; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmaCh09G003530 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh09G003530
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionRNA-binding protein 2-like isoform X1
Genome locationCma_Chr09:1459408..1462290
RNA-Seq ExpressionCmaCh09G003530
SyntenyCmaCh09G003530
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591477.1 RNA-binding protein 1, partial [Cucurbita argyrosperma subsp. sororia]1.2e-7063.86Show/hide
Query:  LTDSANSILQANVQLLAHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDLLKHDRELMDILNKYPEPVIGGGLSAKGYRPPFEDSLASQRQDIA
        LTDSANSILQANVQLLAHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDD  KHDR                            DSLASQRQDIA
Subjt:  LTDSANSILQANVQLLAHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDLLKHDRELMDILNKYPEPVIGGGLSAKGYRPPFEDSLASQRQDIA

Query:  VGSSPGLMDMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREIFSAHLLAMKTSELFTRSPDGVEIRLRYYVLSSSVKQDMPRLQWKLFK
        VGSSPGLMDMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRRE+            LF       +IR    V+    ++   +     F 
Subjt:  VGSSPGLMDMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREIFSAHLLAMKTSELFTRSPDGVEIRLRYYVLSSSVKQDMPRLQWKLFK

Query:  PSISGTTIAPDSKTKDDQTFDDKKPDSPALKIQFAHFPFRLPSNHDDGR
          I         +      FDDKKPDSPALKIQFAHFPFRLPSNHDDGR
Subjt:  PSISGTTIAPDSKTKDDQTFDDKKPDSPALKIQFAHFPFRLPSNHDDGR

XP_008452748.1 PREDICTED: RNA-binding protein 2-like isoform X1 [Cucumis melo]6.1e-5956.33Show/hide
Query:  AHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDLLKHDRELM--------DI--LNKYPEPVIGG---GLSAKGYRPPFEDSLASQRQDIAVGS
        A  AGSVARSGLSTYSEAPPL SYPNSTSIDQW+ PP D +  D   +        D+   +KYPEPVIGG   G+SA GY  PF DSLASQRQDIAVGS
Subjt:  AHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDLLKHDRELM--------DI--LNKYPEPVIGG---GLSAKGYRPPFEDSLASQRQDIAVGS

Query:  SPGLMDMAEIGHERANSLG-LRTADCDPISSRESNIIFVDGLPTDCTRREIFSAHLLAMKTSELFTRSPDGVEIRLRYYVLSSSVKQDMPRLQWKLFKPS
        SPG+M  A+IGHERANSL  +RTA+CDP S RESNI+FVDGLPTDCTRRE+            LF       +IR    V+    ++   +     F   
Subjt:  SPGLMDMAEIGHERANSLG-LRTADCDPISSRESNIIFVDGLPTDCTRREIFSAHLLAMKTSELFTRSPDGVEIRLRYYVLSSSVKQDMPRLQWKLFKPS

Query:  ISGTTIAPDSKTKDDQTFDDKKPDSPALKIQFAHFPFRLPSNHDD
        +         +      FDDKKPDSPALKIQFAHFPFRLPSNHDD
Subjt:  ISGTTIAPDSKTKDDQTFDDKKPDSPALKIQFAHFPFRLPSNHDD

XP_038896812.1 RNA-binding protein 2-like isoform X1 [Benincasa hispida]1.2e-5957.55Show/hide
Query:  AHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDLLKHDREL-------MDI--LNKYPEPVIG---GGLSAKGYRPPFEDSLASQRQDIAVGSS
        A  AGSVARSGLSTYSEAPPLTSYPNSTSIDQW+I PD L K    +        D+  ++ YPEPVIG    G SAKGY  PFEDSLASQRQDIAVGSS
Subjt:  AHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDLLKHDREL-------MDI--LNKYPEPVIG---GGLSAKGYRPPFEDSLASQRQDIAVGSS

