; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmaCh09G000130 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh09G000130
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Descriptionsplicing factor U2af small subunit B-like
Genome locationCma_Chr09:87546..88304
RNA-Seq ExpressionCmaCh09G000130
SyntenyCmaCh09G000130
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0089701 - U2AF (cellular component)
GO:0030628 - pre-mRNA 3'-splice site binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000571 - Zinc finger, CCCH-type
IPR009145 - U2 auxiliary factor small subunit
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6608662.1 Splicing factor U2af small subunit A, partial [Cucurbita argyrosperma subsp. sororia]8.5e-11584.58Show/hide
Query:  MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV
        MAEHLASIFG+EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIE LN+
Subjt:  MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV

Query:  CDNLADHMIDNVYVQFWEDDQAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG-RHRGYRRSRSRSR
        CDNLADHMI NVYVQF E+DQAAAALQALQ RFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG R RGYRRSRSRSR
Subjt:  CDNLADHMIDNVYVQFWEDDQAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG-RHRGYRRSRSRSR

Query:  SLSPRNRRSWIGARGITEIVSLAETDGARSVMIGMIGMGEGEGMVAPDEAEAL
        SLSPRNR+ +   R +TE                   MGEGEGM AP EAE L
Subjt:  SLSPRNRRSWIGARGITEIVSLAETDGARSVMIGMIGMGEGEGMVAPDEAEAL

XP_022142994.1 splicing factor U2af small subunit B-like [Momordica charantia]4.7e-11395.22Show/hide
Query:  MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV
        MAEHLASIFG+EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIE LNV
Subjt:  MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV

Query:  CDNLADHMIDNVYVQFWEDDQAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYRRSRSRSRS
        CDNLADHMI NVYVQF E+DQAAAALQALQ RFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGR+RGYRRSRSRSRS
Subjt:  CDNLADHMIDNVYVQFWEDDQAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYRRSRSRSRS

Query:  LSPRNRRSW
        LSPRNR+ +
Subjt:  LSPRNRRSW

XP_022936161.1 splicing factor U2af small subunit B-like [Cucurbita moschata]3.6e-11396.17Show/hide
Query:  MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV
        MAEHLASIFG+EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV
Subjt:  MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV

Query:  CDNLADHMIDNVYVQFWEDDQAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYR--RSRSRS
        CDNLADHMI NVYVQF E+DQAAAALQALQ RFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYR  RSRSRS
Subjt:  CDNLADHMIDNVYVQFWEDDQAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYR--RSRSRS

Query:  RSLSPRNRR
        RSLSPRNR+
Subjt:  RSLSPRNRR

XP_023521110.1 splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo]1.1e-11497.1Show/hide
Query:  MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV
        MAEHLASIFG+EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV
Subjt:  MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV

Query:  CDNLADHMIDNVYVQFWEDDQAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYRRSRSRSRS
        CDNLADHMI NVYVQF E+DQAAAALQALQ RFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYRRSRSRSRS
Subjt:  CDNLADHMIDNVYVQFWEDDQAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYRRSRSRSRS

Query:  LSPRNRR
        LSPRNR+
Subjt:  LSPRNRR

XP_038900064.1 splicing factor U2af small subunit B-like [Benincasa hispida]7.9e-11396.14Show/hide
Query:  MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV
        MAEHLASIFG+EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIE LNV
Subjt:  MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV

Query:  CDNLADHMIDNVYVQFWEDDQAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYRRSRSRSRS
        CDNLADHMI NVYVQF E+DQAAAALQALQ RFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGR+RGYRRSRSRSRS
Subjt:  CDNLADHMIDNVYVQFWEDDQAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYRRSRSRSRS

Query:  LSPRNRR
        LSPRNR+
Subjt:  LSPRNRR

TrEMBL top hitse value%identityAlignment
A0A0A0L4P8 Uncharacterized protein1.9e-11295.65Show/hide
Query:  MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV
        MAEHLASIFG+EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIE LNV
Subjt:  MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV

Query:  CDNLADHMIDNVYVQFWEDDQAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYRRSRSRSRS
        CDNLADHMI NVYVQF E+DQAAAALQALQ RFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGR+RGYR SRSRSRS
Subjt:  CDNLADHMIDNVYVQFWEDDQAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYRRSRSRSRS

Query:  LSPRNRR
        LSPRNR+
Subjt:  LSPRNRR

A0A1S3BUN6 splicing factor U2af small subunit B-like1.5e-11294.74Show/hide
Query:  MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV
        MAEHLASIFG+EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIE LNV
Subjt:  MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV

