CuGenDBv2

Gene ID	CmaCh09G007690
Organism	Cucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description	plastid transcriptionally active 6
Genome location	Cma_Chr09:3710773..3714134
RNA-Seq Expression	CmaCh09G007690
Synteny	CmaCh09G007690
Gene Ontology terms	GO:0000427 - plastid-encoded plastid RNA polymerase complex (cellular component)
InterPro domains	IPR044710 - PLASTID TRANSCRIPTIONALLY ACTIVE protein 6

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0052214.1 uncharacterized protein E6C27_scaffold207G00250 [Cucumis melo var. makuwa]

3.4e-175

94.15

Show/hide

Query:  MNSTVFLLSSPLPLPPATIHRLRPPSISAASSLPHLPSLPYRKSTPSASPLFVPRRNPFRVFSDDGDGDSGGPDDYDMYDDEMEEVDNKKDFDIEYDTLA
        MNSTVFLLS  LPLPP TI+RLR  SISAA+SLPHLPSLPYRKSTPSASPLF+PRRNPFRVFSDDGDGDSGGPDDYDM D+EMEEVDNKKDFDIEYD L 
Subjt:  MNSTVFLLSSPLPLPPATIHRLRPPSISAASSLPHLPSLPYRKSTPSASPLFVPRRNPFRVFSDDGDGDSGGPDDYDMYDDEMEEVDNKKDFDIEYDTLA

Query:  AAAAAAAAAAGSEGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKY
          AAAAAAAAGS+GVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKY
Subjt:  AAAAAAAAAAGSEGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKY

Query:  IRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLKVFLTKHFRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVTVPGGRARDRRSDLLVVRDNGNSFK
        IRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLKVFLTKHFRNRRL DPEFVLDFEEIYVIDSKTKSITRA+VLVTVPGGR RDRRSDLLVVRDNGNSFK
Subjt:  IRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLKVFLTKHFRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVTVPGGRARDRRSDLLVVRDNGNSFK

Query:  IIHSVSSERDDPTTVIEKEEWTKTRQDMERHLRKLRDFSISN
        IIH  SSERDDPTTVIEKEEWTKTRQDMERHLRKLRDFSISN
Subjt:  IIHSVSSERDDPTTVIEKEEWTKTRQDMERHLRKLRDFSISN

KAG6591867.1 PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

3.4e-183

97.95

Show/hide

Query:  MNSTVFLLSSPLPLPPATIHRLRPPSISAASSLPHLPSLPYRKSTPSASPLFVPRRNPFRVFSDDGDGDSGGPDDYDMYDDEMEEVDNKKDFDIEYDTLA
        MNSTVFLLSS  PLPPATIHRLRPPSISAASSL HLPSLPYRKSTPSASPLFVPRRNPFRVFSDDGDGDSGGPDDYDMYDDEMEEVDNKKDFDIEYDTL 
Subjt:  MNSTVFLLSSPLPLPPATIHRLRPPSISAASSLPHLPSLPYRKSTPSASPLFVPRRNPFRVFSDDGDGDSGGPDDYDMYDDEMEEVDNKKDFDIEYDTLA

Query:  AAAAAAAAAAGSEGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKY
         AAAAAAAAAGSEGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKY
Subjt:  AAAAAAAAAAGSEGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKY

Query:  IRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLKVFLTKHFRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVTVPGGRARDRRSDLLVVRDNGNSFK
        IRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLKVFLTKHFRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVTVPGGRARDRRSDLLVVRDNGNSFK
Subjt:  IRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLKVFLTKHFRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVTVPGGRARDRRSDLLVVRDNGNSFK

Query:  IIHSVSSERDDPTTVIEKEEWTKTRQDMERHLRKLRDFSISN
        IIH  SSERDDPTTVIEKEEWTKTRQDMERHLRKLRDFSISN
Subjt:  IIHSVSSERDDPTTVIEKEEWTKTRQDMERHLRKLRDFSISN