Query:  PGLMDMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREIFSAHLLAMKTSELFTRSPDGVEIRLRYYVLSSSVKQDMPRLQWKLFKPSIS
        PG+M MA+  HERANSL LRTA+ DP SSRESNI+FVDGLPTDCTRRE+            LF       +IR+ +     S  + M     +  +   +
Subjt:  PGLMDMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREIFSAHLLAMKTSELFTRSPDGVEIRLRYYVLSSSVKQDMPRLQWKLFKPSIS

Query:  GTTIAPDSKTKDDQTFDDKKPDSPALKIQFAHFPFRLPSNHDDGR
         T +      +    FDDKKPDSP+LKIQFAHFPFRLPSNHDD R
Subjt:  GTTIAPDSKTKDDQTFDDKKPDSPALKIQFAHFPFRLPSNHDDGR

XP_038896813.1 RNA-binding protein 2-like isoform X2 [Benincasa hispida]3.2e-6057.55Show/hide
Query:  AHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDLLKHDREL-------MDI--LNKYPEPVIG---GGLSAKGYRPPFEDSLASQRQDIAVGSS
        A  AGSVARSGLSTYSEAPPLTSYPNSTSIDQW+I PD L K    +        D+  ++ YPEPVIG    G SAKGY  PFEDSLASQRQDIAVGSS
Subjt:  AHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDLLKHDREL-------MDI--LNKYPEPVIG---GGLSAKGYRPPFEDSLASQRQDIAVGSS

Query:  PGLMDMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREIFSAHLLAMKTSELFTRSPDGVEIRLRYYVLSSSVKQDMPRLQWKLFKPSIS
        PG+M MA+  HERANSL LRTA+ DP SSRESNI+FVDGLPTDCTRRE+            LF       +IR    V+    ++   +     F   I 
Subjt:  PGLMDMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREIFSAHLLAMKTSELFTRSPDGVEIRLRYYVLSSSVKQDMPRLQWKLFKPSIS

Query:  GTTIAPDSKTKDDQTFDDKKPDSPALKIQFAHFPFRLPSNHDDGR
                +      FDDKKPDSP+LKIQFAHFPFRLPSNHDD R
Subjt:  GTTIAPDSKTKDDQTFDDKKPDSPALKIQFAHFPFRLPSNHDDGR

XP_038896814.1 nuclear speckle RNA-binding protein B-like isoform X3 [Benincasa hispida]6.1e-5957.68Show/hide
Query:  GSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDLLKHDREL-------MDI--LNKYPEPVIG---GGLSAKGYRPPFEDSLASQRQDIAVGSSPGLM
        GSVARSGLSTYSEAPPLTSYPNSTSIDQW+I PD L K    +        D+  ++ YPEPVIG    G SAKGY  PFEDSLASQRQDIAVGSSPG+M
Subjt:  GSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDLLKHDREL-------MDI--LNKYPEPVIG---GGLSAKGYRPPFEDSLASQRQDIAVGSSPGLM

Query:  DMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREIFSAHLLAMKTSELFTRSPDGVEIRLRYYVLSSSVKQDMPRLQWKLFKPSISGTTI
         MA+  HERANSL LRTA+ DP SSRESNI+FVDGLPTDCTRRE+            LF       +IR+ +     S  + M     +  +   + T +
Subjt:  DMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREIFSAHLLAMKTSELFTRSPDGVEIRLRYYVLSSSVKQDMPRLQWKLFKPSISGTTI

Query:  APDSKTKDDQTFDDKKPDSPALKIQFAHFPFRLPSNHDDGR
              +    FDDKKPDSP+LKIQFAHFPFRLPSNHDD R
Subjt:  APDSKTKDDQTFDDKKPDSPALKIQFAHFPFRLPSNHDDGR

TrEMBL top hitse value%identityAlignment
A0A1S3BU06 RNA-binding protein 2-like isoform X12.9e-5956.33Show/hide
Query:  AHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDLLKHDRELM--------DI--LNKYPEPVIGG---GLSAKGYRPPFEDSLASQRQDIAVGS
        A  AGSVARSGLSTYSEAPPL SYPNSTSIDQW+ PP D +  D   +        D+   +KYPEPVIGG   G+SA GY  PF DSLASQRQDIAVGS
Subjt:  AHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDLLKHDRELM--------DI--LNKYPEPVIGG---GLSAKGYRPPFEDSLASQRQDIAVGS