Query:  CDNLADHMIDNVYVQFWEDDQAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYRRSRSRSRS
        CDNLADHMI NVYVQF E+DQAAAALQALQ RFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGR+RGYR SRSRSRS
Subjt:  CDNLADHMIDNVYVQFWEDDQAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYRRSRSRSRS

Query:  LSPRNRRSW
        LSPRNR+ +
Subjt:  LSPRNRRSW

A0A5A7VFL1 Splicing factor U2af small subunit B-like1.5e-11294.74Show/hide
Query:  MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV
        MAEHLASIFG+EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIE LNV
Subjt:  MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV

Query:  CDNLADHMIDNVYVQFWEDDQAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYRRSRSRSRS
        CDNLADHMI NVYVQF E+DQAAAALQALQ RFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGR+RGYR SRSRSRS
Subjt:  CDNLADHMIDNVYVQFWEDDQAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYRRSRSRSRS

Query:  LSPRNRRSW
        LSPRNR+ +
Subjt:  LSPRNRRSW

A0A6J1CN17 splicing factor U2af small subunit B-like2.3e-11395.22Show/hide
Query:  MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV
        MAEHLASIFG+EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIE LNV
Subjt:  MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV

Query:  CDNLADHMIDNVYVQFWEDDQAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYRRSRSRSRS
        CDNLADHMI NVYVQF E+DQAAAALQALQ RFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGR+RGYRRSRSRSRS
Subjt:  CDNLADHMIDNVYVQFWEDDQAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYRRSRSRSRS

Query:  LSPRNRRSW
        LSPRNR+ +
Subjt:  LSPRNRRSW

A0A6J1F6R3 splicing factor U2af small subunit B-like1.7e-11396.17Show/hide
Query:  MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV
        MAEHLASIFG+EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV
Subjt:  MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV

Query:  CDNLADHMIDNVYVQFWEDDQAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYR--RSRSRS
        CDNLADHMI NVYVQF E+DQAAAALQALQ RFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYR  RSRSRS
Subjt:  CDNLADHMIDNVYVQFWEDDQAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYR--RSRSRS

Query:  RSLSPRNRR
        RSLSPRNR+
Subjt:  RSLSPRNRR

SwissProt top hitse value%identityAlignment
A1A4K8 Splicing factor U2AF 35 kDa subunit2.2e-6554.42Show/hide
Query:  MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEEL-GKFGEIECLN
        MAE+LASIFG+EKD+VNC FYFKIGACRHGDRCSRLHN+PT S T+ L N+Y+ P   +   D     +   ++QEH+++F+E+++ E+  K+GE+E +N
Subjt:  MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEEL-GKFGEIECLN

Query:  VCDNLADHMIDNVYVQFWEDDQAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYRRSRSRSR
        VCDNL DH++ NVYV+F  ++ A  A+  L  R+++G+PI A+ SPVTDFREA CRQYE   C RGG+CNFMH+K I ++LRR+L+GR R   RSRSRSR
Subjt:  VCDNLADHMIDNVYVQFWEDDQAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYRRSRSRSR

Query:  SLSPRNRRSWIGARG
            R+R    G  G
Subjt:  SLSPRNRRSWIGARG

Q6AUG0 Splicing factor U2af small subunit B8.0e-10075.21Show/hide
Query:  MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV
        MAEHLASIFG+EKDRVNCPFYFKIGACRHGDRCSRLHNRPT+SPT++L+NMYQRPDMITPGVDAQGQPIDP K+QEHFEDFYEDIYEEL KFGE+E LNV
Subjt:  MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV

Query:  CDNLADHMIDNVYVQFWEDDQAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYRRSRSRSRS
        CDNLADHMI NVYVQF E++QA AA  ALQ RFYSGRPII ++SPVTDFREATCRQ+EEN+CNRGGYCNFMHVK IG++LRRKL+G     RRS  RSRS
Subjt:  CDNLADHMIDNVYVQFWEDDQAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYRRSRSRSRS

Query:  LSPRNRRSWIGARGITEIVSLAETDGARSVMIGMIGMGEGEG
         SPR+RR   G R   +     E DG R    G  G G G G
Subjt:  LSPRNRRSWIGARGITEIVSLAETDGARSVMIGMIGMGEGEG

Q9FMY5 Splicing factor U2af small subunit B4.1e-10487.08Show/hide
Query:  MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV
        MAEHLASIFG+EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVD QGQP+DP KIQ+HFEDFYEDI+EEL KFGE+E LNV
Subjt:  MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV

Query:  CDNLADHMIDNVYVQFWEDDQAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRH-RGYRR-SRSRS
        CDNLADHMI NVYV F E+D AAAALQALQ RFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK I ++LRRKLFGR+ R YRR SRSRS
Subjt:  CDNLADHMIDNVYVQFWEDDQAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRH-RGYRR-SRSRS