XP_022935749.1 uncharacterized protein LOC111442572 [Cucurbita moschata]

2.4e-184

98.25

Show/hide

Query:  MNSTVFLLSSPLPLPPATIHRLRPPSISAASSLPHLPSLPYRKSTPSASPLFVPRRNPFRVFSDDGDGDSGGPDDYDMYDDEMEEVDNKKDFDIEYDTLA
        MNSTVFLLSS  PLPPATIHRLRPPSISAASSL HLPSL YRKSTPSASPLFVPRRNPFRVFSDDGDGDSGGPDDYDMYDDEMEEVDNKKDFDIEYDTLA
Subjt:  MNSTVFLLSSPLPLPPATIHRLRPPSISAASSLPHLPSLPYRKSTPSASPLFVPRRNPFRVFSDDGDGDSGGPDDYDMYDDEMEEVDNKKDFDIEYDTLA

Query:  AAAAAAAAAAGSEGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKY
        AAAAAAAAAAGSEGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKY
Subjt:  AAAAAAAAAAGSEGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKY

Query:  IRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLKVFLTKHFRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVTVPGGRARDRRSDLLVVRDNGNSFK
        IRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLKVFLTKHFRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVTVPGGRARDRRSDLLVVRDNGNSFK
Subjt:  IRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLKVFLTKHFRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVTVPGGRARDRRSDLLVVRDNGNSFK

Query:  IIHSVSSERDDPTTVIEKEEWTKTRQDMERHLRKLRDFSISN
        IIH  SSERDDPTTVIEKEEWTKTRQDMERHLRKLRDFSISN
Subjt:  IIHSVSSERDDPTTVIEKEEWTKTRQDMERHLRKLRDFSISN

XP_022976812.1 uncharacterized protein LOC111477076 [Cucurbita maxima]

3.2e-189

99.42

Show/hide

Query:  MNSTVFLLSSPLPLPPATIHRLRPPSISAASSLPHLPSLPYRKSTPSASPLFVPRRNPFRVFSDDGDGDSGGPDDYDMYDDEMEEVDNKKDFDIEYDTLA
        MNSTVFLLSSPLPLPPATIHRLRPPSISAASSLPHLPSLPYRKSTPSASPLFVPRRNPFRVFSDDGDGDSGGPDDYDMYDDEMEEVDNKKDFDIEYDTLA
Subjt:  MNSTVFLLSSPLPLPPATIHRLRPPSISAASSLPHLPSLPYRKSTPSASPLFVPRRNPFRVFSDDGDGDSGGPDDYDMYDDEMEEVDNKKDFDIEYDTLA

Query:  AAAAAAAAAAGSEGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKY
        AAAAAAAAAAGSEGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKY
Subjt:  AAAAAAAAAAGSEGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKY

Query:  IRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLKVFLTKHFRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVTVPGGRARDRRSDLLVVRDNGNSFK
        IRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLKVFLTKHFRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVTVPGGRARDRRSDLLVVRDNGNSFK
Subjt:  IRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLKVFLTKHFRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVTVPGGRARDRRSDLLVVRDNGNSFK

Query:  IIHSVSSERDDPTTVIEKEEWTKTRQDMERHLRKLRDFSISN
        IIH  SSERDDPTTVIEKEEWTKTRQDMERHLRKLRDFSISN
Subjt:  IIHSVSSERDDPTTVIEKEEWTKTRQDMERHLRKLRDFSISN

XP_023534952.1 uncharacterized protein LOC111796527 [Cucurbita pepo subsp. pepo]

