; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmaCh08G008400 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh08G008400
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionRNA-binding protein with multiple splicing
Genome locationCma_Chr08:5094236..5097243
RNA-Seq ExpressionCmaCh08G008400
SyntenyCmaCh08G008400
Gene Ontology termsGO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7025936.1 RNA-binding protein with multiple splicing 2, partial [Cucurbita argyrosperma subsp. argyrosperma]5.4e-16799.32Show/hide
Query:  MAGTGIHPYHHQWSAAAAPPPPPQATAIAPPPIPYPHPSHILVDNPARHASDEVRTIFLTGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFS
        MAGTGIHPYHHQWS AAAPPPPPQATAIAPPPIPYPHPSHILVDNPARHASDEVRTIFLTGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFS
Subjt:  MAGTGIHPYHHQWSAAAAPPPPPQATAIAPPPIPYPHPSHILVDNPARHASDEVRTIFLTGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFS

Query:  NAQLAIAAKDALQDMVFDAESKSVLHTEMAKKNLFVKRGIVADADAYDQSKRLRTGGEYAHTGYSSPSPFHAPPRPIWGPHGYMAPPPPPYDPYGSYPVH
        NAQLAIAAKDALQDMVFDAESKSVLHTEMAKKNLFVKRGIVADADAYDQSKRLRTGGEYAHTGYSSPSPFHAPP PIWGPHGYMAPPPPPYDPYGSYPVH
Subjt:  NAQLAIAAKDALQDMVFDAESKSVLHTEMAKKNLFVKRGIVADADAYDQSKRLRTGGEYAHTGYSSPSPFHAPPRPIWGPHGYMAPPPPPYDPYGSYPVH

Query:  PVPMPAPAPVPAPCSYVPVQNTKDNPPCNTLFIGNLGENVNEEELRGLFSVQPGFKQMKTLRQERHKVCFIEFEDVNTASNVHHLLQGAVIPSSGS
        PVPMPAPAPVPAPCSYVPVQNTKDNPPCNTLFIGNLGENVNEEELRGLFSVQPGFKQMKTLRQERHKVCFIEFEDVNTASNVHHLLQGAVIPSSGS
Subjt:  PVPMPAPAPVPAPCSYVPVQNTKDNPPCNTLFIGNLGENVNEEELRGLFSVQPGFKQMKTLRQERHKVCFIEFEDVNTASNVHHLLQGAVIPSSGS

XP_022964124.1 RNA-binding protein with multiple splicing 2-like [Cucurbita moschata]4.4e-17796.62Show/hide
Query:  MAGTGIHPYHHQWSAAAAPPPPPQATAIAPPPIPYPHPSHILVDNPARHASDEVRTIFLTGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFS
        MAGTGIHPYHHQWS AAAPPPPPQATAIAPPPIPYPHPSHILVDNPARHASDEVRTIFLTGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFS
Subjt:  MAGTGIHPYHHQWSAAAAPPPPPQATAIAPPPIPYPHPSHILVDNPARHASDEVRTIFLTGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFS

Query:  NAQLAIAAKDALQDMVFDAESKSVLHTEMAKKNLFVKRGIVADADAYDQSKRLRTGGEYAHTGYSSPSPFHAPPRPIWGPHGYMAPPPPPYDPYGSYPVH
        NAQLAIAAKDALQDMVFDAESKSVLHTEMAKKNLFVKRGIVADADAYDQSKRLRTGGEYAHTGYSSPSPFHAPP PIWGPHGYMAPPPPPYDPYGSYPVH
Subjt:  NAQLAIAAKDALQDMVFDAESKSVLHTEMAKKNLFVKRGIVADADAYDQSKRLRTGGEYAHTGYSSPSPFHAPPRPIWGPHGYMAPPPPPYDPYGSYPVH

Query:  PVPMPAPAPVPAPCSYVPVQNTKDNPPCNTLFIGNLGENVNEEELRGLFSVQPGFKQMKTLRQERHKVCFIEFEDVNTASNVHHLLQGAVIPSSGS----
        PVPMPAPAPVPAPCSYVPVQNTKDNPPCNTLFIGNLGENVNEEELRGLFSVQPGFKQMKTLRQERHKVCFIEFEDVNTASNVHHLLQGAVIPSSGS    
Subjt:  PVPMPAPAPVPAPCSYVPVQNTKDNPPCNTLFIGNLGENVNEEELRGLFSVQPGFKQMKTLRQERHKVCFIEFEDVNTASNVHHLLQGAVIPSSGS----

Query:  -----NPFGKRKDATYPVSAPGANG
             NPFGKRKDATYPVSAPGANG
Subjt:  -----NPFGKRKDATYPVSAPGANG

XP_022999922.1 RNA-binding protein with multiple splicing 2-like [Cucurbita maxima]1.8e-17897.23Show/hide
Query:  MAGTGIHPYHHQWSAAAAPPPPPQATAIAPPPIPYPHPSHILVDNPARHASDEVRTIFLTGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFS
        MAGTGIHPYHHQWSAAAAPPPPPQATAIAPPPIPYPHPSHILVDNPARHASDEVRTIFLTGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFS
Subjt:  MAGTGIHPYHHQWSAAAAPPPPPQATAIAPPPIPYPHPSHILVDNPARHASDEVRTIFLTGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFS

Query:  NAQLAIAAKDALQDMVFDAESKSVLHTEMAKKNLFVKRGIVADADAYDQSKRLRTGGEYAHTGYSSPSPFHAPPRPIWGPHGYMAPPPPPYDPYGSYPVH
        NAQLAIAAKDALQDMVFDAESKSVLHTEMAKKNLFVKRGIVADADAYDQSKRLRTGGEYAHTGYSSPSPFHAPPRPIWGPHGYMAPPPPPYDPYGSYPVH
Subjt:  NAQLAIAAKDALQDMVFDAESKSVLHTEMAKKNLFVKRGIVADADAYDQSKRLRTGGEYAHTGYSSPSPFHAPPRPIWGPHGYMAPPPPPYDPYGSYPVH

Query:  PVPMPAPAPVPAPCSYVPVQNTKDNPPCNTLFIGNLGENVNEEELRGLFSVQPGFKQMKTLRQERHKVCFIEFEDVNTASNVHHLLQGAVIPSSGS----
        PVPMPAPAPVPAPCSYVPVQNTKDNPPCNTLFIGNLGENVNEEELRGLFSVQPGFKQMKTLRQERHKVCFIEFEDVNTASNVHHLLQGAVIPSSGS    
Subjt:  PVPMPAPAPVPAPCSYVPVQNTKDNPPCNTLFIGNLGENVNEEELRGLFSVQPGFKQMKTLRQERHKVCFIEFEDVNTASNVHHLLQGAVIPSSGS----

Query:  -----NPFGKRKDATYPVSAPGANG
             NPFGKRKDATYPVSAPGANG
Subjt:  -----NPFGKRKDATYPVSAPGANG

XP_023515333.1 RNA-binding protein with multiple splicing 2-like [Cucurbita pepo subsp. pepo]5.7e-17796.31Show/hide
Query:  MAGTGIHPYHHQWSAAAAPPPPPQATAIAPPPIPYPHPSHILVDNPARHASDEVRTIFLTGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFS
        MAGTGIHPYHHQWS AAAPPPPPQATAIAPPPIPYPHPSHILVDNPARHASDEVRT+FLTGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFS
Subjt:  MAGTGIHPYHHQWSAAAAPPPPPQATAIAPPPIPYPHPSHILVDNPARHASDEVRTIFLTGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFS

Query:  NAQLAIAAKDALQDMVFDAESKSVLHTEMAKKNLFVKRGIVADADAYDQSKRLRTGGEYAHTGYSSPSPFHAPPRPIWGPHGYMAPPPPPYDPYGSYPVH
        NAQLAIAAKDALQDMVFDAESKSVLHTEMAKKNLFVKRGIVADADAYDQSKRLRTGGEYAHTGYSSPSPFHAPP PIWGPHGYMAPPPPPYDPYGSYPVH
Subjt:  NAQLAIAAKDALQDMVFDAESKSVLHTEMAKKNLFVKRGIVADADAYDQSKRLRTGGEYAHTGYSSPSPFHAPPRPIWGPHGYMAPPPPPYDPYGSYPVH

Query:  PVPMPAPAPVPAPCSYVPVQNTKDNPPCNTLFIGNLGENVNEEELRGLFSVQPGFKQMKTLRQERHKVCFIEFEDVNTASNVHHLLQGAVIPSSGS----
        PVPMPAPAPVPAPCSYVPVQNTKDNPPCNTLFIGNLGENVNEEELRGLFSVQPGFKQMKTLRQERHKVCFIEFEDVNTASNVHHLLQGAVIPSSGS    
Subjt:  PVPMPAPAPVPAPCSYVPVQNTKDNPPCNTLFIGNLGENVNEEELRGLFSVQPGFKQMKTLRQERHKVCFIEFEDVNTASNVHHLLQGAVIPSSGS----

Query:  -----NPFGKRKDATYPVSAPGANG
             NPFGKRKDATYPVSAPGANG
Subjt:  -----NPFGKRKDATYPVSAPGANG

XP_038898734.1 RNA-binding protein with multiple splicing 2 [Benincasa hispida]1.4e-16290.52Show/hide
Query:  MAGTGIHPYHHQWSAAAA--PPPPPQATAIAPPPIPYPHPSHILVDNPARHASDEVRTIFLTGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFAL
        MAGTGIHPYH QW AAAA  PPPPPQA A APPPIP+PHP  ILVDNP RHASDEVRTIF+TGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFAL
Subjt:  MAGTGIHPYHHQWSAAAA--PPPPPQATAIAPPPIPYPHPSHILVDNPARHASDEVRTIFLTGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFAL

Query:  FSNAQLAIAAKDALQDMVFDAESKSVLHTEMAKKNLFVKRGIVADADAYDQSKRLRTGGEYAHTGYSSPSPFHAPPRPIWGPHGYMAPPPPPYDPYGSYP
        FSNAQ AIAAKDALQDMVFDAESKSVLHTEMAKKNLFVKRGIVADA AYDQSKRLRTGG+YAHTGYSSPSPFHAPP PIWGPHGYMAPPPPPYDPYG YP
Subjt:  FSNAQLAIAAKDALQDMVFDAESKSVLHTEMAKKNLFVKRGIVADADAYDQSKRLRTGGEYAHTGYSSPSPFHAPPRPIWGPHGYMAPPPPPYDPYGSYP

