

3.3e-14

82.35

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Query:  GRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGY
        G    SGELAL K VLVAYMPWEGYNSEDAVLISERLVYEDIYTSFH+  Y
Subjt:  GRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGY

AEX94337.1 RNA polymerase beta subunit [Scadoxus cinnabarinus]

2.5e-14

79.25

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Query:  VSGRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGY
        V G     GELAL K VLVAYMPWEGYNSEDAVLISERLVYEDIYTSFH+  Y
Subjt:  VSGRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGY

KAF3625926.1 hypothetical protein FXO37_30605 [Capsicum annuum]

3.8e-15

77.97

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Query:  GRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGYGNMKFKLM
        G     GEL+L K VLVAYMPWEGYNSEDAVLISERLVYEDIYTSF    YGNMKF+LM
Subjt:  GRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGYGNMKFKLM

YP_009175759.1 RNA polymerase beta subunit [Astragalus mongholicus var. nakaianus]

3.3e-14

82.35

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Query:  GRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGY
        G    SGELAL K VLVAYMPWEGYNSEDAVLISERLVYEDIYTSFH+  Y
Subjt:  GRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGY

YP_009996519.1 RNA polymerase beta subunit [Oberonioides microtatantha]

1.9e-14

80.77

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Query:  SGRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGY
        SG     GELAL K VLVAYMPWEGYN EDAVLISERLVYEDIYTSFH+H Y
Subjt:  SGRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGY

TrEMBL top hits

e value

%identity

Alignment

A0A0S2IE41 DNA-directed RNA polymerase subunit beta

1.6e-14

82.35

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Query:  GRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGY
        G    SGELAL K VLVAYMPWEGYNSEDAVLISERLVYEDIYTSFH+  Y
Subjt:  GRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGY

A0A0S2IFG3 DNA-directed RNA polymerase subunit beta

1.6e-14

82.35

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Query:  GRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGY
        G    SGELAL K VLVAYMPWEGYNSEDAVLISERLVYEDIYTSFH+  Y
Subjt:  GRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGY

A0A7H0R3B3 DNA-directed RNA polymerase subunit beta

9.2e-15

80.77

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Query:  SGRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGY
        SG     GELAL K VLVAYMPWEGYN EDAVLISERLVYEDIYTSFH+H Y
Subjt:  SGRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGY

G0Y398 DNA-directed RNA polymerase (Fragment)

1.6e-14

82.35

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Query:  GRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGY
        G    SGELAL K VLVAYMPWEGYNSEDAVLISERLVYEDIYTSFH+  Y
Subjt:  GRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGY

H2F6Q4 DNA-directed RNA polymerase subunit beta

1.2e-14

79.25

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Query:  VSGRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGY
        V G     GELAL K VLVAYMPWEGYNSEDAVLISERLVYEDIYTSFH+  Y
Subjt:  VSGRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGY

SwissProt top hits

e value

%identity

Alignment

Q06RD9 DNA-directed RNA polymerase subunit beta

1.2e-16

80.39

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Query:  GRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGY
        G     GELAL K VLVAYMPWEGYNSEDAVLISERLVYEDIYTSFH+  Y
Subjt:  GRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGY

Q2MIJ5 DNA-directed RNA polymerase subunit beta

1.2e-16

80.39

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Query:  GRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGY
        G     GELAL K VLVAYMPWEGYNSEDAVLISERLVYEDIYTSFH+  Y
Subjt:  GRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGY

Q33C46 DNA-directed RNA polymerase subunit beta

1.2e-16

80.39

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Query:  GRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGY
        G     GELAL K VLVAYMPWEGYNSEDAVLISERLVYEDIYTSFH+  Y
Subjt:  GRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGY

Q3C1G7 DNA-directed RNA polymerase subunit beta

1.2e-16

80.39

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Query:  GRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGY
        G     GELAL K VLVAYMPWEGYNSEDAVLISERLVYEDIYTSFH+  Y
Subjt:  GRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGY

Q8S8X9 DNA-directed RNA polymerase subunit beta

1.2e-16

80.39

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Query:  GRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGY
        G     GELAL K VLVAYMPWEGYNSEDAVLISERLVYEDIYTSFH+  Y
Subjt:  GRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGY

Arabidopsis top hits

e value

%identity

Alignment

ATCG00190.1 RNA polymerase subunit beta

3.1e-15

72.55

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Query:  GRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGY
        G     GELAL K +LVAYMPWEGYN EDAVLISE LVY DIYTSFH+  Y
Subjt:  GRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGY

Sequences

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CDS sequence

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AGAGGAGAGTCAAATGAGAAGAAGGTAAAGCGACTAAACTGGAAGCAAAGCCGAAAGCGAAACCCTTTTCCTCTATTTATTACCTTCCCTTATTTATTGAGGGCAAATGT
TAGCGGACGGTGCTGCTTTAGTGGCGAACTTGCGTTGGTAAAAACCGTATTAGTAGCTTATATGCCATGGGAAGGTTACAATTCTGAAGATGCAGTACTAATTAGCGAGC
GTCTGGTATATGAAGATATTTATACTTCTTTCCACGTACATGGATACGGAAATATGAAATTCAAACTCATG

mRNA sequence

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Protein sequence

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RGESNEKKVKRLNWKQSRKRNPFPLFITFPYLLRANVSGRCCFSGELALVKTVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHVHGYGNMKFKLM

CmaCh08G006500 (gene) of Cucurbita maxima (Rimu) v1.1 genome