1.3e-182

97.66

Show/hide

Query:  MNSTVFLLSSPLPLPPATIHRLRPPSISAASSLPHLPSLPYRKSTPSASPLFVPRRNPFRVFSDDGDGDSGGPDDYDMYDDEMEEVDNKKDFDIEYDTLA
        MNSTVFLLSS  PLPPATIHRLRPPSISAASSLPHL S PYRKSTPSASPLFVPRRNPFRVFSDDGDGDSGGPDDYDMYDDEMEEVDNKKDFDIEYDTL 
Subjt:  MNSTVFLLSSPLPLPPATIHRLRPPSISAASSLPHLPSLPYRKSTPSASPLFVPRRNPFRVFSDDGDGDSGGPDDYDMYDDEMEEVDNKKDFDIEYDTLA

Query:  AAAAAAAAAAGSEGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKY
         AAAAAAAAAGSEGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKY
Subjt:  AAAAAAAAAAGSEGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKY

Query:  IRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLKVFLTKHFRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVTVPGGRARDRRSDLLVVRDNGNSFK
        IRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLKVFLTKHFRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVTVPGGRARDRRSDLLVVRDNGNSFK
Subjt:  IRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLKVFLTKHFRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVTVPGGRARDRRSDLLVVRDNGNSFK

Query:  IIHSVSSERDDPTTVIEKEEWTKTRQDMERHLRKLRDFSISN
        IIH  SSERDDPTTVIEKEEWTKTRQDMERHLRKLRDFSISN
Subjt:  IIHSVSSERDDPTTVIEKEEWTKTRQDMERHLRKLRDFSISN

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BAM8 uncharacterized protein LOC103487613

1.6e-175

94.15

Show/hide

Query:  MNSTVFLLSSPLPLPPATIHRLRPPSISAASSLPHLPSLPYRKSTPSASPLFVPRRNPFRVFSDDGDGDSGGPDDYDMYDDEMEEVDNKKDFDIEYDTLA
        MNSTVFLLS  LPLPP TI+RLR  SISAA+SLPHLPSLPYRKSTPSASPLF+PRRNPFRVFSDDGDGDSGGPDDYDM D+EMEEVDNKKDFDIEYD L 
Subjt:  MNSTVFLLSSPLPLPPATIHRLRPPSISAASSLPHLPSLPYRKSTPSASPLFVPRRNPFRVFSDDGDGDSGGPDDYDMYDDEMEEVDNKKDFDIEYDTLA

Query:  AAAAAAAAAAGSEGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKY
          AAAAAAAAGS+GVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKY
Subjt:  AAAAAAAAAAGSEGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKY

Query:  IRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLKVFLTKHFRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVTVPGGRARDRRSDLLVVRDNGNSFK
        IRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLKVFLTKHFRNRRL DPEFVLDFEEIYVIDSKTKSITRA+VLVTVPGGR RDRRSDLLVVRDNGNSFK
Subjt:  IRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLKVFLTKHFRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVTVPGGRARDRRSDLLVVRDNGNSFK

Query:  IIHSVSSERDDPTTVIEKEEWTKTRQDMERHLRKLRDFSISN
        IIH  SSERDDPTTVIEKEEWTKTRQDMERHLRKLRDFSISN
Subjt:  IIHSVSSERDDPTTVIEKEEWTKTRQDMERHLRKLRDFSISN

A0A5A7UA32 Uncharacterized protein

1.6e-175

94.15

Show/hide

Query:  MNSTVFLLSSPLPLPPATIHRLRPPSISAASSLPHLPSLPYRKSTPSASPLFVPRRNPFRVFSDDGDGDSGGPDDYDMYDDEMEEVDNKKDFDIEYDTLA
        MNSTVFLLS  LPLPP TI+RLR  SISAA+SLPHLPSLPYRKSTPSASPLF+PRRNPFRVFSDDGDGDSGGPDDYDM D+EMEEVDNKKDFDIEYD L 
Subjt:  MNSTVFLLSSPLPLPPATIHRLRPPSISAASSLPHLPSLPYRKSTPSASPLFVPRRNPFRVFSDDGDGDSGGPDDYDMYDDEMEEVDNKKDFDIEYDTLA

Query:  AAAAAAAAAAGSEGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKY
          AAAAAAAAGS+GVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKY
Subjt:  AAAAAAAAAAGSEGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKY

Query:  IRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLKVFLTKHFRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVTVPGGRARDRRSDLLVVRDNGNSFK
        IRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLKVFLTKHFRNRRL DPEFVLDFEEIYVIDSKTKSITRA+VLVTVPGGR RDRRSDLLVVRDNGNSFK
Subjt:  IRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLKVFLTKHFRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVTVPGGRARDRRSDLLVVRDNGNSFK

Query:  IIHSVSSERDDPTTVIEKEEWTKTRQDMERHLRKLRDFSISN
        IIH  SSERDDPTTVIEKEEWTKTRQDMERHLRKLRDFSISN
Subjt:  IIHSVSSERDDPTTVIEKEEWTKTRQDMERHLRKLRDFSISN

A0A5B7BU76 Uncharacterized protein (Fragment)

5.7e-136

73.98

Show/hide

Query:  MNSTVFLLSSPLPLPPATIHRLRPPSISAASSLPHLPSLPYRKSTPSASPLFVPRRNPFRVFSDDGDGDSGGPDDYDMYDDEMEEVDNKKDFDIEYDTLA
        M +T+ LLS P  LPP      + P ++   SL   P+L +    P  + +F PR + FRV++DDGD D GGPDDYDM ++E EEVDNKKD+D+EYD LA
Subjt:  MNSTVFLLSSPLPLPPATIHRLRPPSISAASSLPHLPSLPYRKSTPSASPLFVPRRNPFRVFSDDGDGDSGGPDDYDMYDDEMEEVDNKKDFDIEYDTLA

Query:  AAAAAAAAAAGSEGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKY
        AA AAA         G ++I +V SKSFVS QGWDSE IVDYRINE+EFHKISLL CDFFIRKPPDPDNDVYDFREMYVTPPDTD+YAIPKVLAP+PQKY
Subjt:  AAAAAAAAAAGSEGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKY

Query:  IRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLKVFLTKHFRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVTVPGGRARDRRSDLLVVRDNGNSFK
        IRCA+SDYGCYNVTEPPIDAPRDPLYKSE+E+ KVFLTKH+RNRRLGDPEFVLDFEEIYVIDS+TKSITRAKVLVTVPGGR RDR+ DLLV+RDNG SFK
Subjt:  IRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLKVFLTKHFRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVTVPGGRARDRRSDLLVVRDNGNSFK

Query:  IIHSVSSERDDPTTVIEKEEWTKTRQDMERHLRKLRDFSISN
        IIH  SSERDDPTTVIE+EEW KTRQDMERHLRKLRDFS+SN
Subjt:  IIHSVSSERDDPTTVIEKEEWTKTRQDMERHLRKLRDFSISN

A0A6J1F6A7 uncharacterized protein LOC111442572

1.1e-184

98.25

Show/hide

Query:  MNSTVFLLSSPLPLPPATIHRLRPPSISAASSLPHLPSLPYRKSTPSASPLFVPRRNPFRVFSDDGDGDSGGPDDYDMYDDEMEEVDNKKDFDIEYDTLA
        MNSTVFLLSS  PLPPATIHRLRPPSISAASSL HLPSL YRKSTPSASPLFVPRRNPFRVFSDDGDGDSGGPDDYDMYDDEMEEVDNKKDFDIEYDTLA
Subjt:  MNSTVFLLSSPLPLPPATIHRLRPPSISAASSLPHLPSLPYRKSTPSASPLFVPRRNPFRVFSDDGDGDSGGPDDYDMYDDEMEEVDNKKDFDIEYDTLA

Query:  AAAAAAAAAAGSEGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKY
        AAAAAAAAAAGSEGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKY
Subjt:  AAAAAAAAAAGSEGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKY

Query:  IRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLKVFLTKHFRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVTVPGGRARDRRSDLLVVRDNGNSFK
        IRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLKVFLTKHFRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVTVPGGRARDRRSDLLVVRDNGNSFK
Subjt:  IRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLKVFLTKHFRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVTVPGGRARDRRSDLLVVRDNGNSFK

Query:  IIHSVSSERDDPTTVIEKEEWTKTRQDMERHLRKLRDFSISN
        IIH  SSERDDPTTVIEKEEWTKTRQDMERHLRKLRDFSISN
Subjt:  IIHSVSSERDDPTTVIEKEEWTKTRQDMERHLRKLRDFSISN

A0A6J1IGR4 uncharacterized protein LOC111477076

1.5e-189

99.42

Show/hide

Query:  MNSTVFLLSSPLPLPPATIHRLRPPSISAASSLPHLPSLPYRKSTPSASPLFVPRRNPFRVFSDDGDGDSGGPDDYDMYDDEMEEVDNKKDFDIEYDTLA
        MNSTVFLLSSPLPLPPATIHRLRPPSISAASSLPHLPSLPYRKSTPSASPLFVPRRNPFRVFSDDGDGDSGGPDDYDMYDDEMEEVDNKKDFDIEYDTLA
Subjt:  MNSTVFLLSSPLPLPPATIHRLRPPSISAASSLPHLPSLPYRKSTPSASPLFVPRRNPFRVFSDDGDGDSGGPDDYDMYDDEMEEVDNKKDFDIEYDTLA

Query:  AAAAAAAAAAGSEGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKY
        AAAAAAAAAAGSEGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKY
Subjt:  AAAAAAAAAAGSEGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKY

Query:  IRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLKVFLTKHFRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVTVPGGRARDRRSDLLVVRDNGNSFK
        IRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLKVFLTKHFRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVTVPGGRARDRRSDLLVVRDNGNSFK
Subjt:  IRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLKVFLTKHFRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVTVPGGRARDRRSDLLVVRDNGNSFK

Query:  IIHSVSSERDDPTTVIEKEEWTKTRQDMERHLRKLRDFSISN
        IIH  SSERDDPTTVIEKEEWTKTRQDMERHLRKLRDFSISN
Subjt:  IIHSVSSERDDPTTVIEKEEWTKTRQDMERHLRKLRDFSISN

SwissProt top hits

e value

%identity

Alignment

Q9XI19 PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic

5.5e-128

79.93

Show/hide

Query:  DDGDGDSGGPDDYDMYDDEMEEVDNKKDFDIEYDTLAAAAAAAAAAAGSEGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRK
        DD D D GG D+YDM D+E+EEVDNKKD+D+EYD LAAA AAA       G GD +I+ VQSKSF+STQGWDS+M+VDYRINE+EFHK+SL+ CDFFIRK
Subjt:  DDGDGDSGGPDDYDMYDDEMEEVDNKKDFDIEYDTLAAAAAAAAAAAGSEGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRK

Query:  PPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKYIRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLKVFLTKHFRNRRLGDPEFVLDFEEIYVIDS
        PPDPDNDVYDFREMYVTPPDTD+Y+IP+VLAPMPQKYIRCA SDYGCYNVTEPPIDAPRDPLYKSE+E+ KVFLTKH+RNRR  DPEFVLD EEIYVIDS
Subjt:  PPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKYIRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLKVFLTKHFRNRRLGDPEFVLDFEEIYVIDS

Query:  KTKSITRAKVLVTVPGGRARDRRSDLLVVRDNGNSFKIIHSVSSERDDPTTVIEKEEWTKTRQDMERHLRKLRDFSISN
        KTKSITRA+VLVTVPGGR RDR+ DLLV+RDNG SFKIIH    ERDDPTTVIE+EEWTKTR+DME+HLRKLRDFS+SN
Subjt:  KTKSITRAKVLVTVPGGRARDRRSDLLVVRDNGNSFKIIHSVSSERDDPTTVIEKEEWTKTRQDMERHLRKLRDFSISN

