| GenBank top hits | e value | %identity | Alignment |
|---|
| QKX48463.1 RNA polymerase beta'' subunit [Luffa acutangula] | 1.3e-62 | 47.83 | Show/hide |
Query: RFITFQTQPIAIRTPFTCRSTSWICPLCYVRSPTHGDLVELGEPLGILVGQSIGEEPGTQLTLRTFHTGVEYEQGGLQNIYELLLMEKSNSMRIWFHTYT
RFITFQTQPI+IRTPFTCRSTSWIC LCY RSPTHGDLVELGE +GI+ GQSIG EPGTQLTLRTFHTG + G ++I + + + T T
Subjt: RFITFQTQPIAIRTPFTCRSTSWICPLCYVRSPTHGDLVELGEPLGILVGQSIGEEPGTQLTLRTFHTGVEYEQGGLQNIYELLLMEKSNSMRIWFHTYT
Query: PWASCLFVLLLYRLVSKESEDIIHNVTIPPK-----------KSEQVIAEIRAGTYTLSKKERVRKHIDSDSEKCIGYSPSLTKNKSF----MDIIRRFV
F+ + V+ ESEDIIHNVTIPPK +SEQVIAEIRAGTYTL+ KERVRKHI SDSE + +S + F + ++ +
Subjt: PWASCLFVLLLYRLVSKESEDIIHNVTIPPK-----------KSEQVIAEIRAGTYTLSKKERVRKHIDSDSEKCIGYSPSLTKNKSF----MDIIRRFV
Query: RMQCLF----------HSTSKDQDQINVHSLSVERKNISSLSVN--KVRHLMVRISLVKTKAEFLIIHHLIQSYLCTGQSNLTLP---FSTVILIDWQRG
+ L S KDQDQINVHSLSVER++ISSLSVN KVR L + + + LCTGQSNLT P L+ +R
Subjt: RMQCLF----------HSTSKDQDQINVHSLSVERKNISSLSVN--KVRHLMVRISLVKTKAEFLIIHHLIQSYLCTGQSNLTLP---FSTVILIDWQRG
Query: EEMDSSFKSLQEREKELPPPSMVFF---MEIVFLLISMILNTEERVKELLNMGLL---TIGMHSILKK
F+SLQEREKELPPPS + + +F S++ ++ + G+ TIG+HSILKK
Subjt: EEMDSSFKSLQEREKELPPPSMVFF---MEIVFLLISMILNTEERVKELLNMGLL---TIGMHSILKK
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| QZL38583.1 RNA polymerase beta'' subunit [Citrullus naudinianus] | 7.6e-63 | 47.55 | Show/hide |
Query: RFITFQTQPIAIRTPFTCRSTSWICPLCYVRSPTHGDLVELGEPLGILVGQSIGEEPGTQLTLRTFHTGVEYEQGGLQNIYELLLMEKSNSMRIWFHTYT
RFITFQTQPI+IRTPFTCRSTSWIC LCY RSPTHGDLVELGE +GI+ GQSIG EPGTQLTLRTFHTG + G ++I + + + T T
Subjt: RFITFQTQPIAIRTPFTCRSTSWICPLCYVRSPTHGDLVELGEPLGILVGQSIGEEPGTQLTLRTFHTGVEYEQGGLQNIYELLLMEKSNSMRIWFHTYT
Query: PWASCLFVLLLYRLVSKESEDIIHNVTIPPK-----------KSEQVIAEIRAGTYTLSKKERVRKHIDSDSEKCIGYSPSLTKNKSF----MDIIRRFV
F+ + V+ ESEDIIHNVTIPPK +SEQVIAEIRAGTYTL+ KERVRKHI SDSE + +S + F + ++ +
Subjt: PWASCLFVLLLYRLVSKESEDIIHNVTIPPK-----------KSEQVIAEIRAGTYTLSKKERVRKHIDSDSEKCIGYSPSLTKNKSF----MDIIRRFV
Query: RMQCLF----------HSTSKDQDQINVHSLSVERKNISSLSVN--KVRHLMVRISLVKTKAEFLIIHHLIQSYLCTGQSNLTLP---FSTVILIDWQRG
+ L S KDQDQINVHSLSVER+ SSLSVN KVRH + L A + + + LCTGQSN T P L+ +R
Subjt: RMQCLF----------HSTSKDQDQINVHSLSVERKNISSLSVN--KVRHLMVRISLVKTKAEFLIIHHLIQSYLCTGQSNLTLP---FSTVILIDWQRG
Query: EEMDSSFKSLQEREKELPPPSMVFF---MEIVFLLISMILNTEERVKELLNMGLL---TIGMHSILKK
F+SL+EREKELPPPS + + +F S++ ++ + G+ TIG+HSILKK
Subjt: EEMDSSFKSLQEREKELPPPSMVFF---MEIVFLLISMILNTEERVKELLNMGLL---TIGMHSILKK
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| YP_009456136.1 RNA polymerase beta'' subunit [Lagenaria siceraria] | 4.5e-63 | 47.83 | Show/hide |