Query:  SPGLMDMAEIGHERANSLG-LRTADCDPISSRESNIIFVDGLPTDCTRREIFSAHLLAMKTSELFTRSPDGVEIRLRYYVLSSSVKQDMPRLQWKLFKPS
        SPG+M  A+IGHERANSL  +RTA+CDP S RESNI+FVDGLPTDCTRRE+            LF       +IR    V+    ++   +     F   
Subjt:  SPGLMDMAEIGHERANSLG-LRTADCDPISSRESNIIFVDGLPTDCTRREIFSAHLLAMKTSELFTRSPDGVEIRLRYYVLSSSVKQDMPRLQWKLFKPS

Query:  ISGTTIAPDSKTKDDQTFDDKKPDSPALKIQFAHFPFRLPSNHDD
        +         +      FDDKKPDSPALKIQFAHFPFRLPSNHDD
Subjt:  ISGTTIAPDSKTKDDQTFDDKKPDSPALKIQFAHFPFRLPSNHDD

A0A1S3BUL5 RNA-binding protein 2-like isoform X21.1e-5856.43Show/hide
Query:  GSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDLLKHDRELM--------DI--LNKYPEPVIGG---GLSAKGYRPPFEDSLASQRQDIAVGSSPGL
        GSVARSGLSTYSEAPPL SYPNSTSIDQW+ PP D +  D   +        D+   +KYPEPVIGG   G+SA GY  PF DSLASQRQDIAVGSSPG+
Subjt:  GSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDLLKHDRELM--------DI--LNKYPEPVIGG---GLSAKGYRPPFEDSLASQRQDIAVGSSPGL

Query:  MDMAEIGHERANSLG-LRTADCDPISSRESNIIFVDGLPTDCTRREIFSAHLLAMKTSELFTRSPDGVEIRLRYYVLSSSVKQDMPRLQWKLFKPSISGT
        M  A+IGHERANSL  +RTA+CDP S RESNI+FVDGLPTDCTRRE+            LF       +IR    V+    ++   +     F   +   
Subjt:  MDMAEIGHERANSLG-LRTADCDPISSRESNIIFVDGLPTDCTRREIFSAHLLAMKTSELFTRSPDGVEIRLRYYVLSSSVKQDMPRLQWKLFKPSISGT

Query:  TIAPDSKTKDDQTFDDKKPDSPALKIQFAHFPFRLPSNHDD
              +      FDDKKPDSPALKIQFAHFPFRLPSNHDD
Subjt:  TIAPDSKTKDDQTFDDKKPDSPALKIQFAHFPFRLPSNHDD

A0A5D3D938 RNA-binding protein 2-like isoform X12.9e-5956.33Show/hide
Query:  AHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDLLKHDRELM--------DI--LNKYPEPVIGG---GLSAKGYRPPFEDSLASQRQDIAVGS
        A  AGSVARSGLSTYSEAPPL SYPNSTSIDQW+ PP D +  D   +        D+   +KYPEPVIGG   G+SA GY  PF DSLASQRQDIAVGS
Subjt:  AHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDLLKHDRELM--------DI--LNKYPEPVIGG---GLSAKGYRPPFEDSLASQRQDIAVGS

Query:  SPGLMDMAEIGHERANSLG-LRTADCDPISSRESNIIFVDGLPTDCTRREIFSAHLLAMKTSELFTRSPDGVEIRLRYYVLSSSVKQDMPRLQWKLFKPS
        SPG+M  A+IGHERANSL  +RTA+CDP S RESNI+FVDGLPTDCTRRE+            LF       +IR    V+    ++   +     F   
Subjt:  SPGLMDMAEIGHERANSLG-LRTADCDPISSRESNIIFVDGLPTDCTRREIFSAHLLAMKTSELFTRSPDGVEIRLRYYVLSSSVKQDMPRLQWKLFKPS