Query:  VHPVPMPAPAPVPAPCSYVPVQNTKDNPPCNTLFIGNLGENVNEEELRGLFSVQPGFKQMKTLRQERHKVCFIEFEDVNTASNVHHLLQGAVIPSSGS--
        V PVPMPAPAPVPAP SYVPVQNTKDNPPCNTLFIGNLGENVNEEELRGLFSVQPGFKQMK LRQERH VCFIEFEDVNTA+NVHH LQGAVIPSSGS  
Subjt:  VHPVPMPAPAPVPAPCSYVPVQNTKDNPPCNTLFIGNLGENVNEEELRGLFSVQPGFKQMKTLRQERHKVCFIEFEDVNTASNVHHLLQGAVIPSSGS--

Query:  -------NPFGKRKDATYPVSAPGANG
               NPFGKRKDATYPVSAPGANG
Subjt:  -------NPFGKRKDATYPVSAPGANG

TrEMBL top hitse value%identityAlignment
A0A0A0K6S7 RRM domain-containing protein3.3e-16289.3Show/hide
Query:  MAGTGIHPYHHQWSAAAA--PPPPPQATAIAPPPIPYPHPSHILVDNPARHASDEVRTIFLTGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFAL
        MAGTGIHPYH QW AAAA  PPPPPQA A APPPIP+PHP  ILVDNP RHASDEVRTIF+TGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFAL
Subjt:  MAGTGIHPYHHQWSAAAA--PPPPPQATAIAPPPIPYPHPSHILVDNPARHASDEVRTIFLTGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFAL

Query:  FSNAQLAIAAKDALQDMVFDAESKSVLHTEMAKKNLFVKRGIVADADAYDQSKRLRTGGEYAHTGYSSPSPFHAPPRPIWGPHGYMAPPPPPYDPYGSYP
        FSNAQ AIAAKDALQDMVFDAESKSVLHTEMAKKNLFVKRGIVADA  YDQSKRLRTGG+YAHTGYSSPSPFHAPP PIWGPHGYMAPPPPPYDPYG YP
Subjt:  FSNAQLAIAAKDALQDMVFDAESKSVLHTEMAKKNLFVKRGIVADADAYDQSKRLRTGGEYAHTGYSSPSPFHAPPRPIWGPHGYMAPPPPPYDPYGSYP

Query:  VHPVPMPAPAPVPAPCSYVPVQNTKDNPPCNTLFIGNLGENVNEEELRGLFSVQPGFKQMKTLRQERHKVCFIEFEDVNTASNVHHLLQGAVIPSSGS--
        V PVPMPAPAPVPAP SYVPVQNTKDNPPCNTLFIGNLGENVNEEELRGLFSVQPGFKQMK LRQERH VCFIEFEDVN A+NVHH LQGAVIPSSGS  
Subjt:  VHPVPMPAPAPVPAPCSYVPVQNTKDNPPCNTLFIGNLGENVNEEELRGLFSVQPGFKQMKTLRQERHKVCFIEFEDVNTASNVHHLLQGAVIPSSGS--

Query:  -------NPFGKRKDATYPVSAPGANG
               NPFGKRKDA YPVSAPG NG
Subjt:  -------NPFGKRKDATYPVSAPGANG

A0A1S3CH02 RNA-binding protein with multiple splicing1.1e-16289.6Show/hide
Query:  MAGTGIHPYHHQWSAAAA--PPPPPQATAIAPPPIPYPHPSHILVDNPARHASDEVRTIFLTGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFAL
        MAGTGIHPYH QW AAAA  PPPPPQA A APPPIP+PHP  ILVDNP RHASDEVRTIF+TGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFAL
Subjt:  MAGTGIHPYHHQWSAAAA--PPPPPQATAIAPPPIPYPHPSHILVDNPARHASDEVRTIFLTGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFAL

Query:  FSNAQLAIAAKDALQDMVFDAESKSVLHTEMAKKNLFVKRGIVADADAYDQSKRLRTGGEYAHTGYSSPSPFHAPPRPIWGPHGYMAPPPPPYDPYGSYP
        FSNAQ AIAAKDALQDMVFDAESKSVLHTEMAKKNLFVKRGIVADA AYDQSKRLRTGG+YAHTGYSSPSPFHAPP PIWGPHGYMAPPPPPYDPYG YP
Subjt:  FSNAQLAIAAKDALQDMVFDAESKSVLHTEMAKKNLFVKRGIVADADAYDQSKRLRTGGEYAHTGYSSPSPFHAPPRPIWGPHGYMAPPPPPYDPYGSYP

Query:  VHPVPMPAPAPVPAPCSYVPVQNTKDNPPCNTLFIGNLGENVNEEELRGLFSVQPGFKQMKTLRQERHKVCFIEFEDVNTASNVHHLLQGAVIPSSGS--
        V PVPMPAPAPVPAP SYVPVQNTKDNPPCNTLFIGNLGENVNEEELRGLFSVQPGFKQMK LRQERH VCFIEFEDVN A+NVHH LQGAVIPSSGS  
Subjt:  VHPVPMPAPAPVPAPCSYVPVQNTKDNPPCNTLFIGNLGENVNEEELRGLFSVQPGFKQMKTLRQERHKVCFIEFEDVNTASNVHHLLQGAVIPSSGS--