Query: RFITFQTQPIAIRTPFTCRSTSWICPLCYVRSPTHGDLVELGEPLGILVGQSIGEEPGTQLTLRTFHTGVEYEQGGLQNIYELLLMEKSNSMRIWFHTYT
RFITFQTQPI+IRTPFTCRSTSWIC LCY RSPTHGDLVELGE +GI+ GQSIG EPGTQLTLRTFHTG + G ++I + + + T T
Subjt: RFITFQTQPIAIRTPFTCRSTSWICPLCYVRSPTHGDLVELGEPLGILVGQSIGEEPGTQLTLRTFHTGVEYEQGGLQNIYELLLMEKSNSMRIWFHTYT
Query: PWASCLFVLLLYRLVSKESEDIIHNVTIPPK-----------KSEQVIAEIRAGTYTLSKKERVRKHIDSDSEKCIGYSPSLTKNKSF----MDIIRRFV
F+ + V+ ESEDIIHNVTIPPK +SEQVIAEIRAGTYTL+ KERVRKHI SDSE + +S + F + ++ +
Subjt: PWASCLFVLLLYRLVSKESEDIIHNVTIPPK-----------KSEQVIAEIRAGTYTLSKKERVRKHIDSDSEKCIGYSPSLTKNKSF----MDIIRRFV
Query: RMQCLF----------HSTSKDQDQINVHSLSVERKNISSLSVN--KVRHLMVRISLVKTKAEFLIIHHLIQSYLCTGQSNLTLP---FSTVILIDWQRG
+ L S KDQDQINVHSLSVER+ ISSLSVN KVR + L + + + LCTGQSNLT P L+ +R
Subjt: RMQCLF----------HSTSKDQDQINVHSLSVERKNISSLSVN--KVRHLMVRISLVKTKAEFLIIHHLIQSYLCTGQSNLTLP---FSTVILIDWQRG
Query: EEMDSSFKSLQEREKELPPPSMVFF---MEIVFLLISMILNTEERVKELLNMGLL---TIGMHSILKK
F+SLQEREKELPPPS + + +F S++ ++ + G+ TIG+HSILKK
Subjt: EEMDSSFKSLQEREKELPPPSMVFF---MEIVFLLISMILNTEERVKELLNMGLL---TIGMHSILKK
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| YP_009560825.1 RpoC2 [Trichosanthes kirilowii] | 2.2e-62 | 48.24 | Show/hide |
Query: RFITFQTQPIAIRTPFTCRSTSWICPLCYVRSPTHGDLVELGEPLGILVGQSIGEEPGTQLTLRTFHTGVEYEQGGLQNIYELLLMEKSNSMRIWFHTYT
RFITFQTQPI+IRTPFTCRSTSWIC LCY RSPTHGDLVELGE +GI+ GQSIG EPGTQLTLRTFHTG + G ++I + + + T T
Subjt: RFITFQTQPIAIRTPFTCRSTSWICPLCYVRSPTHGDLVELGEPLGILVGQSIGEEPGTQLTLRTFHTGVEYEQGGLQNIYELLLMEKSNSMRIWFHTYT
Query: PWASCLFVLLLYRLVSKESEDIIHNVTIPPK-----------KSEQVIAEIRAGTYTLSKKERVRKHIDSDSEKCIGYSPSLTKNKSF----MDIIRRFV
F+ + V+ ESEDIIHNVTIPPK +SEQVIAEIRAGTYTL+ KERVRKHI SDSE + +S + F + ++ +
Subjt: PWASCLFVLLLYRLVSKESEDIIHNVTIPPK-----------KSEQVIAEIRAGTYTLSKKERVRKHIDSDSEKCIGYSPSLTKNKSF----MDIIRRFV
Query: RMQCLF----------HSTSKDQDQINVHSLSVERKNISSLSVN--KVRHLMVRISLVKTKAEFLIIHHLIQSYLCTGQSNLTLP---FSTVILIDWQRG
+ L S KDQDQINVHSLSVER+ ISSLSVN KVR L + + + LCTGQSNLT P L+ +R
Subjt: RMQCLF----------HSTSKDQDQINVHSLSVERKNISSLSVN--KVRHLMVRISLVKTKAEFLIIHHLIQSYLCTGQSNLTLP---FSTVILIDWQRG
Query: EEMDSSFKSLQEREKELPPPSMVFFMEI----VFLLISMILNTEERVKELLNMGLL---TIGMHSILKK
F+SL EREKELPPPS + MEI +F S++ ++ + G+ TIG+HSILKK
Subjt: EEMDSSFKSLQEREKELPPPSMVFFMEI----VFLLISMILNTEERVKELLNMGLL---TIGMHSILKK
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| YP_009738191.1 RNA polymerase beta'' subunit [Siraitia siamensis] | 1.7e-62 | 47.83 | Show/hide |
Query: RFITFQTQPIAIRTPFTCRSTSWICPLCYVRSPTHGDLVELGEPLGILVGQSIGEEPGTQLTLRTFHTGVEYEQGGLQNIYELLLMEKSNSMRIWFHTYT
RFITFQTQPI+IRTPFTCRSTSWIC LCY RSPTHGDLVELGE +GI+ GQSIG EPGTQLTLRTFHTG + G ++I + + + T T
