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CmaCh09G006800 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh09G006800
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionRibosomal RNA small subunit methyltransferase G, putative
Genome locationCma_Chr09:3205037..3205480
RNA-Seq ExpressionCmaCh09G006800
SyntenyCmaCh09G006800
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7024654.1 hypothetical protein SDJN02_13472, partial [Cucurbita argyrosperma subsp. argyrosperma]4.7e-7394.08Show/hide
Query:  MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAATWAKQRKCEKTERRQTKATERWWWKGAADRRKVS-GGGETPVRLLG----GEGEDFGSRNSTAAV
        MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAA WAKQRKCEKTERRQTKA ERWWWKGAADRRKVS GGGETP RLL     GEGEDFGSRNSTAAV
Subjt:  MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAATWAKQRKCEKTERRQTKATERWWWKGAADRRKVS-GGGETPVRLLG----GEGEDFGSRNSTAAV

Query:  WQRPILMGEKCEMLKYSGLILYDERGRLLQDQIAAMENGYKVLLRKFFRSFS
        WQRPILMGEKCEMLKYSGLILYDERGRLLQDQIAAMENGYKVLLRKFFRSFS
Subjt:  WQRPILMGEKCEMLKYSGLILYDERGRLLQDQIAAMENGYKVLLRKFFRSFS

XP_022976856.1 uncharacterized protein LOC111477103 isoform X1 [Cucurbita maxima]6.5e-7599.29Show/hide
Query:  MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAATWAKQRKCEKTERRQTKATERWWWKGAADRRKVSGGGETPVRLLGGEGEDFGSRNSTAAVWQRPI
        MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAATWAKQRKCEKTERRQTKATERWWWKGAADRRKVSGGGETPVRLLGGEGEDFGSRNSTAAVWQRPI
Subjt:  MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAATWAKQRKCEKTERRQTKATERWWWKGAADRRKVSGGGETPVRLLGGEGEDFGSRNSTAAVWQRPI

Query:  LMGEKCEMLKYSGLILYDERGRLLQDQIAAMENGYKVLLRK
        LMGEKCEMLKYSGLILYDERGRLLQDQIAAMENGYKVLLR+
Subjt:  LMGEKCEMLKYSGLILYDERGRLLQDQIAAMENGYKVLLRK

XP_022976857.1 uncharacterized protein LOC111477103 isoform X2 [Cucurbita maxima]1.0e-72100Show/hide
Query:  MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAATWAKQRKCEKTERRQTKATERWWWKGAADRRKVSGGGETPVRLLGGEGEDFGSRNSTAAVWQRPI
        MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAATWAKQRKCEKTERRQTKATERWWWKGAADRRKVSGGGETPVRLLGGEGEDFGSRNSTAAVWQRPI
Subjt:  MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAATWAKQRKCEKTERRQTKATERWWWKGAADRRKVSGGGETPVRLLGGEGEDFGSRNSTAAVWQRPI

Query:  LMGEKCEMLKYSGLILYDERGRLLQDQIAAMENGYK
        LMGEKCEMLKYSGLILYDERGRLLQDQIAAMENGYK
Subjt:  LMGEKCEMLKYSGLILYDERGRLLQDQIAAMENGYK

XP_022976858.1 uncharacterized protein LOC111477103 isoform X3 [Cucurbita maxima]2.9e-75100Show/hide
Query:  MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAATWAKQRKCEKTERRQTKATERWWWKGAADRRKVSGGGETPVRLLGGEGEDFGSRNSTAAVWQRPI
        MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAATWAKQRKCEKTERRQTKATERWWWKGAADRRKVSGGGETPVRLLGGEGEDFGSRNSTAAVWQRPI
Subjt:  MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAATWAKQRKCEKTERRQTKATERWWWKGAADRRKVSGGGETPVRLLGGEGEDFGSRNSTAAVWQRPI

Query:  LMGEKCEMLKYSGLILYDERGRLLQDQIAAMENGYKVLLRK
        LMGEKCEMLKYSGLILYDERGRLLQDQIAAMENGYKVLLRK
Subjt:  LMGEKCEMLKYSGLILYDERGRLLQDQIAAMENGYKVLLRK

XP_023534958.1 uncharacterized protein LOC111796532 isoform X1 [Cucurbita pepo subsp. pepo]1.5e-7195.8Show/hide
Query:  MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAATWAKQRKCEKTERRQTKATERWWWKGAADRRKVSGGGETPVRLLG--GEGEDFGSRNSTAAVWQR
        MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAA WAKQRKCEKTERRQTKA ERWWWKGAAD RKVSGGGETPVRLLG  GEGEDFGSRNSTAAVWQR
Subjt:  MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAATWAKQRKCEKTERRQTKATERWWWKGAADRRKVSGGGETPVRLLG--GEGEDFGSRNSTAAVWQR