Query:  -------NPFGKRKDATYPVSAPGANG
               NPFGKRKDA YPVSAPG NG
Subjt:  -------NPFGKRKDATYPVSAPGANG

A0A5A7V0M8 RNA-binding protein with multiple splicing3.3e-16288.52Show/hide
Query:  MAGTGIHPYHHQWSAAAA--PPPPPQATAIAPPPIPYPHPSHILVDNPARHASDEVRTIFLTGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFAL
        MAGTGIHPYH QW AAAA  PPPPPQA A APPPIP+PHP  ILVDNP RHASDEVRTIF+TGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFAL
Subjt:  MAGTGIHPYHHQWSAAAA--PPPPPQATAIAPPPIPYPHPSHILVDNPARHASDEVRTIFLTGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFAL

Query:  FSNAQLAIAAKDALQDMVFDAESKSVLHTEMAKKNLFVKRGIVADADAYDQSKRLRTGGEYAHTGYSSPSPFHAPPRPIWGPHGYMAPPPPPYDPYGSYP
        FSNAQ AIAAKDALQDMVFDAESKSVLHTEMAKKNLFVKRGIVADA AYDQSKRLRTGG+YAHTGYSSPSPFHAPP PIWGPHGYMAPPPPPYDPYG YP
Subjt:  FSNAQLAIAAKDALQDMVFDAESKSVLHTEMAKKNLFVKRGIVADADAYDQSKRLRTGGEYAHTGYSSPSPFHAPPRPIWGPHGYMAPPPPPYDPYGSYP

Query:  VHPVPMPAPAPVPAPCSYVPVQNTKDNPPCNTLFIGNLGENVNEEELRGLFSVQPGFKQMKTLRQERHKVCFIEFEDVNTASNVHHLLQGAVIPSSGS--
        V PVPMPAPAPVPAP SYVPVQNTKDNPPCNTLFIGNLGENVNEEELRGLFSVQPGFKQMK LRQERH VCFIEFEDVN A+NVHH LQGAVIPSSGS  
Subjt:  VHPVPMPAPAPVPAPCSYVPVQNTKDNPPCNTLFIGNLGENVNEEELRGLFSVQPGFKQMKTLRQERHKVCFIEFEDVNTASNVHHLLQGAVIPSSGS--

Query:  -----------NPFGKRKDATYPVSAPGANG
                   NPFGKRKDA YPVSAPG NG
Subjt:  -----------NPFGKRKDATYPVSAPGANG

A0A6J1HM77 RNA-binding protein with multiple splicing 2-like2.1e-17796.62Show/hide
Query:  MAGTGIHPYHHQWSAAAAPPPPPQATAIAPPPIPYPHPSHILVDNPARHASDEVRTIFLTGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFS
        MAGTGIHPYHHQWS AAAPPPPPQATAIAPPPIPYPHPSHILVDNPARHASDEVRTIFLTGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFS
Subjt:  MAGTGIHPYHHQWSAAAAPPPPPQATAIAPPPIPYPHPSHILVDNPARHASDEVRTIFLTGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFS

Query:  NAQLAIAAKDALQDMVFDAESKSVLHTEMAKKNLFVKRGIVADADAYDQSKRLRTGGEYAHTGYSSPSPFHAPPRPIWGPHGYMAPPPPPYDPYGSYPVH
        NAQLAIAAKDALQDMVFDAESKSVLHTEMAKKNLFVKRGIVADADAYDQSKRLRTGGEYAHTGYSSPSPFHAPP PIWGPHGYMAPPPPPYDPYGSYPVH
Subjt:  NAQLAIAAKDALQDMVFDAESKSVLHTEMAKKNLFVKRGIVADADAYDQSKRLRTGGEYAHTGYSSPSPFHAPPRPIWGPHGYMAPPPPPYDPYGSYPVH

Query:  PVPMPAPAPVPAPCSYVPVQNTKDNPPCNTLFIGNLGENVNEEELRGLFSVQPGFKQMKTLRQERHKVCFIEFEDVNTASNVHHLLQGAVIPSSGS----
        PVPMPAPAPVPAPCSYVPVQNTKDNPPCNTLFIGNLGENVNEEELRGLFSVQPGFKQMKTLRQERHKVCFIEFEDVNTASNVHHLLQGAVIPSSGS    
Subjt:  PVPMPAPAPVPAPCSYVPVQNTKDNPPCNTLFIGNLGENVNEEELRGLFSVQPGFKQMKTLRQERHKVCFIEFEDVNTASNVHHLLQGAVIPSSGS----

Query:  -----NPFGKRKDATYPVSAPGANG
             NPFGKRKDATYPVSAPGANG
Subjt:  -----NPFGKRKDATYPVSAPGANG

A0A6J1KC37 RNA-binding protein with multiple splicing 2-like8.6e-17997.23Show/hide
Query:  MAGTGIHPYHHQWSAAAAPPPPPQATAIAPPPIPYPHPSHILVDNPARHASDEVRTIFLTGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFS
        MAGTGIHPYHHQWSAAAAPPPPPQATAIAPPPIPYPHPSHILVDNPARHASDEVRTIFLTGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFS
Subjt:  MAGTGIHPYHHQWSAAAAPPPPPQATAIAPPPIPYPHPSHILVDNPARHASDEVRTIFLTGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFS

Query:  NAQLAIAAKDALQDMVFDAESKSVLHTEMAKKNLFVKRGIVADADAYDQSKRLRTGGEYAHTGYSSPSPFHAPPRPIWGPHGYMAPPPPPYDPYGSYPVH
        NAQLAIAAKDALQDMVFDAESKSVLHTEMAKKNLFVKRGIVADADAYDQSKRLRTGGEYAHTGYSSPSPFHAPPRPIWGPHGYMAPPPPPYDPYGSYPVH
Subjt:  NAQLAIAAKDALQDMVFDAESKSVLHTEMAKKNLFVKRGIVADADAYDQSKRLRTGGEYAHTGYSSPSPFHAPPRPIWGPHGYMAPPPPPYDPYGSYPVH