Subjt: RFITFQTQPIAIRTPFTCRSTSWICPLCYVRSPTHGDLVELGEPLGILVGQSIGEEPGTQLTLRTFHTGVEYEQGGLQNIYELLLMEKSNSMRIWFHTYT
Query: PWASCLFVLLLYRLVSKESEDIIHNVTIPPK-----------KSEQVIAEIRAGTYTLSKKERVRKHIDSDSEKCIGYSPSLTKNKSF----MDIIRRFV
F+ + V+ ESEDIIHNVTIPPK +SEQVIAEIRAGTYTL+ KERVRKHI SDSE + +S + F + ++ +
Subjt: PWASCLFVLLLYRLVSKESEDIIHNVTIPPK-----------KSEQVIAEIRAGTYTLSKKERVRKHIDSDSEKCIGYSPSLTKNKSF----MDIIRRFV
Query: RMQCLF----------HSTSKDQDQINVHSLSVERKNISSLSVN--KVRHLMVRISLVKTKAEFLIIHHLIQSYLCTGQSNLTLP---FSTVILIDWQRG
+ L S KDQDQINVHSLSVER+ ISSLSVN KVR L + + + LCTGQSNLT P L+ +R
Subjt: RMQCLF----------HSTSKDQDQINVHSLSVERKNISSLSVN--KVRHLMVRISLVKTKAEFLIIHHLIQSYLCTGQSNLTLP---FSTVILIDWQRG
Query: EEMDSSFKSLQEREKELPPPSMVFF---MEIVFLLISMILNTEERVKELLNMGLL---TIGMHSILKK
F+SLQEREKELPPPS + + +F S++ ++ + G+ TIG+HSILKK
Subjt: EEMDSSFKSLQEREKELPPPSMVFF---MEIVFLLISMILNTEERVKELLNMGLL---TIGMHSILKK
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A2I6C070 DNA-directed RNA polymerase subunit beta'' | 2.2e-63 | 47.83 | Show/hide |
Query: RFITFQTQPIAIRTPFTCRSTSWICPLCYVRSPTHGDLVELGEPLGILVGQSIGEEPGTQLTLRTFHTGVEYEQGGLQNIYELLLMEKSNSMRIWFHTYT
RFITFQTQPI+IRTPFTCRSTSWIC LCY RSPTHGDLVELGE +GI+ GQSIG EPGTQLTLRTFHTG + G ++I + + + T T
Subjt: RFITFQTQPIAIRTPFTCRSTSWICPLCYVRSPTHGDLVELGEPLGILVGQSIGEEPGTQLTLRTFHTGVEYEQGGLQNIYELLLMEKSNSMRIWFHTYT
Query: PWASCLFVLLLYRLVSKESEDIIHNVTIPPK-----------KSEQVIAEIRAGTYTLSKKERVRKHIDSDSEKCIGYSPSLTKNKSF----MDIIRRFV
F+ + V+ ESEDIIHNVTIPPK +SEQVIAEIRAGTYTL+ KERVRKHI SDSE + +S + F + ++ +
Subjt: PWASCLFVLLLYRLVSKESEDIIHNVTIPPK-----------KSEQVIAEIRAGTYTLSKKERVRKHIDSDSEKCIGYSPSLTKNKSF----MDIIRRFV
Query: RMQCLF----------HSTSKDQDQINVHSLSVERKNISSLSVN--KVRHLMVRISLVKTKAEFLIIHHLIQSYLCTGQSNLTLP---FSTVILIDWQRG
+ L S KDQDQINVHSLSVER+ ISSLSVN KVR + L + + + LCTGQSNLT P L+ +R
Subjt: RMQCLF----------HSTSKDQDQINVHSLSVERKNISSLSVN--KVRHLMVRISLVKTKAEFLIIHHLIQSYLCTGQSNLTLP---FSTVILIDWQRG
Query: EEMDSSFKSLQEREKELPPPSMVFF---MEIVFLLISMILNTEERVKELLNMGLL---TIGMHSILKK
F+SLQEREKELPPPS + + +F S++ ++ + G+ TIG+HSILKK
Subjt: EEMDSSFKSLQEREKELPPPSMVFF---MEIVFLLISMILNTEERVKELLNMGLL---TIGMHSILKK
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| A0A6C0U903 DNA-directed RNA polymerase subunit beta'' | 8.2e-63 | 47.83 | Show/hide |
Query: RFITFQTQPIAIRTPFTCRSTSWICPLCYVRSPTHGDLVELGEPLGILVGQSIGEEPGTQLTLRTFHTGVEYEQGGLQNIYELLLMEKSNSMRIWFHTYT
RFITFQTQPI+IRTPFTCRSTSWIC LCY RSPTHGDLVELGE +GI+ GQSIG EPGTQLTLRTFHTG + G ++I + + + T T
Subjt: RFITFQTQPIAIRTPFTCRSTSWICPLCYVRSPTHGDLVELGEPLGILVGQSIGEEPGTQLTLRTFHTGVEYEQGGLQNIYELLLMEKSNSMRIWFHTYT
