CuGenDBv2

Gene ID	CmaCh08G007710
Organism	Cucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description	Photosystem II CP47 reaction center protein
Genome location	Cma_Chr08:4654540..4655549
RNA-Seq Expression	CmaCh08G007710
Synteny	CmaCh08G007710
Gene Ontology terms	GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0009523 - photosystem II (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0016168 - chlorophyll binding (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
InterPro domains	IPR000932 - Photosystem antenna protein-like IPR036001 - Photosystem antenna protein-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

QYA18135.1 photosystem II CP47 chlorophyll apoprotein [Urtica angustifolia]

3.2e-22

92.98

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Query:  YGLIGRVQAVNPAWGVEGFDPFVPGGIASHYIAASTLDILAGLFHLSVRPPQRLYKG
        YGL GRVQAVNPAWGVEGFDPFVPGGIASH+IAA TL ILAGLFHLSVRPPQRLYKG
Subjt:  YGLIGRVQAVNPAWGVEGFDPFVPGGIASHYIAASTLDILAGLFHLSVRPPQRLYKG

YP_009631169.1 PsbB [Sanguisorba tenuifolia]

3.2e-22

92.98

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Query:  YGLIGRVQAVNPAWGVEGFDPFVPGGIASHYIAASTLDILAGLFHLSVRPPQRLYKG
        YGL GRVQAVNPAWGVEGFDPFVPGGIASH+IAA TL ILAGLFHLSVRPPQRLYKG
Subjt:  YGLIGRVQAVNPAWGVEGFDPFVPGGIASHYIAASTLDILAGLFHLSVRPPQRLYKG

YP_009757176.1 photosystem II CP47 chlorophyll apoprotein [Elatostema dissectum]

3.2e-22

92.98

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Query:  YGLIGRVQAVNPAWGVEGFDPFVPGGIASHYIAASTLDILAGLFHLSVRPPQRLYKG
        YGL GRVQAVNPAWGVEGFDPFVPGGIASH+IAA TL ILAGLFHLSVRPPQRLYKG
Subjt:  YGLIGRVQAVNPAWGVEGFDPFVPGGIASHYIAASTLDILAGLFHLSVRPPQRLYKG

YP_009865130.1 photosystem II CP47 chlorophyll apoprotein [Alchemilla argyrophylla]

3.2e-22

92.98

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Query:  YGLIGRVQAVNPAWGVEGFDPFVPGGIASHYIAASTLDILAGLFHLSVRPPQRLYKG
        YGL GRVQAVNPAWGVEGFDPFVPGGIASH+IAA TL ILAGLFHLSVRPPQRLYKG
Subjt:  YGLIGRVQAVNPAWGVEGFDPFVPGGIASHYIAASTLDILAGLFHLSVRPPQRLYKG

YP_010048012.1 photosystem II 47 kDa protein [Pilea cadierei]

3.2e-22

92.98

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Query:  YGLIGRVQAVNPAWGVEGFDPFVPGGIASHYIAASTLDILAGLFHLSVRPPQRLYKG
        YGL GRVQAVNPAWGVEGFDPFVPGGIASH+IAA TL ILAGLFHLSVRPPQRLYKG
Subjt:  YGLIGRVQAVNPAWGVEGFDPFVPGGIASHYIAASTLDILAGLFHLSVRPPQRLYKG

TrEMBL top hits

e value

%identity

Alignment

A0A1V0IZP4 Photosystem II CP47 reaction center protein

1.6e-22

92.98

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Query:  YGLIGRVQAVNPAWGVEGFDPFVPGGIASHYIAASTLDILAGLFHLSVRPPQRLYKG
        YGL GRVQAVNPAWGVEGFDPFVPGGIASH+IAA TL ILAGLFHLSVRPPQRLYKG
Subjt:  YGLIGRVQAVNPAWGVEGFDPFVPGGIASHYIAASTLDILAGLFHLSVRPPQRLYKG

A0A218KG68 Photosystem II CP47 reaction center protein

1.6e-22

92.98

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Query:  YGLIGRVQAVNPAWGVEGFDPFVPGGIASHYIAASTLDILAGLFHLSVRPPQRLYKG
        YGL GRVQAVNPAWGVEGFDPFVPGGIASH+IAA TL ILAGLFHLSVRPPQRLYKG
Subjt:  YGLIGRVQAVNPAWGVEGFDPFVPGGIASHYIAASTLDILAGLFHLSVRPPQRLYKG

A0A3P8MVS2 Photosystem II CP47 reaction center protein

1.6e-22

92.98

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Query:  YGLIGRVQAVNPAWGVEGFDPFVPGGIASHYIAASTLDILAGLFHLSVRPPQRLYKG
        YGL GRVQAVNPAWGVEGFDPFVPGGIASH+IAA TL ILAGLFHLSVRPPQRLYKG
Subjt:  YGLIGRVQAVNPAWGVEGFDPFVPGGIASHYIAASTLDILAGLFHLSVRPPQRLYKG

A0A6B9TSQ4 Photosystem II CP47 reaction center protein

1.6e-22

92.98

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Query:  YGLIGRVQAVNPAWGVEGFDPFVPGGIASHYIAASTLDILAGLFHLSVRPPQRLYKG
        YGL GRVQAVNPAWGVEGFDPFVPGGIASH+IAA TL ILAGLFHLSVRPPQRLYKG
Subjt:  YGLIGRVQAVNPAWGVEGFDPFVPGGIASHYIAASTLDILAGLFHLSVRPPQRLYKG