Query:  PVPMPAPAPVPAPCSYVPVQNTKDNPPCNTLFIGNLGENVNEEELRGLFSVQPGFKQMKTLRQERHKVCFIEFEDVNTASNVHHLLQGAVIPSSGS----
        PVPMPAPAPVPAPCSYVPVQNTKDNPPCNTLFIGNLGENVNEEELRGLFSVQPGFKQMKTLRQERHKVCFIEFEDVNTASNVHHLLQGAVIPSSGS    
Subjt:  PVPMPAPAPVPAPCSYVPVQNTKDNPPCNTLFIGNLGENVNEEELRGLFSVQPGFKQMKTLRQERHKVCFIEFEDVNTASNVHHLLQGAVIPSSGS----

Query:  -----NPFGKRKDATYPVSAPGANG
             NPFGKRKDATYPVSAPGANG
Subjt:  -----NPFGKRKDATYPVSAPGANG

SwissProt top hitse value%identityAlignment
Q6DH13 RNA-binding protein, mRNA-processing factor 2a1.8e-0830.81Show/hide
Query:  NPARHASDEVRTIFLTGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQLAIAAKDALQDMVFDAESKSVLHTEMAKKNL-FVKRGIVAD
        N +    +EVRT+F++GLP D+K REL  L R   GYE S +    ++P+GF  F +   A AAK+AL  + FD ES   L  E AK N    K  ++A 
Subjt:  NPARHASDEVRTIFLTGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQLAIAAKDALQDMVFDAESKSVLHTEMAKKNL-FVKRGIVAD

Query:  ADAYDQSKRLRTGGEY-AHTGYSSPSPFHAPPRP-IWGPHGYMAPPPPPYDPYGSYPVHPVPMPAPAPVPAPCSYVPVQNTKDNP
         +  +    L  G  + A   Y        P  P  W P+        P  P+ ++  +P    A A + A   + P  +    P
Subjt:  ADAYDQSKRLRTGGEY-AHTGYSSPSPFHAPPRP-IWGPHGYMAPPPPPYDPYGSYPVHPVPMPAPAPVPAPCSYVPVQNTKDNP

Q8VC52 RNA-binding protein with multiple splicing 27.9e-1245.12Show/hide
Query:  DEVRTIFLTGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQLAIAAKDALQDMVFDAESKSVLHTEMAKKN
        +EVRT+F++GLP D+K REL  L R   GYE S +     +P+GF +F +   A AAK+AL  + FD E+   L  E AK N
Subjt:  DEVRTIFLTGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQLAIAAKDALQDMVFDAESKSVLHTEMAKKN

Q93062 RNA-binding protein with multiple splicing3.1e-0832.32Show/hide
Query:  DEVRTIFLTGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQLAIAAKDALQDMVFDAESKSVLHTEMAKKNL-FVKRGIVADADAYDQS
        +EVRT+F++GLP D+K REL  L R   GYE S +    ++P+GF  F +   A AAK+AL  + FD E    L  E AK N    K  +V   +     
Subjt:  DEVRTIFLTGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQLAIAAKDALQDMVFDAESKSVLHTEMAKKNL-FVKRGIVADADAYDQS

Query:  KRLRTGGEYAHTGYSSPSPFHAPPRPIWGPHGYMAPPPPPYDP--YGSYPVHPVPMPAPAPVPA
                      S+P P   P      P+    P   P  P  +  YP++P  +    P PA
Subjt:  KRLRTGGEYAHTGYSSPSPFHAPPRPIWGPHGYMAPPPPPYDP--YGSYPVHPVPMPAPAPVPA

Q9W6I1 RNA-binding protein with multiple splicing 26.9e-0831.07Show/hide
Query:  NPARHASDEVRTIFLTGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQLAIAAKDALQDMVFDAESKSVLHTEMAKKNL-FVKRGIVAD
        N   +  +EVRT+F++GLP D+K REL  L R   GYE S +    ++P+GF  F +   A AAK+AL  + FD E+   L  E AK N    K  ++A 
Subjt:  NPARHASDEVRTIFLTGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQLAIAAKDALQDMVFDAESKSVLHTEMAKKNL-FVKRGIVAD

Query:  ADAYDQSKRLRTGGEY-AHTGYSSPSPFHAPPRP-IWGPHGYMAPPPPPYDPYGSYPVHPVPMPAPAPVPAPCSYVP
         +  +    L  G  + A   Y        P  P  W P+        P  P+ ++  +P    A A + A   + P
Subjt:  ADAYDQSKRLRTGGEY-AHTGYSSPSPFHAPPRP-IWGPHGYMAPPPPPYDPYGSYPVHPVPMPAPAPVPAPCSYVP

Q9WVB0 RNA-binding protein with multiple splicing1.1e-0832.14Show/hide
Query:  DEVRTIFLTGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQLAIAAKDALQDMVFDAESKSVLHTEMAKKNL-FVKRGIVADADAYDQS
        +EVRT+F++GLP D+K REL  L R   GYE S +    ++P+GF  F +   A AAK+AL  + FD E    L  E AK N    K  +V   +     
Subjt:  DEVRTIFLTGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQLAIAAKDALQDMVFDAESKSVLHTEMAKKNL-FVKRGIVADADAYDQS