Query:  PILMGEKCEMLKYSGLILYDERGRLLQDQIAAMENGYKVLLRK
        PILMGEKCEMLKYSGLILYDERGRLLQDQIAAMENGYKVLLR+
Subjt:  PILMGEKCEMLKYSGLILYDERGRLLQDQIAAMENGYKVLLRK

TrEMBL top hitse value%identityAlignment
A0A6J1F750 uncharacterized protein LOC111442724 isoform X11.5e-6993.15Show/hide
Query:  MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAATWAKQRKCEKTERRQTKATERWWWKGAADRRKVS-GGGETPVRLLG----GEGEDFGSRNSTAAV
        MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAA WAKQRKCEKTERRQTKA ERWWWKGAADRRKVS GGGETP RLL     GEGEDFGSRNSTAAV
Subjt:  MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAATWAKQRKCEKTERRQTKATERWWWKGAADRRKVS-GGGETPVRLLG----GEGEDFGSRNSTAAV

Query:  WQRPILMGEKCEMLKYSGLILYDERGRLLQDQIAAMENGYKVLLRK
        WQRPILMGEKCEMLKYSGLILYDERGRLLQDQIAAMENGYKVLLR+
Subjt:  WQRPILMGEKCEMLKYSGLILYDERGRLLQDQIAAMENGYKVLLRK

A0A6J1FC12 uncharacterized protein LOC111442724 isoform X26.4e-6893.66Show/hide
Query:  MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAATWAKQRKCEKTERRQTKATERWWWKGAADRRKVS-GGGETPVRLLG----GEGEDFGSRNSTAAV
        MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAA WAKQRKCEKTERRQTKA ERWWWKGAADRRKVS GGGETP RLL     GEGEDFGSRNSTAAV
Subjt:  MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAATWAKQRKCEKTERRQTKATERWWWKGAADRRKVS-GGGETPVRLLG----GEGEDFGSRNSTAAV

Query:  WQRPILMGEKCEMLKYSGLILYDERGRLLQDQIAAMENGYKV
        WQRPILMGEKCEMLKYSGLILYDERGRLLQDQIAAMENGYKV
Subjt:  WQRPILMGEKCEMLKYSGLILYDERGRLLQDQIAAMENGYKV

A0A6J1IGV7 uncharacterized protein LOC111477103 isoform X25.1e-73100Show/hide
Query:  MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAATWAKQRKCEKTERRQTKATERWWWKGAADRRKVSGGGETPVRLLGGEGEDFGSRNSTAAVWQRPI
        MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAATWAKQRKCEKTERRQTKATERWWWKGAADRRKVSGGGETPVRLLGGEGEDFGSRNSTAAVWQRPI
Subjt:  MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAATWAKQRKCEKTERRQTKATERWWWKGAADRRKVSGGGETPVRLLGGEGEDFGSRNSTAAVWQRPI

Query:  LMGEKCEMLKYSGLILYDERGRLLQDQIAAMENGYK
        LMGEKCEMLKYSGLILYDERGRLLQDQIAAMENGYK
Subjt:  LMGEKCEMLKYSGLILYDERGRLLQDQIAAMENGYK

A0A6J1II18 uncharacterized protein LOC111477103 isoform X13.2e-7599.29Show/hide
Query:  MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAATWAKQRKCEKTERRQTKATERWWWKGAADRRKVSGGGETPVRLLGGEGEDFGSRNSTAAVWQRPI
        MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAATWAKQRKCEKTERRQTKATERWWWKGAADRRKVSGGGETPVRLLGGEGEDFGSRNSTAAVWQRPI
Subjt:  MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAATWAKQRKCEKTERRQTKATERWWWKGAADRRKVSGGGETPVRLLGGEGEDFGSRNSTAAVWQRPI

Query:  LMGEKCEMLKYSGLILYDERGRLLQDQIAAMENGYKVLLRK
        LMGEKCEMLKYSGLILYDERGRLLQDQIAAMENGYKVLLR+
Subjt:  LMGEKCEMLKYSGLILYDERGRLLQDQIAAMENGYKVLLRK