Query: PWASCLFVLLLYRLVSKESEDIIHNVTIPPK-----------KSEQVIAEIRAGTYTLSKKERVRKHIDSDSEKCIGYSPSLTKNKSF----MDIIRRFV
F+ + V+ ESEDIIHNVTIPPK +SEQVIAEIRAGTYTL+ KERVRKHI SDSE + +S + F + ++ +
Subjt: PWASCLFVLLLYRLVSKESEDIIHNVTIPPK-----------KSEQVIAEIRAGTYTLSKKERVRKHIDSDSEKCIGYSPSLTKNKSF----MDIIRRFV
Query: RMQCLF----------HSTSKDQDQINVHSLSVERKNISSLSVN--KVRHLMVRISLVKTKAEFLIIHHLIQSYLCTGQSNLTLP---FSTVILIDWQRG
+ L S KDQDQINVHSLSVER+ ISSLSVN KVR L + + + LCTGQSNLT P L+ +R
Subjt: RMQCLF----------HSTSKDQDQINVHSLSVERKNISSLSVN--KVRHLMVRISLVKTKAEFLIIHHLIQSYLCTGQSNLTLP---FSTVILIDWQRG
Query: EEMDSSFKSLQEREKELPPPSMVFF---MEIVFLLISMILNTEERVKELLNMGLL---TIGMHSILKK
F+SLQEREKELPPPS + + +F S++ ++ + G+ TIG+HSILKK
Subjt: EEMDSSFKSLQEREKELPPPSMVFF---MEIVFLLISMILNTEERVKELLNMGLL---TIGMHSILKK
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| A0A6H0EXH0 DNA-directed RNA polymerase subunit beta'' | 1.1e-62 | 47.28 | Show/hide |
Query: RFITFQTQPIAIRTPFTCRSTSWICPLCYVRSPTHGDLVELGEPLGILVGQSIGEEPGTQLTLRTFHTGVEYEQGGLQNIYELLLMEKSNSMRIWFHTYT
RFITFQTQPI+IRTPFTCRSTSWIC LCY RSPTHGDLVELGE +GI+ GQSIG EPGTQLTLRTFHTG + G ++I + + + T T
Subjt: RFITFQTQPIAIRTPFTCRSTSWICPLCYVRSPTHGDLVELGEPLGILVGQSIGEEPGTQLTLRTFHTGVEYEQGGLQNIYELLLMEKSNSMRIWFHTYT
Query: PWASCLFVLLLYRLVSKESEDIIHNVTIPPK-----------KSEQVIAEIRAGTYTLSKKERVRKHIDSDSEKCIGYSPS--------------LTKNK
F+ + V+ ESEDIIHNVTIPPK +SEQVIAEIRAGTYTL+ KERVRKHI SDSE + +S + L K
Subjt: PWASCLFVLLLYRLVSKESEDIIHNVTIPPK-----------KSEQVIAEIRAGTYTLSKKERVRKHIDSDSEKCIGYSPS--------------LTKNK
Query: SFMDIIRRFVRMQCLFHSTSKDQDQINVHSLSVERKNISSLSVN--KVRHLMVRISLVKTKAEFLIIHHLIQSYLCTGQSNLTLP---FSTVILIDWQRG
+ + S KDQDQINVHSLSVER+ ISSLSVN +VR + L K + + + +CTGQ NLT P L+ +R
Subjt: SFMDIIRRFVRMQCLFHSTSKDQDQINVHSLSVERKNISSLSVN--KVRHLMVRISLVKTKAEFLIIHHLIQSYLCTGQSNLTLP---FSTVILIDWQRG
Query: EEMDSSFKSLQEREKELPPPSMVFF---MEIVFLLISMILNTEERVKELLNMGLL---TIGMHSILKK
F+SLQEREKELPPPS + + +F S++ ++ + G+ TIG+HSILKK
Subjt: EEMDSSFKSLQEREKELPPPSMVFF---MEIVFLLISMILNTEERVKELLNMGLL---TIGMHSILKK
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| A0A7D4Y3G2 DNA-directed RNA polymerase subunit beta'' | 6.3e-63 | 47.83 | Show/hide |
Query: RFITFQTQPIAIRTPFTCRSTSWICPLCYVRSPTHGDLVELGEPLGILVGQSIGEEPGTQLTLRTFHTGVEYEQGGLQNIYELLLMEKSNSMRIWFHTYT
RFITFQTQPI+IRTPFTCRSTSWIC LCY RSPTHGDLVELGE +GI+ GQSIG EPGTQLTLRTFHTG + G ++I + + + T T
Subjt: RFITFQTQPIAIRTPFTCRSTSWICPLCYVRSPTHGDLVELGEPLGILVGQSIGEEPGTQLTLRTFHTGVEYEQGGLQNIYELLLMEKSNSMRIWFHTYT
Query: PWASCLFVLLLYRLVSKESEDIIHNVTIPPK-----------KSEQVIAEIRAGTYTLSKKERVRKHIDSDSEKCIGYSPSLTKNKSF----MDIIRRFV
F+ + V+ ESEDIIHNVTIPPK +SEQVIAEIRAGTYTL+ KERVRKHI SDSE + +S + F + ++ +