Query:  KRLRTGGEYAHTGYSSPSPFHAPPRPIWGPHGYMAPPPPPYDP--YGSYPVHPVPMPAPAPVPAPCSY
                      S+P P   P      P+    P   P  P  +  YP++P  +    P PA  +Y
Subjt:  KRLRTGGEYAHTGYSSPSPFHAPPRPIWGPHGYMAPPPPPYDP--YGSYPVHPVPMPAPAPVPAPCSY

Arabidopsis top hitse value%identityAlignment
AT2G42240.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.1e-3137.46Show/hide
Query:  YHHQWSAAAAPPPPPQATAIAPPPIPYPH----PSHILVDNPARHASDEVRTIFLTGLPEDVKERELQNLLRWLPGYEASQV-NFKGEKPMGFALFSNAQ
        Y H    A  PPPPP    ++P PI   H    P+H+ +      A DEVRT+F+ GLPEDVK RE+ NL R  PGYE S + +  G KP  FA+FS+ Q
Subjt:  YHHQWSAAAAPPPPPQATAIAPPPIPYPH----PSHILVDNPARHASDEVRTIFLTGLPEDVKERELQNLLRWLPGYEASQV-NFKGEKPMGFALFSNAQ

Query:  LAIAAKDALQDMVFDAESKSVLHTEMAKKNLFVKRGIVADADAYDQSKRLRTGGEYAHTGYSSPSPFHAPPRPIWGPHGYMAPPPPPYDPYGSYPVHPVP
         A+A   AL  MVFD E  S LH ++AK N   KR      D ++  K+L++      +G+ S   F  P                 Y+  G  P     
Subjt:  LAIAAKDALQDMVFDAESKSVLHTEMAKKNLFVKRGIVADADAYDQSKRLRTGGEYAHTGYSSPSPFHAPPRPIWGPHGYMAPPPPPYDPYGSYPVHPVP

Query:  MPAPAPVPAPCSYVPVQNTKDNPPCNTLFIGNLGENVNEEELRGLFSVQPGFKQMKTLRQERHKVCFIEFEDVNTASNVHHLLQGAVIPSS
        + A     AP S  P   +K   PC TLFI N+G N  E EL  +FS   GF ++K        V F++F+DV+ +S   H LQG V+ SS
Subjt:  MPAPAPVPAPCSYVPVQNTKDNPPCNTLFIGNLGENVNEEELRGLFSVQPGFKQMKTLRQERHKVCFIEFEDVNTASNVHHLLQGAVIPSS

AT2G42240.2 RNA-binding (RRM/RBD/RNP motifs) family protein2.1e-3137.46Show/hide
Query:  YHHQWSAAAAPPPPPQATAIAPPPIPYPH----PSHILVDNPARHASDEVRTIFLTGLPEDVKERELQNLLRWLPGYEASQV-NFKGEKPMGFALFSNAQ
        Y H    A  PPPPP    ++P PI   H    P+H+ +      A DEVRT+F+ GLPEDVK RE+ NL R  PGYE S + +  G KP  FA+FS+ Q
Subjt:  YHHQWSAAAAPPPPPQATAIAPPPIPYPH----PSHILVDNPARHASDEVRTIFLTGLPEDVKERELQNLLRWLPGYEASQV-NFKGEKPMGFALFSNAQ

Query:  LAIAAKDALQDMVFDAESKSVLHTEMAKKNLFVKRGIVADADAYDQSKRLRTGGEYAHTGYSSPSPFHAPPRPIWGPHGYMAPPPPPYDPYGSYPVHPVP
         A+A   AL  MVFD E  S LH ++AK N   KR      D ++  K+L++      +G+ S   F  P                 Y+  G  P     
Subjt:  LAIAAKDALQDMVFDAESKSVLHTEMAKKNLFVKRGIVADADAYDQSKRLRTGGEYAHTGYSSPSPFHAPPRPIWGPHGYMAPPPPPYDPYGSYPVHPVP

Query:  MPAPAPVPAPCSYVPVQNTKDNPPCNTLFIGNLGENVNEEELRGLFSVQPGFKQMKTLRQERHKVCFIEFEDVNTASNVHHLLQGAVIPSS
        + A     AP S  P   +K   PC TLFI N+G N  E EL  +FS   GF ++K        V F++F+DV+ +S   H LQG V+ SS
Subjt:  MPAPAPVPAPCSYVPVQNTKDNPPCNTLFIGNLGENVNEEELRGLFSVQPGFKQMKTLRQERHKVCFIEFEDVNTASNVHHLLQGAVIPSS

AT2G42240.3 RNA-binding (RRM/RBD/RNP motifs) family protein2.1e-3137.46Show/hide
Query:  YHHQWSAAAAPPPPPQATAIAPPPIPYPH----PSHILVDNPARHASDEVRTIFLTGLPEDVKERELQNLLRWLPGYEASQV-NFKGEKPMGFALFSNAQ
        Y H    A  PPPPP    ++P PI   H    P+H+ +      A DEVRT+F+ GLPEDVK RE+ NL R  PGYE S + +  G KP  FA+FS+ Q
Subjt:  YHHQWSAAAAPPPPPQATAIAPPPIPYPH----PSHILVDNPARHASDEVRTIFLTGLPEDVKERELQNLLRWLPGYEASQV-NFKGEKPMGFALFSNAQ

