CuGenDBv2

Gene ID	CmaCh08G006540
Organism	Cucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description	DNA-directed RNA polymerase subunit beta''
Genome location	Cma_Chr08:3786323..3786839
RNA-Seq Expression	CmaCh08G006540
Synteny	CmaCh08G006540
Gene Ontology terms	GO:0009536 - plastid (cellular component) GO:0016779 - nucleotidyltransferase activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

ALO22384.1 RpoC2 [Cucurbita moschata]

2.4e-26

65.25

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Query:  PQDLYLLQERENLELR--------------------FRLV--YCWLNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKTETSYIRKRQDPAGSRL
        PQD  LLQER+NLELR                     +LV     LNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVK++TSYIRKRQDP+GS L
Subjt:  PQDLYLLQERENLELR--------------------FRLV--YCWLNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKTETSYIRKRQDPAGSRL

Query:  IFHNEADRT--NPYQSIF
        IF+NE+DRT  NP+ SI+
Subjt:  IFHNEADRT--NPYQSIF

ALO22570.1 RpoC2 [Cucurbita pepo subsp. fraterna]

2.4e-26

65.25

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Query:  PQDLYLLQERENLELR--------------------FRLV--YCWLNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKTETSYIRKRQDPAGSRL
        PQD  LLQER+NLELR                     +LV     LNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVK++TSYIRKRQDP+GS L
Subjt:  PQDLYLLQERENLELR--------------------FRLV--YCWLNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKTETSYIRKRQDPAGSRL

Query:  IFHNEADRT--NPYQSIF
        IF+NE+DRT  NP+ SI+
Subjt:  IFHNEADRT--NPYQSIF

ALO22869.1 RpoC2 [Cucurbita pedatifolia]

2.4e-26

65.25

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Query:  PQDLYLLQERENLELR--------------------FRLV--YCWLNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKTETSYIRKRQDPAGSRL
        PQD  LLQER+NLELR                     +LV     LNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVK++TSYIRKRQDP+GS L
Subjt:  PQDLYLLQERENLELR--------------------FRLV--YCWLNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKTETSYIRKRQDPAGSRL

Query:  IFHNEADRT--NPYQSIF
        IF+NE+DRT  NP+ SI+
Subjt:  IFHNEADRT--NPYQSIF

YP_009447525.1 RNA polymerase beta'' subunit [Cucurbita moschata]

2.4e-26

65.25

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Query:  PQDLYLLQERENLELR--------------------FRLV--YCWLNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKTETSYIRKRQDPAGSRL
        PQD  LLQER+NLELR                     +LV     LNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVK++TSYIRKRQDP+GS L
Subjt:  PQDLYLLQERENLELR--------------------FRLV--YCWLNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKTETSYIRKRQDPAGSRL

Query:  IFHNEADRT--NPYQSIF
        IF+NE+DRT  NP+ SI+
Subjt:  IFHNEADRT--NPYQSIF

YP_009505070.1 RNA polymerase beta'' subunit [Cucurbita pepo]

2.4e-26

65.25

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Query:  PQDLYLLQERENLELR--------------------FRLV--YCWLNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKTETSYIRKRQDPAGSRL
        PQD  LLQER+NLELR                     +LV     LNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVK++TSYIRKRQDP+GS L
Subjt:  PQDLYLLQERENLELR--------------------FRLV--YCWLNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKTETSYIRKRQDPAGSRL

Query:  IFHNEADRT--NPYQSIF
        IF+NE+DRT  NP+ SI+
Subjt:  IFHNEADRT--NPYQSIF

TrEMBL top hits

e value

%identity

Alignment

A0A0S2IFZ6 DNA-directed RNA polymerase

1.2e-26

65.25

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Query:  PQDLYLLQERENLELR--------------------FRLV--YCWLNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKTETSYIRKRQDPAGSRL
        PQD  LLQER+NLELR                     +LV     LNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVK++TSYIRKRQDP+GS L
Subjt:  PQDLYLLQERENLELR--------------------FRLV--YCWLNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKTETSYIRKRQDPAGSRL

Query:  IFHNEADRT--NPYQSIF
        IF+NE+DRT  NP+ SI+
Subjt:  IFHNEADRT--NPYQSIF

A0A0S2IGZ0 DNA-directed RNA polymerase

1.2e-26

65.25

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Query:  PQDLYLLQERENLELR--------------------FRLV--YCWLNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKTETSYIRKRQDPAGSRL
        PQD  LLQER+NLELR                     +LV     LNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVK++TSYIRKRQDP+GS L
Subjt:  PQDLYLLQERENLELR--------------------FRLV--YCWLNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKTETSYIRKRQDPAGSRL

Query:  IFHNEADRT--NPYQSIF
        IF+NE+DRT  NP+ SI+
Subjt:  IFHNEADRT--NPYQSIF

A0A0S2IHI7 DNA-directed RNA polymerase

1.2e-26

65.25

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Query:  PQDLYLLQERENLELR--------------------FRLV--YCWLNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKTETSYIRKRQDPAGSRL
        PQD  LLQER+NLELR                     +LV     LNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVK++TSYIRKRQDP+GS L
Subjt:  PQDLYLLQERENLELR--------------------FRLV--YCWLNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKTETSYIRKRQDPAGSRL

Query:  IFHNEADRT--NPYQSIF
        IF+NE+DRT  NP+ SI+
Subjt:  IFHNEADRT--NPYQSIF

A0A2H4T1Y3 DNA-directed RNA polymerase subunit beta''

1.2e-26

65.25

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Query:  PQDLYLLQERENLELR--------------------FRLV--YCWLNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKTETSYIRKRQDPAGSRL
        PQD  LLQER+NLELR                     +LV     LNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVK++TSYIRKRQDP+GS L
Subjt:  PQDLYLLQERENLELR--------------------FRLV--YCWLNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKTETSYIRKRQDPAGSRL

Query:  IFHNEADRT--NPYQSIF
        IF+NE+DRT  NP+ SI+
Subjt:  IFHNEADRT--NPYQSIF

A0A6H0EWD1 DNA-directed RNA polymerase subunit beta''

1.2e-26

65.25

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Query:  PQDLYLLQERENLELR--------------------FRLV--YCWLNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKTETSYIRKRQDPAGSRL
        PQD  LLQER+NLELR                     +LV     LNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVK++TSYIRKRQDP+GS L
Subjt:  PQDLYLLQERENLELR--------------------FRLV--YCWLNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKTETSYIRKRQDPAGSRL

Query:  IFHNEADRT--NPYQSIF
        IF+NE+DRT  NP+ SI+
Subjt:  IFHNEADRT--NPYQSIF

SwissProt top hits

e value

%identity

Alignment

B1NWE0 DNA-directed RNA polymerase subunit beta''

2.7e-20

52.94

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Query:  PQDLYLLQERENLELR--------------------FRLVYCW--LNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKTETSYI-RKRQDPAGSR
        PQD  LLQE++NL+LR                     +LV     LNWD+DKKSSSIEEARA+FVE+STNGL+R+FLRI+LVK   SYI RKR DP+GS 
Subjt:  PQDLYLLQERENLELR--------------------FRLVYCW--LNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKTETSYI-RKRQDPAGSR

Query:  LIFHNEADRT--NPYQSIF
         I +N +DRT  NP+  I+
Subjt:  LIFHNEADRT--NPYQSIF

B2XWN9 DNA-directed RNA polymerase subunit beta''

4.2e-21

51.72

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Query:  PQDLYLLQERENLELR--------------------FRLVYCW--LNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKTETSYIRKRQDPAGSRL
        PQD  LLQER+ ++LR                     +LV     LNWD DKKSSSIEE+RASFVEV TN ++R+FLRIDLVK+  SY  KR DP+GS L
Subjt:  PQDLYLLQERENLELR--------------------FRLVYCW--LNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKTETSYIRKRQDPAGSRL

Query:  IFHNEADRTNPYQSIF
        +  NE+DR NP+ SI+
Subjt:  IFHNEADRTNPYQSIF

Q4VZP3 DNA-directed RNA polymerase subunit beta''

2.3e-27

61.02

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Query:  PQDLYLLQERENLELRFR--LVY--------------------CWLNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKTETSYIRKRQDPAGSRL
        PQD  LLQER+NLELR    ++Y                      LNWDRDKKSSSIE+ARASFVEVSTNGLVRNFLRIDL K++T+YIRKR+DP+GS L
Subjt:  PQDLYLLQERENLELRFR--LVY--------------------CWLNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKTETSYIRKRQDPAGSRL

Query:  IFHNEADRT--NPYQSIF
        IF+NE+DRT  NP+ SI+
Subjt:  IFHNEADRT--NPYQSIF

Q8HVY3 DNA-directed RNA polymerase subunit beta''

1.6e-20

52.99

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Query:  PQDLYLLQERENLELR--------------------FRLVYCW--LNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKTETSYIRKRQDPAGSRL
        PQD++  QER+NLEL+                     +LV     LNWD+DKK SSIE A ASFVE+S  GLVR FLRIDLVK+  SYIRKR +P GSR 
Subjt:  PQDLYLLQERENLELR--------------------FRLVYCW--LNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKTETSYIRKRQDPAGSRL

Query:  IFHNEADRT--NPYQSI
        I  NE+DRT  NP+ SI
Subjt:  IFHNEADRT--NPYQSI

Q9BBS7 DNA-directed RNA polymerase subunit beta''

1.2e-20

42.42

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Query:  KKSKEILRKGKMRFMSSGSHLPRKSLLFLFDLRRYQFSN-------IPQDLYLLQERENLELR--------------------FRLVYCW--LNWDRDKK
        K SKE  +K   R++   +   +K  + +  +  Y  ++        PQDL+  +E +NLEL+                     +LV     LNW+ D+K
Subjt:  KKSKEILRKGKMRFMSSGSHLPRKSLLFLFDLRRYQFSN-------IPQDLYLLQERENLELR--------------------FRLVYCW--LNWDRDKK

Query:  SSSIEEARASFVEVSTNGLVRNFLRIDLVKTETSYIRKRQDPAGSRLIFHNEADR--TNPYQSIF
        SSSIEEA ASFVEVSTNGL+R FLRIDLVK+  SYIRKR DP+ S LI +NE+DR   NP+ SI+
Subjt:  SSSIEEARASFVEVSTNGLVRNFLRIDLVKTETSYIRKRQDPAGSRLIFHNEADR--TNPYQSIF

Arabidopsis top hits

e value

%identity

Alignment

ATCG00170.1 DNA-directed RNA polymerase family protein

1.5e-13

43.48

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Query:  PQDLYLLQERENLELR--------------------FRLVYCW--LNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKTETSYIRKRQDPAGSRL
        PQDL+  +E++N++LR                     +LV     LNWD   K+SS+EE RA FVEVST GL+++F+RI LVK+  SYIRKR +   S L
Subjt:  PQDLYLLQERENLELR--------------------FRLVYCW--LNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKTETSYIRKRQDPAGSRL

Query:  IFHNEADRTNPYQSI
        I    AD  NP+ SI
Subjt:  IFHNEADRTNPYQSI

Sequences

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CDS sequence

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ATGGCATCTTGCTACCACCTGAAAAAGTCAAAAGAAATTCTAAGAAAAGGAAAAATGAGATTTATGTCCAGTGGATCACACCTACCAAGAAAAAGTCTTTTGTTTTTGTT
CGACCTCCGACGGTATCAATTTAGTAACATCCCACAAGATCTATATTTATTGCAAGAAAGGGAGAATCTGGAGCTTAGATTCAGACTTGTTTATTGTTGGTTGAATTGGG
ACCGAGACAAAAAAAGCTCTTCTATCGAAGAAGCCCGCGCTTCCTTTGTTGAAGTAAGTACAAATGGTCTGGTTCGCAATTTCCTACGAATAGACTTAGTGAAAACCGAG
ACTTCGTATATCAGAAAAAGGCAAGATCCAGCAGGTTCACGATTGATCTTTCATAATGAGGCAGATCGCACCAACCCATATCAATCCATTTTTTGCTAG

mRNA sequence

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Protein sequence

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MASCYHLKKSKEILRKGKMRFMSSGSHLPRKSLLFLFDLRRYQFSNIPQDLYLLQERENLELRFRLVYCWLNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKTE
TSYIRKRQDPAGSRLIFHNEADRTNPYQSIFC

CmaCh08G006540 (gene) of Cucurbita maxima (Rimu) v1.1 genome