Subjt: PWASCLFVLLLYRLVSKESEDIIHNVTIPPK-----------KSEQVIAEIRAGTYTLSKKERVRKHIDSDSEKCIGYSPSLTKNKSF----MDIIRRFV
Query: RMQCLF----------HSTSKDQDQINVHSLSVERKNISSLSVN--KVRHLMVRISLVKTKAEFLIIHHLIQSYLCTGQSNLTLP---FSTVILIDWQRG
+ L S KDQDQINVHSLSVER++ISSLSVN KVR L + + + LCTGQSNLT P L+ +R
Subjt: RMQCLF----------HSTSKDQDQINVHSLSVERKNISSLSVN--KVRHLMVRISLVKTKAEFLIIHHLIQSYLCTGQSNLTLP---FSTVILIDWQRG
Query: EEMDSSFKSLQEREKELPPPSMVFF---MEIVFLLISMILNTEERVKELLNMGLL---TIGMHSILKK
F+SLQEREKELPPPS + + +F S++ ++ + G+ TIG+HSILKK
Subjt: EEMDSSFKSLQEREKELPPPSMVFF---MEIVFLLISMILNTEERVKELLNMGLL---TIGMHSILKK
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| A0A7G9IT27 DNA-directed RNA polymerase subunit beta'' | 2.2e-63 | 47.83 | Show/hide |
Query: RFITFQTQPIAIRTPFTCRSTSWICPLCYVRSPTHGDLVELGEPLGILVGQSIGEEPGTQLTLRTFHTGVEYEQGGLQNIYELLLMEKSNSMRIWFHTYT
RFITFQTQPI+IRTPFTCRSTSWIC LCY RSPTHGDLVELGE +GI+ GQSIG EPGTQLTLRTFHTG + G ++I + + + T T
Subjt: RFITFQTQPIAIRTPFTCRSTSWICPLCYVRSPTHGDLVELGEPLGILVGQSIGEEPGTQLTLRTFHTGVEYEQGGLQNIYELLLMEKSNSMRIWFHTYT
Query: PWASCLFVLLLYRLVSKESEDIIHNVTIPPK-----------KSEQVIAEIRAGTYTLSKKERVRKHIDSDSEKCIGYSPSLTKNKSF----MDIIRRFV
F+ + V+ ESEDIIHNVTIPPK +SEQVIAEIRAGTYTL+ KERVRKHI SDSE + +S + F + ++ +
Subjt: PWASCLFVLLLYRLVSKESEDIIHNVTIPPK-----------KSEQVIAEIRAGTYTLSKKERVRKHIDSDSEKCIGYSPSLTKNKSF----MDIIRRFV
Query: RMQCLF----------HSTSKDQDQINVHSLSVERKNISSLSVN--KVRHLMVRISLVKTKAEFLIIHHLIQSYLCTGQSNLTLP---FSTVILIDWQRG
+ L S KDQDQINVHSLSVER+ ISSLSVN KVR + L + + + LCTGQSNLT P L+ +R
Subjt: RMQCLF----------HSTSKDQDQINVHSLSVERKNISSLSVN--KVRHLMVRISLVKTKAEFLIIHHLIQSYLCTGQSNLTLP---FSTVILIDWQRG
Query: EEMDSSFKSLQEREKELPPPSMVFF---MEIVFLLISMILNTEERVKELLNMGLL---TIGMHSILKK
F+SLQEREKELPPPS + + +F S++ ++ + G+ TIG+HSILKK
Subjt: EEMDSSFKSLQEREKELPPPSMVFF---MEIVFLLISMILNTEERVKELLNMGLL---TIGMHSILKK
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| A4GYP8 DNA-directed RNA polymerase subunit beta'' | 3.9e-54 | 42.55 | Show/hide |
Query: RFITFQTQPIAIRTPFTCRSTSWICPLCYVRSPTHGDLVELGEPLGILVGQSIGEEPGTQLTLRTFHTGVEYEQGGLQNIYELLLMEKSNSMRIWFHTYT
RFITF+TQPI+IRTPFTCRSTSWIC LCY RSPTHGDLVELGE +GI+ GQSIG EPGTQLTLRTFHTG + G +++ + + + T T
Subjt: RFITFQTQPIAIRTPFTCRSTSWICPLCYVRSPTHGDLVELGEPLGILVGQSIGEEPGTQLTLRTFHTGVEYEQGGLQNIYELLLMEKSNSMRIWFHTYT
Query: PWASCLFVLLLYRLVSKESEDIIHNVTIPPK-----------KSEQVIAEIRAGTYTLSKKERVRKHIDSDSEKCIGYSPS--------------LTKNK
F+ + V+ ES+DIIHNVTIPPK +SEQVIAEIR+GTYTL+ ERVRKHI SDSE + +S L K
Subjt: PWASCLFVLLLYRLVSKESEDIIHNVTIPPK-----------KSEQVIAEIRAGTYTLSKKERVRKHIDSDSEKCIGYSPS--------------LTKNK
Query: SFMDIIRRFVRMQCLFHSTSKDQDQINVHSLSVERKNISSLSVN--KVRHLMVR--ISLVKTKAEFLIIHHLIQSYLCTGQSNLTLPFSTVILIDWQRGE