Query:  RSLSPRNRR
        RS+SPR +R
Subjt:  RSLSPRNRR

Q9S709 Splicing factor U2af small subunit A2.7e-10888.63Show/hide
Query:  MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV
        MAEHLASIFG+EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQP+DPRKIQEHFEDF+ED++EELGKFGEIE LN+
Subjt:  MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV

Query:  CDNLADHMIDNVYVQFWEDDQAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRH-RGYR---RSRS
        CDNLADHMI NVYVQF E+DQAAAALQALQ RFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVK++ ++LRRKLFGR+ R YR   RSRS
Subjt:  CDNLADHMIDNVYVQFWEDDQAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRH-RGYR---RSRS

Query:  RSRSLSPRNRR
        RSRS+SPRN+R
Subjt:  RSRSLSPRNRR

Q9ZQW8 Splicing factor U2af small subunit A3.5e-9580.3Show/hide
Query:  MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV
        MAEHLASIFG+EKDRVNCPFYFKIGACRHGDRCSRLHN+P++SPTLLLSNMY RPDMITPG+DAQG PIDP KIQ  FEDFYEDI+EEL K+GEIE L+V
Subjt:  MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV

Query:  CDNLADHMIDNVYVQFWEDDQAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYRRSRSRSRS
        CDN ADHMI NVYVQF E+DQAA ALQAL  R+YSGRPII +FSPV+DFREATCRQYEEN+CNRGGYCNFMHVK IG+DLR++LFG     RRS S  RS
Subjt:  CDNLADHMIDNVYVQFWEDDQAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYRRSRSRSRS

Query:  LSP
         SP
Subjt:  LSP

Arabidopsis top hitse value%identityAlignment
AT1G10320.1 Zinc finger C-x8-C-x5-C-x3-H type family protein3.1e-3038.32Show/hide
Query:  FGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHM
        FG+E+D+ +CPF+ K GACR G RCSR+H  P  S TLL+ NMY  P  IT   D +G      + +  +E+FYED++ E  K+GE+    VC N + H+
Subjt:  FGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHM

Query:  IDNVYVQFWEDDQAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEEN---NCNRGGYCNFMH
          NVYV +   + A  A Q++  R+++G+ +  +F  ++ ++ A C +Y ++    C+RG  CNF+H
Subjt:  IDNVYVQFWEDDQAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEEN---NCNRGGYCNFMH

AT1G27650.1 U2 snRNP auxiliary factor small subunit, putative2.0e-10988.63Show/hide
Query:  MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV
        MAEHLASIFG+EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQP+DPRKIQEHFEDF+ED++EELGKFGEIE LN+
Subjt:  MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV

Query:  CDNLADHMIDNVYVQFWEDDQAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRH-RGYR---RSRS
        CDNLADHMI NVYVQF E+DQAAAALQALQ RFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVK++ ++LRRKLFGR+ R YR   RSRS
Subjt:  CDNLADHMIDNVYVQFWEDDQAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRH-RGYR---RSRS

Query:  RSRSLSPRNRR
        RSRS+SPRN+R
Subjt:  RSRSLSPRNRR

AT1G27650.2 U2 snRNP auxiliary factor small subunit, putative2.6e-7785.71Show/hide
Query:  MYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIDNVYVQFWEDDQAAAALQALQWRFYSGRPIIADFSPVTDFR
        MYQRPDMITPGVDAQGQP+DPRKIQEHFEDF+ED++EELGKFGEIE LN+CDNLADHMI NVYVQF E+DQAAAALQALQ RFYSGRPIIADFSPVTDFR
Subjt:  MYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIDNVYVQFWEDDQAAAALQALQWRFYSGRPIIADFSPVTDFR

Query:  EATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRH-RGYR---RSRSRSRSLSPRNRR
        EATCRQYEENNCNRGGYCNFMHVK++ ++LRRKLFGR+ R YR   RSRSRSRS+SPRN+R
Subjt:  EATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRH-RGYR---RSRSRSRSLSPRNRR

AT5G42820.1 Zinc finger C-x8-C-x5-C-x3-H type family protein2.9e-10587.08Show/hide
Query:  MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV
        MAEHLASIFG+EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVD QGQP+DP KIQ+HFEDFYEDI+EEL KFGE+E LNV
Subjt:  MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV

Query:  CDNLADHMIDNVYVQFWEDDQAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRH-RGYRR-SRSRS
        CDNLADHMI NVYV F E+D AAAALQALQ RFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK I ++LRRKLFGR+ R YRR SRSRS
Subjt:  CDNLADHMIDNVYVQFWEDDQAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRH-RGYRR-SRSRS

