CuGenDBv2

Gene ID	CmaCh08G008510
Organism	Cucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description	KH domain-containing protein
Genome location	Cma_Chr08:5172007..5173483
RNA-Seq Expression	CmaCh08G008510
Synteny	CmaCh08G008510
Gene Ontology terms	GO:0010468 - regulation of gene expression (biological process) GO:0005634 - nucleus (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0003729 - mRNA binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7013935.1 KH domain-containing protein HEN4 [Cucurbita argyrosperma subsp. argyrosperma]

2.5e-10

66.07

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Query:  HVYGDCSCS---ADIYNGAMVVVNHAKPGMFDGKVIVSGTPDQIRAAQRLVHAFVL
        H+YG+ + +       +GAMVVV+ AKPG+FDGKV+VSGTPDQIRAAQRLVHAF+L
Subjt:  HVYGDCSCS---ADIYNGAMVVVNHAKPGMFDGKVIVSGTPDQIRAAQRLVHAFVL

XP_022954262.1 KH domain-containing protein HEN4 [Cucurbita moschata]

2.5e-10

66.07

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Query:  HVYGDCSCS---ADIYNGAMVVVNHAKPGMFDGKVIVSGTPDQIRAAQRLVHAFVL
        H+YG+ + +       +GAMVVV+ AKPG+FDGKV+VSGTPDQIRAAQRLVHAF+L
Subjt:  HVYGDCSCS---ADIYNGAMVVVNHAKPGMFDGKVIVSGTPDQIRAAQRLVHAFVL

XP_022992173.1 KH domain-containing protein HEN4 [Cucurbita maxima]

2.5e-10

66.07

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Query:  HVYGDCSCS---ADIYNGAMVVVNHAKPGMFDGKVIVSGTPDQIRAAQRLVHAFVL
        H+YG+ + +       +GAMVVV+ AKPG+FDGKV+VSGTPDQIRAAQRLVHAF+L
Subjt:  HVYGDCSCS---ADIYNGAMVVVNHAKPGMFDGKVIVSGTPDQIRAAQRLVHAFVL

XP_023547673.1 KH domain-containing protein HEN4 [Cucurbita pepo subsp. pepo]

2.5e-10

66.07

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Query:  HVYGDCSCS---ADIYNGAMVVVNHAKPGMFDGKVIVSGTPDQIRAAQRLVHAFVL
        H+YG+ + +       +GAMVVV+ AKPG+FDGKV+VSGTPDQIRAAQRLVHAF+L
Subjt:  HVYGDCSCS---ADIYNGAMVVVNHAKPGMFDGKVIVSGTPDQIRAAQRLVHAFVL

XP_038898275.1 KH domain-containing protein HEN4 [Benincasa hispida]

5.0e-11

71.43

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Query:  HVYGDCS---CSADIYNGAMVVVNHAKPGMFDGKVIVSGTPDQIRAAQRLVHAFVL
        H+YG+ S         +GAMVVV+ AKPGMFDGKVIVSGTPDQIRAAQRLVHAF+L
Subjt:  HVYGDCS---CSADIYNGAMVVVNHAKPGMFDGKVIVSGTPDQIRAAQRLVHAFVL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAK5 Uncharacterized protein

2.7e-10

66.07

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Query:  HVYGDCS---CSADIYNGAMVVVNHAKPGMFDGKVIVSGTPDQIRAAQRLVHAFVL
        H+YG+ +         +GAM+VV+ AKPGMFDGKVI+SGTPDQIRAAQRLVHAF+L
Subjt:  HVYGDCS---CSADIYNGAMVVVNHAKPGMFDGKVIVSGTPDQIRAAQRLVHAFVL

A0A5A7UW07 KH domain-containing protein

7.7e-10

64.29

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Query:  HVYGDCS---CSADIYNGAMVVVNHAKPGMFDGKVIVSGTPDQIRAAQRLVHAFVL
        H+YG+ +         +GAM+VV+ AKPGMFDGKVI+SGTP+QIRAAQRLVHAF+L
Subjt:  HVYGDCS---CSADIYNGAMVVVNHAKPGMFDGKVIVSGTPDQIRAAQRLVHAFVL

A0A6J1D836 KH domain-containing protein HEN4

5.9e-10

66.07

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Query:  HVYGDCSCS---ADIYNGAMVVVNHAKPGMFDGKVIVSGTPDQIRAAQRLVHAFVL
        H+YG+ + +       +GAMVVV+ AK GMFDGKVIVSG+PDQIRAAQRLVHAF+L
Subjt:  HVYGDCSCS---ADIYNGAMVVVNHAKPGMFDGKVIVSGTPDQIRAAQRLVHAFVL