+ R + S KDQDQINVHSLSVER IS+ SVN KV+H +S K ++ + + +CTG T+ L+ +R
Subjt: SFMDIIRRFVRMQCLFHSTSKDQDQINVHSLSVERKNISSLSVN--KVRHLMVR--ISLVKTKAEFLIIHHLIQSYLCTGQSNLTLPFSTVILIDWQRGE
Query: EMDSSFKSLQEREK--------ELPPPSMVFFMEIVFLLISMILNTEERVKELLNMGLLTIGMHSILKK
F+S+QE+E E+ P + +F +F + + R K + IG+HSI+KK
Subjt: EMDSSFKSLQEREK--------ELPPPSMVFFMEIVFLLISMILNTEERVKELLNMGLLTIGMHSILKK
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| B1A925 DNA-directed RNA polymerase subunit beta'' | 6.1e-55 | 43.36 | Show/hide |
Query: RFITFQTQPIAIRTPFTCRSTSWICPLCYVRSPTHGDLVELGEPLGILVGQSIGEEPGTQLTLRTFHTGVEYEQGGLQNIYELLLMEKSNSMRIWFHTYT
RFITF+TQ I+IRTPFTCRSTSWIC LCY RSPTHGDLVELGE +GI+ GQSIG EPGTQLTLRTFHTG + G +++ + + + T T
Subjt: RFITFQTQPIAIRTPFTCRSTSWICPLCYVRSPTHGDLVELGEPLGILVGQSIGEEPGTQLTLRTFHTGVEYEQGGLQNIYELLLMEKSNSMRIWFHTYT
Query: PWASCLFVLLLYRLVSKESEDIIHNVTIPPK-----------KSEQVIAEIRAGTYTLSKKERVRKHIDSDSEKCIGYSPS--------------LTKNK
F+ + V ESEDIIHNVTIPPK +SEQVIAEIRAGTYTL+ KERVRKHI S+SE + +S L K
Subjt: PWASCLFVLLLYRLVSKESEDIIHNVTIPPK-----------KSEQVIAEIRAGTYTLSKKERVRKHIDSDSEKCIGYSPS--------------LTKNK
Query: SFMDIIRRFVRMQCLFHSTSKDQDQINVHSLSVERKNISSLSVN--KVRHLMVRISLVKTKAEFLIIHHLIQSYLCTGQSNLTLPFSTV----ILIDWQR
+ R + S KDQDQ+N+HSLSVE+++ISSL+VN + RH + K + + L TG NL + F+++ L+ +R
Subjt: SFMDIIRRFVRMQCLFHSTSKDQDQINVHSLSVERKNISSLSVN--KVRHLMVRISLVKTKAEFLIIHHLIQSYLCTGQSNLTLPFSTV----ILIDWQR
Query: GEEMDSSFKSLQEREKELPPPSMVFF---MEIVFLLISMILNTEERVKELLNMGLL---TIGMHSILKK
F+S+QE+EKEL P S + + +F S++ ++ + G+L TIG HSI+KK
Subjt: GEEMDSSFKSLQEREKELPPPSMVFF---MEIVFLLISMILNTEERVKELLNMGLL---TIGMHSILKK
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| B1NWE0 DNA-directed RNA polymerase subunit beta'' | 3.6e-55 | 42.12 | Show/hide |
Query: RFITFQTQPIAIRTPFTCRSTSWICPLCYVRSPTHGDLVELGEPLGILVGQSIGEEPGTQLTLRTFHTGVEYEQGGLQNIYELLLMEKSNSMRIWFHTYT
RFITF+TQ I+IRTPFTCRSTSWIC LCY RSPTHGDLVELGE +GI+ GQSIG EPGTQLTLRTFHTG + G +++ + + + T
Subjt: RFITFQTQPIAIRTPFTCRSTSWICPLCYVRSPTHGDLVELGEPLGILVGQSIGEEPGTQLTLRTFHTGVEYEQGGLQNIYELLLMEKSNSMRIWFHTYT
Query: PWASCLFVLLLYRLVSKESEDIIHNVTIPPK-----------KSEQVIAEIRAGTYTLSKKERVRKHIDSDSEKCIGYSPS--------------LTKNK
F+ + V+ +S+DIIHNVTIPPK +SEQVIAEIRAG YTL+ KE+VRKHI SDSE + +S L K
Subjt: PWASCLFVLLLYRLVSKESEDIIHNVTIPPK-----------KSEQVIAEIRAGTYTLSKKERVRKHIDSDSEKCIGYSPS--------------LTKNK
Query: SFMDIIRRFVRMQCLFHSTSKDQDQINVHSLSVERKNISSLSVN--KVRHLMVRISLVKTKAEFLIIHHLIQSYLCTGQSNL---TLPFSTVILIDWQRG
+ R + S KDQDQ+NVHSLSV+R+ ISS SVN +V+H K + + + +CTG NL T+ + L+ +R
Subjt: SFMDIIRRFVRMQCLFHSTSKDQDQINVHSLSVERKNISSLSVN--KVRHLMVRISLVKTKAEFLIIHHLIQSYLCTGQSNL---TLPFSTVILIDWQRG
Query: EEMDSSFKSLQEREKELPPPSMVFF---MEIVFLLISMILNTEERVKELLNMGLL---TIGMHSILKK