Query:  ISGTTIAPDSKTKDDQTFDDKKPDSPALKIQFAHFPFRLPSNHDD
        +         +      FDDKKPDSPALKIQFAHFPFRLPSNHDD
Subjt:  ISGTTIAPDSKTKDDQTFDDKKPDSPALKIQFAHFPFRLPSNHDD

A0A6J1CBB3 uncharacterized protein LOC1110099332.7e-5755.14Show/hide
Query:  GSVARSGLSTYSEAPPL-TSYPNSTSIDQWYIPPDDLLKHDR----------ELMDILNKYPEPVIGG---GLSAKGYRPPFEDSLASQRQDIAVGSSPG
        GSVARS  STYSEAPPL TSYPN+ SIDQW+ PPD L K             ++ DI N YPEPVIGG   G++AKGY  PFEDSLASQRQ+IAVGSSPG
Subjt:  GSVARSGLSTYSEAPPL-TSYPNSTSIDQWYIPPDDLLKHDR----------ELMDILNKYPEPVIGG---GLSAKGYRPPFEDSLASQRQDIAVGSSPG

Query:  LMDMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREIFSAHLLAMKTSELFTRSPDGVEIRLRYYVLSSSVKQDMPRLQWKLFKPSISGT
        L+ MA++GHERA+SLGLR A+C PIS+RESNI+FVDGLPTDCTRRE+            LF       +IR    V+    ++   +     F   +   
Subjt:  LMDMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREIFSAHLLAMKTSELFTRSPDGVEIRLRYYVLSSSVKQDMPRLQWKLFKPSISGT

Query:  TIAPDSKTKDDQTFDDKKPDSPALKIQFAHFPFRLPSNHDDGR
                     FDDKKPDSPALK+ FAHFPFRLPSNH+DGR
Subjt:  TIAPDSKTKDDQTFDDKKPDSPALKIQFAHFPFRLPSNHDDGR

A0A6J1FCR4 nuclear speckle RNA-binding protein A-like2.5e-5856.63Show/hide
Query:  LTDSANSILQANVQLLAHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDLLKHDRELMDILNKYPEPVIGGGLSAKGYRPPFEDSLASQRQDIA
        LTDSANSILQANVQLLAHAAG     G   Y+E                              +  ++ YPEPVIGGGLSAKGYR PFEDSLASQRQDIA
Subjt:  LTDSANSILQANVQLLAHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDLLKHDRELMDILNKYPEPVIGGGLSAKGYRPPFEDSLASQRQDIA

Query:  VGSSPGLMDMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREIFSAHLLAMKTSELFTRSPDGVEIRLRYYVLSSSVKQDMPRLQWKLFK
        VGSSPGLMDMA+IGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRRE+            LF       +IR    V+    ++   +     F 
Subjt:  VGSSPGLMDMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREIFSAHLLAMKTSELFTRSPDGVEIRLRYYVLSSSVKQDMPRLQWKLFK