Query:  LAIAAKDALQDMVFDAESKSVLHTEMAKKNLFVKRGIVADADAYDQSKRLRTGGEYAHTGYSSPSPFHAPPRPIWGPHGYMAPPPPPYDPYGSYPVHPVP
         A+A   AL  MVFD E  S LH ++AK N   KR      D ++  K+L++      +G+ S   F  P                 Y+  G  P     
Subjt:  LAIAAKDALQDMVFDAESKSVLHTEMAKKNLFVKRGIVADADAYDQSKRLRTGGEYAHTGYSSPSPFHAPPRPIWGPHGYMAPPPPPYDPYGSYPVHPVP

Query:  MPAPAPVPAPCSYVPVQNTKDNPPCNTLFIGNLGENVNEEELRGLFSVQPGFKQMKTLRQERHKVCFIEFEDVNTASNVHHLLQGAVIPSS
        + A     AP S  P   +K   PC TLFI N+G N  E EL  +FS   GF ++K        V F++F+DV+ +S   H LQG V+ SS
Subjt:  MPAPAPVPAPCSYVPVQNTKDNPPCNTLFIGNLGENVNEEELRGLFSVQPGFKQMKTLRQERHKVCFIEFEDVNTASNVHHLLQGAVIPSS

AT3G13700.2 RNA-binding (RRM/RBD/RNP motifs) family protein8.4e-1728.78Show/hide
Query:  YPHPSH------ILVDNPARHASDEVRTIFLTGLPEDVKERELQNLLRWLPGYEASQVNF--KGEKPMGFALFSNAQLAIAAKDALQDMVFDAESKSVLH
        + HP H      +L D P       + T+F++GLP DVK RE+ NL R   G+E+ Q+ +  +G++ + FA F++ + A+AA + L  + FD ++ S LH
Subjt:  YPHPSH------ILVDNPARHASDEVRTIFLTGLPEDVKERELQNLLRWLPGYEASQVNF--KGEKPMGFALFSNAQLAIAAKDALQDMVFDAESKSVLH

Query:  TEMAKKNLFVKRG------IVADADAYDQSKRLRTGGEYAHTGYSSPSPFHAPPRPIWGPHGYMAPPPPPYDPYGSYPVHPVPMPAPAPVPAPCSYVPVQ
         E+A+ N   K        +V D    + SK   +  + +  G S P     P           +  P   D   S         +     AP +   ++
Subjt:  TEMAKKNLFVKRG------IVADADAYDQSKRLRTGGEYAHTGYSSPSPFHAPPRPIWGPHGYMAPPPPPYDPYGSYPVHPVPMPAPAPVPAPCSYVPVQ

Query:  NTKDN----PPCNTLFIGNLGENVNEEELRGLFSVQPGFKQMKTLRQERHKVCFIEFEDVNTASNVHHLLQGAVIPSS
           +       C+TLFI NLG N  E+EL+ L S  PGF  +K   +    V F +FE++  A++  + LQG ++ SS
Subjt:  NTKDN----PPCNTLFIGNLGENVNEEELRGLFSVQPGFKQMKTLRQERHKVCFIEFEDVNTASNVHHLLQGAVIPSS

AT3G21215.1 RNA-binding (RRM/RBD/RNP motifs) family protein3.1e-12871.86Show/hide
Query:  MAGTGIHPYHHQWSAAAAPPPPPQATAIAPPPIP----YPHPSHILVDNPARHASDEVRTIFLTGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGF
        MAG GIHPYH QW  A APPPP   ++ APP  P    +P P  +LVDN  R   DE+RTIF+ GLP+DVKEREL NLLRWLPGYEASQVNFKGEKPMGF
Subjt:  MAGTGIHPYHHQWSAAAAPPPPPQATAIAPPPIP----YPHPSHILVDNPARHASDEVRTIFLTGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGF

Query:  ALFSNAQLAIAAKDALQDMVFDAESKSVLHTEMAKKNLFVKRGIVADADAYDQSKRLRTGGEYAHTGYSSPSPFHAPPRPIWG-PHGYMAPPPPPYDPYG
        ALFS AQ A+AAKD LQ MVFDAESKSV+HTEMAKKNLFVKRGIV D++AYDQSKRLRTGG+  H+ Y SPSPFH PP P+WG PHGYMAP PPPYDPY 
Subjt:  ALFSNAQLAIAAKDALQDMVFDAESKSVLHTEMAKKNLFVKRGIVADADAYDQSKRLRTGGEYAHTGYSSPSPFHAPPRPIWG-PHGYMAPPPPPYDPYG

Query:  SYPVHPVPMPAPAPVPAPCSYVPVQNTKDNPPCNTLFIGNLGENVNEEELRGLFSVQPGFKQMKTLRQERHKVCFIEFEDVNTASNVHHLLQGAVIPSSG
         Y   PVPMP P P+ AP SYVPVQN KDNPPCNTLFIGNLGEN+NEEELR L S QPGFKQMK LRQERH VCFIEFEDVN+A+NVHH LQGAVIPSSG
Subjt:  SYPVHPVPMPAPAPVPAPCSYVPVQNTKDNPPCNTLFIGNLGENVNEEELRGLFSVQPGFKQMKTLRQERHKVCFIEFEDVNTASNVHHLLQGAVIPSSG