+ F+S+QEREKEL S + + +F S+ ++ + G+ IG+HSI+KK
Subjt: EEMDSSFKSLQEREKELPPPSMVFF---MEIVFLLISMILNTEERVKELLNMGLL---TIGMHSILKK
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| Q14FG7 DNA-directed RNA polymerase subunit beta'' | 2.0e-53 | 42.28 | Show/hide |
Query: RFITFQTQPIAIRTPFTCRSTSWICPLCYVRSPTHGDLVELGEPLGILVGQSIGEEPGTQLTLRTFHTGVEYEQGGLQNIYELLLMEKSNSMRIWFHTYT
RFITF+TQPI+IRTPFTCRSTSWIC LCY RSPTHGDLVELGE +GI+ GQSIG EPGTQLTLRTFHTG + G +++ + + + T T
Subjt: RFITFQTQPIAIRTPFTCRSTSWICPLCYVRSPTHGDLVELGEPLGILVGQSIGEEPGTQLTLRTFHTGVEYEQGGLQNIYELLLMEKSNSMRIWFHTYT
Query: PWASCLFVLLLYRLVSKESEDIIHNVTIPPK-----------KSEQVIAEIRAGTYTLSKKERVRKHIDSDSEKCIGYSPS--------------LTKNK
F+ + V+ ES+DIIHNVTIPPK +SEQVIAEIR+GTYTL+ ERVRKHI SDSE + +S L K
Subjt: PWASCLFVLLLYRLVSKESEDIIHNVTIPPK-----------KSEQVIAEIRAGTYTLSKKERVRKHIDSDSEKCIGYSPS--------------LTKNK
Query: SFMDIIRRFVRMQCLFHSTSKDQDQINVHSLSVERKNISSLSVN--KVRHLMVR--ISLVKTKAEFLIIHHLIQSYLCTGQSNLTLPFSTVILIDWQRGE
+ R + S KDQDQINVHSLSVER IS+ S N KV+H +S K ++ + + +CTG T+ L+ +R
Subjt: SFMDIIRRFVRMQCLFHSTSKDQDQINVHSLSVERKNISSLSVN--KVRHLMVR--ISLVKTKAEFLIIHHLIQSYLCTGQSNLTLPFSTVILIDWQRGE
Query: EMDSSFKSLQEREK--------ELPPPSMVFFMEIVFLLISMILNTEERVKELLNMGLLTIGMHSILKK
F+S+QE+E E+ P + +F +F + + R K + IG+HSI+KK
Subjt: EMDSSFKSLQEREK--------ELPPPSMVFFMEIVFLLISMILNTEERVKELLNMGLLTIGMHSILKK
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| Q4VZP3 DNA-directed RNA polymerase subunit beta'' | 1.4e-62 | 47.01 | Show/hide |
Query: RFITFQTQPIAIRTPFTCRSTSWICPLCYVRSPTHGDLVELGEPLGILVGQSIGEEPGTQLTLRTFHTGVEYEQGGLQNIYELLLMEKSNSMRIWFHTYT
RFITFQTQPI+IRTPFTCRSTSWIC LCY RSPTHGDLVELGE +GI+ GQSIG EPGTQLTLRTFHTG + G ++I + + + T T
Subjt: RFITFQTQPIAIRTPFTCRSTSWICPLCYVRSPTHGDLVELGEPLGILVGQSIGEEPGTQLTLRTFHTGVEYEQGGLQNIYELLLMEKSNSMRIWFHTYT
Query: PWASCLFVLLLYRLVSKESEDIIHNVTIPPK-----------KSEQVIAEIRAGTYTLSKKERVRKHIDSDSEKCIGYSPSLTKNKSF----MDIIRRFV
F+ + V+ ESEDIIHNVTIPPK +SEQVIAEIRAGTYTL+ KERVRKHI SDSE + +S + F + ++ +
Subjt: PWASCLFVLLLYRLVSKESEDIIHNVTIPPK-----------KSEQVIAEIRAGTYTLSKKERVRKHIDSDSEKCIGYSPSLTKNKSF----MDIIRRFV
Query: RMQCLF----------HSTSKDQDQINVHSLSVERKNISSLSVN--KVRHLMVRISLVKTKAEFLIIHHLIQSYLCTGQSNLTLP---FSTVILIDWQRG
+ L S KDQDQINVHSL VER+ ISSLSVN KV L + + + LCTGQSNLT P L+ +R
Subjt: RMQCLF----------HSTSKDQDQINVHSLSVERKNISSLSVN--KVRHLMVRISLVKTKAEFLIIHHLIQSYLCTGQSNLTLP---FSTVILIDWQRG
Query: EEMDSSFKSLQEREKELPPPSMVFF---MEIVFLLISMILNTEERVKELLNMGLL---TIGMHSILKK
F+SLQEREKEL PPS + + +F S++ ++ + G+ TIG+HSILKK
Subjt: EEMDSSFKSLQEREKELPPPSMVFF---MEIVFLLISMILNTEERVKELLNMGLL---TIGMHSILKK