Query:  PSISGTTIAPDSKTKDDQTFDDKKPDSPALKIQFAHFPFRLPSNHDDGR
          I         +      FDDKK DSPALKIQFAHFPFRLPSNHDDGR
Subjt:  PSISGTTIAPDSKTKDDQTFDDKKPDSPALKIQFAHFPFRLPSNHDDGR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGAACCTGCACGACCTTCATATTGATGATACAGTCTCAATGAATTATTTTGGCCAATTTAAGCATTTACGGAGAACCGGAGAAAGACGAGACCGCGGGAAGGTCGC
AGTTGCAGCGGAAGCAGAGCAGACGGCCAAGCCATGGAAGAGGATGCATTTAACCGATTCTGCGAACAGCATACTTCAAGCTAATGTTCAATTGTTGGCTCATGCAGCAG
GAAGTGTAGCGAGGTCTGGCCTTTCAACCTACTCTGAAGCACCTCCTTTGACATCTTACCCTAATTCGACCTCTATTGACCAATGGTACATCCCTCCTGATGATTTGCTG
AAACATGACCGGGAGCTTATGGATATACTGAATAAATACCCGGAACCAGTTATTGGGGGCGGTTTGAGTGCAAAAGGCTACAGACCTCCATTTGAAGATTCATTAGCAAG
TCAAAGACAAGATATTGCAGTGGGCAGTAGTCCAGGACTGATGGATATGGCAGAAATAGGTCATGAAAGGGCCAATTCTCTTGGTCTCAGAACTGCTGATTGCGATCCAA
TTTCGTCTCGGGAATCAAACATTATTTTCGTTGATGGACTTCCTACAGATTGTACTAGGAGAGAAATCTTTTCCGCCCATTTATTGGCTATGAAGACATCAGAGTTGTTC
ACAAGGAGCCCAGACGGCGTGGAGATAAGGCTACGGTATTATGTTTTGTCGAGTTCAGTGAAGCAAGATATGCCCAGGCTGCAATGGAAGCTCTTCAAGCCAAGTATATC
TGGCACTACAATTGCGCCGGATTCTAAGACAAAGGATGACCAAACTTTCGATGACAAAAAGCCTGATTCCCCTGCTTTGAAGATTCAATTTGCACATTTTCCTTTCCGCT
TACCATCTAACCACGATGACGGACGATGA
mRNA sequenceShow/hide mRNA sequence
ATGCTGAACCTGCACGACCTTCATATTGATGATACAGTCTCAATGAATTATTTTGGCCAATTTAAGCATTTACGGAGAACCGGAGAAAGACGAGACCGCGGGAAGGTCGC
AGTTGCAGCGGAAGCAGAGCAGACGGCCAAGCCATGGAAGAGGATGCATTTAACCGATTCTGCGAACAGCATACTTCAAGCTAATGTTCAATTGTTGGCTCATGCAGCAG
GAAGTGTAGCGAGGTCTGGCCTTTCAACCTACTCTGAAGCACCTCCTTTGACATCTTACCCTAATTCGACCTCTATTGACCAATGGTACATCCCTCCTGATGATTTGCTG
AAACATGACCGGGAGCTTATGGATATACTGAATAAATACCCGGAACCAGTTATTGGGGGCGGTTTGAGTGCAAAAGGCTACAGACCTCCATTTGAAGATTCATTAGCAAG
TCAAAGACAAGATATTGCAGTGGGCAGTAGTCCAGGACTGATGGATATGGCAGAAATAGGTCATGAAAGGGCCAATTCTCTTGGTCTCAGAACTGCTGATTGCGATCCAA
TTTCGTCTCGGGAATCAAACATTATTTTCGTTGATGGACTTCCTACAGATTGTACTAGGAGAGAAATCTTTTCCGCCCATTTATTGGCTATGAAGACATCAGAGTTGTTC
ACAAGGAGCCCAGACGGCGTGGAGATAAGGCTACGGTATTATGTTTTGTCGAGTTCAGTGAAGCAAGATATGCCCAGGCTGCAATGGAAGCTCTTCAAGCCAAGTATATC
TGGCACTACAATTGCGCCGGATTCTAAGACAAAGGATGACCAAACTTTCGATGACAAAAAGCCTGATTCCCCTGCTTTGAAGATTCAATTTGCACATTTTCCTTTCCGCT
TACCATCTAACCACGATGACGGACGATGA
Protein sequenceShow/hide protein sequence
MLNLHDLHIDDTVSMNYFGQFKHLRRTGERRDRGKVAVAAEAEQTAKPWKRMHLTDSANSILQANVQLLAHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDLL
KHDRELMDILNKYPEPVIGGGLSAKGYRPPFEDSLASQRQDIAVGSSPGLMDMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREIFSAHLLAMKTSELF
TRSPDGVEIRLRYYVLSSSVKQDMPRLQWKLFKPSISGTTIAPDSKTKDDQTFDDKKPDSPALKIQFAHFPFRLPSNHDDGR