Query:  RSLSPRNRR
        RS+SPR +R
Subjt:  RSLSPRNRR

AT5G42820.2 Zinc finger C-x8-C-x5-C-x3-H type family protein2.9e-10587.08Show/hide
Query:  MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV
        MAEHLASIFG+EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVD QGQP+DP KIQ+HFEDFYEDI+EEL KFGE+E LNV
Subjt:  MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV

Query:  CDNLADHMIDNVYVQFWEDDQAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRH-RGYRR-SRSRS
        CDNLADHMI NVYV F E+D AAAALQALQ RFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK I ++LRRKLFGR+ R YRR SRSRS
Subjt:  CDNLADHMIDNVYVQFWEDDQAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRH-RGYRR-SRSRS

Query:  RSLSPRNRR
        RS+SPR +R
Subjt:  RSLSPRNRR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGAACACTTGGCCTCAATATTTGGCTCGGAGAAGGACCGTGTCAACTGCCCTTTCTATTTCAAGATCGGCGCCTGCCGTCATGGAGATCGCTGCTCTCGCCTCCA
CAACCGCCCTACTATTTCCCCGACACTTCTCTTGTCGAACATGTACCAACGCCCCGACATGATCACCCCCGGCGTCGATGCTCAGGGCCAGCCTATAGATCCCCGAAAGA
TTCAGGAGCACTTTGAGGATTTCTATGAAGACATTTACGAGGAACTTGGTAAGTTCGGTGAGATCGAGTGCCTTAATGTCTGTGATAATCTCGCCGACCACATGATTGAC
AATGTCTACGTTCAGTTTTGGGAGGATGACCAGGCAGCTGCCGCATTACAAGCGTTGCAATGGCGGTTCTACTCTGGTCGACCCATTATCGCAGATTTTTCTCCGGTGAC
TGATTTCCGCGAAGCCACGTGCCGCCAATACGAGGAGAATAATTGCAATCGAGGGGGATATTGCAATTTTATGCATGTCAAGATGATCGGGAAGGATTTGAGGAGGAAGC
TGTTCGGTAGGCACCGGGGATATAGGCGGAGCCGGAGCAGGAGTAGAAGTTTGAGTCCGCGGAACCGGAGGAGTTGGATAGGCGCGAGAGGGATTACAGAGATCGTGAGT
CTCGCGGAAACGGACGGAGCAAGGAGCGTCATGATAGGTATGATAGGGATGGGGGAAGGAGAAGGCATGGTAGCCCCAGACGAAGCAGAAGCCCTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGAACACTTGGCCTCAATATTTGGCTCGGAGAAGGACCGTGTCAACTGCCCTTTCTATTTCAAGATCGGCGCCTGCCGTCATGGAGATCGCTGCTCTCGCCTCCA
CAACCGCCCTACTATTTCCCCGACACTTCTCTTGTCGAACATGTACCAACGCCCCGACATGATCACCCCCGGCGTCGATGCTCAGGGCCAGCCTATAGATCCCCGAAAGA
TTCAGGAGCACTTTGAGGATTTCTATGAAGACATTTACGAGGAACTTGGTAAGTTCGGTGAGATCGAGTGCCTTAATGTCTGTGATAATCTCGCCGACCACATGATTGAC
AATGTCTACGTTCAGTTTTGGGAGGATGACCAGGCAGCTGCCGCATTACAAGCGTTGCAATGGCGGTTCTACTCTGGTCGACCCATTATCGCAGATTTTTCTCCGGTGAC
TGATTTCCGCGAAGCCACGTGCCGCCAATACGAGGAGAATAATTGCAATCGAGGGGGATATTGCAATTTTATGCATGTCAAGATGATCGGGAAGGATTTGAGGAGGAAGC
TGTTCGGTAGGCACCGGGGATATAGGCGGAGCCGGAGCAGGAGTAGAAGTTTGAGTCCGCGGAACCGGAGGAGTTGGATAGGCGCGAGAGGGATTACAGAGATCGTGAGT
CTCGCGGAAACGGACGGAGCAAGGAGCGTCATGATAGGTATGATAGGGATGGGGGAAGGAGAAGGCATGGTAGCCCCAGACGAAGCAGAAGCCCTGTGA
Protein sequenceShow/hide protein sequence
MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMID
NVYVQFWEDDQAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYRRSRSRSRSLSPRNRRSWIGARGITEIVS
LAETDGARSVMIGMIGMGEGEGMVAPDEAEAL