A0A6B9TU18 Photosystem II CP47 reaction center protein

1.6e-22

92.98

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Query:  YGLIGRVQAVNPAWGVEGFDPFVPGGIASHYIAASTLDILAGLFHLSVRPPQRLYKG
        YGL GRVQAVNPAWGVEGFDPFVPGGIASH+IAA TL ILAGLFHLSVRPPQRLYKG
Subjt:  YGLIGRVQAVNPAWGVEGFDPFVPGGIASHYIAASTLDILAGLFHLSVRPPQRLYKG

SwissProt top hits

e value

%identity

Alignment

A4GGD1 Photosystem II CP47 reaction center protein

1.6e-24

87.72

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Query:  YGLIGRVQAVNPAWGVEGFDPFVPGGIASHYIAASTLDILAGLFHLSVRPPQRLYKG
        YGL GR+Q+VNPAWGVEGFDPFVPGG+ASH+IAA TL ILAGLFHLSVRPPQRLYKG
Subjt:  YGLIGRVQAVNPAWGVEGFDPFVPGGIASHYIAASTLDILAGLFHLSVRPPQRLYKG

A6MM62 Photosystem II CP47 reaction center protein

2.1e-24

89.47

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Query:  YGLIGRVQAVNPAWGVEGFDPFVPGGIASHYIAASTLDILAGLFHLSVRPPQRLYKG
        YGL G+VQ+VNPAWGVEGFDPFVPGGIASH+IAA TL ILAGLFHLSVRPPQRLYKG
Subjt:  YGLIGRVQAVNPAWGVEGFDPFVPGGIASHYIAASTLDILAGLFHLSVRPPQRLYKG

Q09WZ1 Photosystem II CP47 reaction center protein

4.3e-25

92.98

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Query:  YGLIGRVQAVNPAWGVEGFDPFVPGGIASHYIAASTLDILAGLFHLSVRPPQRLYKG
        YGL GRVQAVNPAWGVEGFDPFVPGGIASH+IAA TL ILAGLFHLSVRPPQRLYKG
Subjt:  YGLIGRVQAVNPAWGVEGFDPFVPGGIASHYIAASTLDILAGLFHLSVRPPQRLYKG

Q2PMQ9 Photosystem II CP47 reaction center protein

1.6e-24

87.72

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Query:  YGLIGRVQAVNPAWGVEGFDPFVPGGIASHYIAASTLDILAGLFHLSVRPPQRLYKG
        YGL GR+Q+VNPAWGVEGFDPFVPGG+ASH+IAA TL ILAGLFHLSVRPPQRLYKG
Subjt:  YGLIGRVQAVNPAWGVEGFDPFVPGGIASHYIAASTLDILAGLFHLSVRPPQRLYKG

Q2QD63 Photosystem II CP47 reaction center protein

4.3e-25

92.98

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Query:  YGLIGRVQAVNPAWGVEGFDPFVPGGIASHYIAASTLDILAGLFHLSVRPPQRLYKG
        YGL GRVQAVNPAWGVEGFDPFVPGGIASH+IAA TL ILAGLFHLSVRPPQRLYKG
Subjt:  YGLIGRVQAVNPAWGVEGFDPFVPGGIASHYIAASTLDILAGLFHLSVRPPQRLYKG

Arabidopsis top hits

e value

%identity

Alignment

ATCG00680.1 photosystem II reaction center protein B

2.6e-25

89.47

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Query:  YGLIGRVQAVNPAWGVEGFDPFVPGGIASHYIAASTLDILAGLFHLSVRPPQRLYKG
        YGL G+VQ VNPAWGVEGFDPFVPGGIASH+IAA TL ILAGLFHLSVRPPQRLYKG
Subjt:  YGLIGRVQAVNPAWGVEGFDPFVPGGIASHYIAASTLDILAGLFHLSVRPPQRLYKG

Sequences

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CDS sequence

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ATGAATCTGTTGGAGCTTTGGATGGATGGGTGTGCTGGTGGATCGTTGGATGAGTTTGTACGCCTTGCATATGGATTAATCGGAAGGGTACAAGCTGTAAATCCTGCGTG
GGGTGTTGAAGGGTTTGATCCTTTTGTTCCGGGCGGAATAGCCTCTCATTATATTGCAGCAAGTACATTGGACATATTAGCGGGTCTATTCCATCTTAGTGTTCGTCCGC
CCCAACGTCTATACAAGGGGCCATCGTGTTTCCACCGTGTAGTAGAAGCAGCACTGCTGGTAATAAACTCCTAA

mRNA sequence

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CGCCATTGAATTGCAGAAAAGGAAAATGGAAGCTGCTTCTTCGAAATCAGAGTAGTGGATGATCTCTTAGATTGTGTGTGGATCGCAGATTTAAAGACGAAGAACAGATC
CCAAGAAAACACATGAATCTGTTGGAGCTTTGGATGGATGGGTGTGCTGGTGGATCGTTGGATGAGTTTGTACGCCTTGCATATGGATTAATCGGAAGGGTACAAGCTGT
AAATCCTGCGTGGGGTGTTGAAGGGTTTGATCCTTTTGTTCCGGGCGGAATAGCCTCTCATTATATTGCAGCAAGTACATTGGACATATTAGCGGGTCTATTCCATCTTA
GTGTTCGTCCGCCCCAACGTCTATACAAGGGGCCATCGTGTTTCCACCGTGTAGTAGAAGCAGCACTGCTGGTAATAAACTCCTAA

Protein sequence

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MNLLELWMDGCAGGSLDEFVRLAYGLIGRVQAVNPAWGVEGFDPFVPGGIASHYIAASTLDILAGLFHLSVRPPQRLYKGPSCFHRVVEAALLVINS

CmaCh08G007710 (gene) of Cucurbita maxima (Rimu) v1.1 genome