A0A6J1IND6 uncharacterized protein LOC111477103 isoform X31.4e-75100Show/hide
Query:  MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAATWAKQRKCEKTERRQTKATERWWWKGAADRRKVSGGGETPVRLLGGEGEDFGSRNSTAAVWQRPI
        MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAATWAKQRKCEKTERRQTKATERWWWKGAADRRKVSGGGETPVRLLGGEGEDFGSRNSTAAVWQRPI
Subjt:  MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAATWAKQRKCEKTERRQTKATERWWWKGAADRRKVSGGGETPVRLLGGEGEDFGSRNSTAAVWQRPI

Query:  LMGEKCEMLKYSGLILYDERGRLLQDQIAAMENGYKVLLRK
        LMGEKCEMLKYSGLILYDERGRLLQDQIAAMENGYKVLLRK
Subjt:  LMGEKCEMLKYSGLILYDERGRLLQDQIAAMENGYKVLLRK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G49000.1 unknown protein6.9e-0642.37Show/hide
Query:  VSGGGETPVRLLGGEGEDFGSRNSTAAVWQRPILMGEKCEMLKYSGLILYDERGRLLQD
        +S    T VR      E   +      +WQR ILMG KCE L +SG+I YD  GRLL +
Subjt:  VSGGGETPVRLLGGEGEDFGSRNSTAAVWQRPILMGEKCEMLKYSGLILYDERGRLLQD

AT3G14760.1 unknown protein1.8e-1435.81Show/hide
Query:  MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAAT----------------WA-----------KQRKCEKTERRQTKATERWWWKGAADRRKVSGGGE
        MEALW LE+K KL+T++A ++L  TA AV   C A                 WA           ++RKC+ ++ ++T     + W  AA   ++    +
Subjt:  MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAAT----------------WA-----------KQRKCEKTERRQTKATERWWWKGAADRRKVSGGGE

Query:  TPVRLLGGEGEDFGSRNSTAAVWQRPILMGEKCEMLKYSGLILYDERG
         P+  +        S N+   VWQRPILMGEKCE+ ++SGLILYDE G
Subjt:  TPVRLLGGEGEDFGSRNSTAAVWQRPILMGEKCEMLKYSGLILYDERG

AT3G18560.1 unknown protein1.3e-0464.52Show/hide
Query:  VWQRPILMGEKCEMLKYSGLILYDERGRLLQ
        VWQR ILMG KCE L YSG+I YD  G  L+
Subjt:  VWQRPILMGEKCEMLKYSGLILYDERGRLLQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCTCTGTGGAATTTAGAAGACAAATGGAAGCTCTCAACGCAACAAGCCTTCATTCTCTTAACGTGCACGGCGGTCGCCGTCCTAGGGTTTTGCGCGGCGACGTG
GGCGAAACAGAGGAAGTGCGAGAAGACAGAGCGCCGACAGACGAAGGCGACGGAGAGGTGGTGGTGGAAGGGGGCAGCGGATAGGCGGAAGGTGAGCGGCGGCGGAGAGA
CGCCGGTGCGGCTGTTGGGCGGCGAAGGGGAAGATTTCGGAAGCCGGAATTCGACGGCGGCGGTGTGGCAACGGCCGATTTTAATGGGGGAAAAGTGTGAGATGCTGAAA
TACAGTGGGCTTATTCTGTACGACGAAAGGGGAAGATTGCTGCAGGATCAAATTGCCGCCATGGAAAACGGTTACAAGGTGCTGCTTCGTAAGTTCTTTCGTAGTTTTTC
TTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGCTCTGTGGAATTTAGAAGACAAATGGAAGCTCTCAACGCAACAAGCCTTCATTCTCTTAACGTGCACGGCGGTCGCCGTCCTAGGGTTTTGCGCGGCGACGTG
GGCGAAACAGAGGAAGTGCGAGAAGACAGAGCGCCGACAGACGAAGGCGACGGAGAGGTGGTGGTGGAAGGGGGCAGCGGATAGGCGGAAGGTGAGCGGCGGCGGAGAGA
CGCCGGTGCGGCTGTTGGGCGGCGAAGGGGAAGATTTCGGAAGCCGGAATTCGACGGCGGCGGTGTGGCAACGGCCGATTTTAATGGGGGAAAAGTGTGAGATGCTGAAA
TACAGTGGGCTTATTCTGTACGACGAAAGGGGAAGATTGCTGCAGGATCAAATTGCCGCCATGGAAAACGGTTACAAGGTGCTGCTTCGTAAGTTCTTTCGTAGTTTTTC
TTAA
Protein sequenceShow/hide protein sequence
MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAATWAKQRKCEKTERRQTKATERWWWKGAADRRKVSGGGETPVRLLGGEGEDFGSRNSTAAVWQRPILMGEKCEMLK
YSGLILYDERGRLLQDQIAAMENGYKVLLRKFFRSFS