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| Arabidopsis top hits | e value | %identity | Alignment |
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| AT3G57660.1 nuclear RNA polymerase A1 | 1.6e-05 | 29.05 | Show/hide |
Query: VRSPTHGDLVELGEPLGILVGQSIGEEPGTQLTLRTFHTGVEYEQG---GLQNIYELLLMEKSNSMRIWFHTYTPWASCLFVL---------LLYRLVSK
V+S L + GEP+G+L QS+G EP TQ+TL TFH E G+ + E+L+ +N TP +C + + RL
Subjt: VRSPTHGDLVELGEPLGILVGQSIGEEPGTQLTLRTFHTGVEYEQG---GLQNIYELLLMEKSNSMRIWFHTYTPWASCLFVL---------LLYRLVSK
Query: ESEDIIHNV---TIPPKKSEQVIAEIRAGTYTLSKKERVRKHIDSDSE
DII ++ +P E + I L K E KH D E
Subjt: ESEDIIHNV---TIPPKKSEQVIAEIRAGTYTLSKKERVRKHIDSDSE
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| ATCG00170.1 DNA-directed RNA polymerase family protein | 2.1e-50 | 43.61 | Show/hide |
Query: RFITFQTQPIAIRTPFTCRSTSWICPLCYVRSPTHGDLVELGEPLGILVGQSIGEEPGTQLTLRTFHTGVEYEQGGLQNIYELLLMEKSNSMRIWFHTYT
R ITF TQ I+IRTPFTCRSTSWIC LCY RSPTHGDLVELGE +GI+ GQSIG EPGTQLTLRTFHTG + G +++ + + + T T
Subjt: RFITFQTQPIAIRTPFTCRSTSWICPLCYVRSPTHGDLVELGEPLGILVGQSIGEEPGTQLTLRTFHTGVEYEQGGLQNIYELLLMEKSNSMRIWFHTYT
Query: PWASCLFVLLLYRLVSKESEDIIHNVTIPPK-----------KSEQVIAEIRAGTYTLSKKERVRKHIDSDSEKCIGYSPSLTKNKSF----MDIIRRFV
F+ + V ESEDIIH+VTIPPK +SEQVIAEIR GTYT KERVRK+I SDSE + +S ++ F + ++ +
Subjt: PWASCLFVLLLYRLVSKESEDIIHNVTIPPK-----------KSEQVIAEIRAGTYTLSKKERVRKHIDSDSEKCIGYSPSLTKNKSF----MDIIRRFV
Query: RMQCLF----------HSTSKDQDQINVHSLSVERKNISSLSVNKVRHLMVRISLVKTKAEFLIIHHLIQSYLCTGQSNLTLPFSTVI-----LIDWQRG
+ L S KDQDQ+N+ LS ERK+ISSLSVN + S + L I+ + G S+ L +S + L+ +R
Subjt: RMQCLF----------HSTSKDQDQINVHSLSVERKNISSLSVNKVRHLMVRISLVKTKAEFLIIHHLIQSYLCTGQSNLTLPFSTVI-----LIDWQRG
Query: EEMDSSFKSLQEREKELPPPS
F+S+QE+EKE P S
Subjt: EEMDSSFKSLQEREKELPPPS
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| ATCG00180.1 DNA-directed RNA polymerase family protein | 7.0e-14 | 79.07 | Show/hide |
Query: LVYCDEKLLEEAVDTLIDNGIRGQPMRDGHNKGYKSFSDTLMG
LV C EKL++EAVDTL+DNGIRGQPMRDGHNK YKSFSD + G
Subjt: LVYCDEKLLEEAVDTLIDNGIRGQPMRDGHNKGYKSFSDTLMG
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| ATCG00180.1 DNA-directed RNA polymerase family protein | 1.7e-12 | 86.84 | Show/hide |
Query: LACPVTHVWYLKRLPSYIGNPLALDKPLKELEGLVYCD
L CPVTHVWYLKRLPSYI N LDKPLKELEGLVYCD
Subjt: LACPVTHVWYLKRLPSYIGNPLALDKPLKELEGLVYCD
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| ATCG00180.1 DNA-directed RNA polymerase family protein | 3.7e-07 | 64.58 | Show/hide |
Query: LAVHVPFSLEVQAEADAFTYVFSSESLDFSYWGDPISVPTQDMLIGLY
+AVHVP SLE QAEA +FS +L GDPISVPTQDMLIGLY
Subjt: LAVHVPFSLEVQAEADAFTYVFSSESLDFSYWGDPISVPTQDMLIGLY
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