Query:  S---------NPFGKRKD----ATYPVSAPGANG
        S         NP+GKRK+    + +P  +P ANG
Subjt:  S---------NPFGKRKD----ATYPVSAPGANG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGGTACTGGAATCCACCCGTACCACCACCAATGGTCTGCGGCGGCTGCCCCTCCGCCTCCGCCACAAGCCACTGCCATCGCTCCTCCTCCTATTCCCTAT
CCCCATCCTTCTCACATCCTCGTCGACAACCCTGCCCGTCATGCCTCCGATGAGGTTCGAACTATATTTCTAACAGGTCTTCCGGAAGATGTGAAAGAGAGAGAG
CTACAGAATCTTCTCAGATGGTTACCTGGTTACGAGGCTTCGCAAGTAAATTTTAAAGGTGAAAAGCCTATGGGCTTTGCTCTCTTCTCCAACGCTCAGCTTGCT
ATTGCTGCGAAAGACGCCCTTCAGGATATGGTTTTTGATGCGGAGTCTAAGTCAGTGTTGCACACGGAGATGGCCAAGAAAAATCTTTTTGTTAAACGAGGCATT
GTTGCTGATGCAGATGCTTATGACCAAAGTAAACGTTTGAGAACTGGTGGTGAATATGCCCACACCGGGTATTCGAGCCCATCACCATTTCATGCACCTCCACGT
CCTATTTGGGGACCTCACGGGTATATGGCTCCACCTCCTCCTCCATATGATCCATATGGAAGTTACCCTGTTCATCCTGTACCTATGCCTGCTCCTGCACCTGTA
CCAGCACCTTGCAGCTATGTGCCTGTTCAGAACACAAAAGATAATCCTCCTTGCAATACACTGTTCATTGGCAATCTGGGGGAAAATGTAAATGAAGAGGAGCTC
AGAGGTCTTTTTAGCGTACAACCGGGATTTAAGCAAATGAAGACTCTGAGGCAGGAAAGGCATAAAGTCTGTTTCATTGAATTTGAAGATGTGAACACTGCCTCC
AATGTGCATCATCTTTTGCAGGGTGCTGTTATTCCTAGTTCTGGCTCTAACCCGTTTGGTAAACGGAAAGATGCTACCTATCCTGTTTCTGCTCCTGGGGCCAAT
GGA
mRNA sequenceShow/hide mRNA sequence
AGGTTGTCATTAGGTTTTTTTTTGCGGGAAGCTTCCAAATCCGTGTCAGAGCAGAGAAGGCCAACAAATTCAGCAAATTTGTGAAGACCAATAAGTTGGAGGAGA
ATTTTGATAGCTGCTTGCTCACTATCCTTTACTCTGGTTGATTGCGCATGGCCGGTACTGGAATCCACCCGTACCACCACCAATGGTCTGCGGCGGCTGCCCCTC
CGCCTCCGCCACAAGCCACTGCCATCGCTCCTCCTCCTATTCCCTATCCCCATCCTTCTCACATCCTCGTCGACAACCCTGCCCGTCATGCCTCCGATGAGGTTC
GAACTATATTTCTAACAGGTCTTCCGGAAGATGTGAAAGAGAGAGAGCTACAGAATCTTCTCAGATGGTTACCTGGTTACGAGGCTTCGCAAGTAAATTTTAAAG
GTGAAAAGCCTATGGGCTTTGCTCTCTTCTCCAACGCTCAGCTTGCTATTGCTGCGAAAGACGCCCTTCAGGATATGGTTTTTGATGCGGAGTCTAAGTCAGTGT
TGCACACGGAGATGGCCAAGAAAAATCTTTTTGTTAAACGAGGCATTGTTGCTGATGCAGATGCTTATGACCAAAGTAAACGTTTGAGAACTGGTGGTGAATATG
CCCACACCGGGTATTCGAGCCCATCACCATTTCATGCACCTCCACGTCCTATTTGGGGACCTCACGGGTATATGGCTCCACCTCCTCCTCCATATGATCCATATG
GAAGTTACCCTGTTCATCCTGTACCTATGCCTGCTCCTGCACCTGTACCAGCACCTTGCAGCTATGTGCCTGTTCAGAACACAAAAGATAATCCTCCTTGCAATA
CACTGTTCATTGGCAATCTGGGGGAAAATGTAAATGAAGAGGAGCTCAGAGGTCTTTTTAGCGTACAACCGGGATTTAAGCAAATGAAGACTCTGAGGCAGGAAA
GGCATAAAGTCTGTTTCATTGAATTTGAAGATGTGAACACTGCCTCCAATGTGCATCATCTTTTGCAGGGTGCTGTTATTCCTAGTTCTGGCTCTAACCCGTTTG
GTAAACGGAAAGATGCTACCTATCCTGTTTCTGCTCCTGGGGCCAATGGA
Protein sequenceShow/hide protein sequence
MAGTGIHPYHHQWSAAAAPPPPPQATAIAPPPIPYPHPSHILVDNPARHASDEVRTIFLTGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQLA
IAAKDALQDMVFDAESKSVLHTEMAKKNLFVKRGIVADADAYDQSKRLRTGGEYAHTGYSSPSPFHAPPRPIWGPHGYMAPPPPPYDPYGSYPVHPVPMPAPAPV
PAPCSYVPVQNTKDNPPCNTLFIGNLGENVNEEELRGLFSVQPGFKQMKTLRQERHKVCFIEFEDVNTASNVHHLLQGAVIPSSGSNPFGKRKDATYPVSAPGAN
G