A0A6J1GQJ7 KH domain-containing protein HEN4

1.2e-10

66.07

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Query:  HVYGDCSCS---ADIYNGAMVVVNHAKPGMFDGKVIVSGTPDQIRAAQRLVHAFVL
        H+YG+ + +       +GAMVVV+ AKPG+FDGKV+VSGTPDQIRAAQRLVHAF+L
Subjt:  HVYGDCSCS---ADIYNGAMVVVNHAKPGMFDGKVIVSGTPDQIRAAQRLVHAFVL

A0A6J1JYF4 KH domain-containing protein HEN4

1.2e-10

66.07

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Query:  HVYGDCSCS---ADIYNGAMVVVNHAKPGMFDGKVIVSGTPDQIRAAQRLVHAFVL
        H+YG+ + +       +GAMVVV+ AKPG+FDGKV+VSGTPDQIRAAQRLVHAF+L
Subjt:  HVYGDCSCS---ADIYNGAMVVVNHAKPGMFDGKVIVSGTPDQIRAAQRLVHAFVL

SwissProt top hits

e value

%identity

Alignment

F4KDN0 KH domain-containing protein HEN4

6.1e-04

47.5

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Query:  NGAMVVVNHAKPGMFDGKVIVSGTPDQIRAAQRLVHAFVL
        +GA V+++    G  D  +++SGTPDQ +AAQ L+HAF+L
Subjt:  NGAMVVVNHAKPGMFDGKVIVSGTPDQIRAAQRLVHAFVL

Arabidopsis top hits

e value

%identity

Alignment

AT1G51580.1 RNA-binding KH domain-containing protein

2.3e-06

50.88

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Query:  HVYGDCSCSADIY----NGAMVVVNHAKPGMFDGKVIVSGTPDQIRAAQRLVHAFVL
        HVYG+ +CS   Y    +GA VVV+  K G  +G V+VSGT DQ   AQ L+HAF+L
Subjt:  HVYGDCSCSADIY----NGAMVVVNHAKPGMFDGKVIVSGTPDQIRAAQRLVHAFVL

AT5G64390.1 RNA-binding KH domain-containing protein

4.3e-05

47.5

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Query:  NGAMVVVNHAKPGMFDGKVIVSGTPDQIRAAQRLVHAFVL
        +GA V+++    G  D  +++SGTPDQ +AAQ L+HAF+L
Subjt:  NGAMVVVNHAKPGMFDGKVIVSGTPDQIRAAQRLVHAFVL

AT5G64390.3 RNA-binding KH domain-containing protein

4.3e-05

47.5

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Query:  NGAMVVVNHAKPGMFDGKVIVSGTPDQIRAAQRLVHAFVL
        +GA V+++    G  D  +++SGTPDQ +AAQ L+HAF+L
Subjt:  NGAMVVVNHAKPGMFDGKVIVSGTPDQIRAAQRLVHAFVL

Sequences

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CDS sequence

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ATGACTCAATGTTGTAGGGTTCAGAATGAAATTGGATATGAACCAGGTGCTGCAGTTGTTGCTAGACTACTTGTACATGCACAACAGATAAGGCTATTTGTACTA
AACGTTACCTGCCCAAGCTTATTGTACAGTACAATCATTCTAAATCGGGTGTCCAGCTCATTTTCTGGGAGGCACGTCTATGGAGATTGTTCATGTTCAGCAGAT
ATATATAACGGGGCAATGGTGGTGGTTAATCATGCTAAACCTGGGATGTTTGATGGCAAAGTGATCGTGTCTGGCACGCCAGATCAGATTCGGGCTGCCCAGAGA
CTCGTCCATGCCTTCGTCTTAAGAGCTATTAAATTAGTACACGTCCACGATACCGTCGTTTCCAAGATGAATTGGCCACAAGGGTCTCTGTCGATGGATGGGATT
CATGATTCATAG

mRNA sequence

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Protein sequence

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MTQCCRVQNEIGYEPGAAVVARLLVHAQQIRLFVLNVTCPSLLYSTIILNRVSSSFSGRHVYGDCSCSADIYNGAMVVVNHAKPGMFDGKVIVSGTPDQIRAAQR
LVHAFVLRAIKLVHVHDTVVSKMNWPQGSLSMDGIHDS

CmaCh08G008510 (gene) of Cucurbita maxima (Rimu) v1.1 genome