Arabidopsis top hits

e value

%identity

Alignment

AT1G21600.1 plastid transcriptionally active 6

3.9e-129

79.93

Show/hide

Query:  DDGDGDSGGPDDYDMYDDEMEEVDNKKDFDIEYDTLAAAAAAAAAAAGSEGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRK
        DD D D GG D+YDM D+E+EEVDNKKD+D+EYD LAAA AAA       G GD +I+ VQSKSF+STQGWDS+M+VDYRINE+EFHK+SL+ CDFFIRK
Subjt:  DDGDGDSGGPDDYDMYDDEMEEVDNKKDFDIEYDTLAAAAAAAAAAAGSEGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRK

Query:  PPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKYIRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLKVFLTKHFRNRRLGDPEFVLDFEEIYVIDS
        PPDPDNDVYDFREMYVTPPDTD+Y+IP+VLAPMPQKYIRCA SDYGCYNVTEPPIDAPRDPLYKSE+E+ KVFLTKH+RNRR  DPEFVLD EEIYVIDS
Subjt:  PPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKYIRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLKVFLTKHFRNRRLGDPEFVLDFEEIYVIDS

Query:  KTKSITRAKVLVTVPGGRARDRRSDLLVVRDNGNSFKIIHSVSSERDDPTTVIEKEEWTKTRQDMERHLRKLRDFSISN
        KTKSITRA+VLVTVPGGR RDR+ DLLV+RDNG SFKIIH    ERDDPTTVIE+EEWTKTR+DME+HLRKLRDFS+SN
Subjt:  KTKSITRAKVLVTVPGGRARDRRSDLLVVRDNGNSFKIIHSVSSERDDPTTVIEKEEWTKTRQDMERHLRKLRDFSISN

AT1G21600.2 plastid transcriptionally active 6

3.9e-129

79.93

Show/hide

Query:  DDGDGDSGGPDDYDMYDDEMEEVDNKKDFDIEYDTLAAAAAAAAAAAGSEGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRK
        DD D D GG D+YDM D+E+EEVDNKKD+D+EYD LAAA AAA       G GD +I+ VQSKSF+STQGWDS+M+VDYRINE+EFHK+SL+ CDFFIRK
Subjt:  DDGDGDSGGPDDYDMYDDEMEEVDNKKDFDIEYDTLAAAAAAAAAAAGSEGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRK

Query:  PPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKYIRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLKVFLTKHFRNRRLGDPEFVLDFEEIYVIDS
        PPDPDNDVYDFREMYVTPPDTD+Y+IP+VLAPMPQKYIRCA SDYGCYNVTEPPIDAPRDPLYKSE+E+ KVFLTKH+RNRR  DPEFVLD EEIYVIDS
Subjt:  PPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKYIRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLKVFLTKHFRNRRLGDPEFVLDFEEIYVIDS

Query:  KTKSITRAKVLVTVPGGRARDRRSDLLVVRDNGNSFKIIHSVSSERDDPTTVIEKEEWTKTRQDMERHLRKLRDFSISN
        KTKSITRA+VLVTVPGGR RDR+ DLLV+RDNG SFKIIH    ERDDPTTVIE+EEWTKTR+DME+HLRKLRDFS+SN
Subjt:  KTKSITRAKVLVTVPGGRARDRRSDLLVVRDNGNSFKIIHSVSSERDDPTTVIEKEEWTKTRQDMERHLRKLRDFSISN

Sequences

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CDS sequence

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ATGAACTCCACGGTTTTTCTCCTCTCGTCGCCGTTGCCGCTGCCGCCGGCCACAATCCACCGGCTACGACCTCCTTCCATTTCCGCCGCAAGTTCTCTTCCCCACCTCCC
TAGTTTGCCCTACCGAAAATCTACTCCCTCTGCATCCCCTCTCTTCGTCCCTAGAAGAAACCCTTTCCGCGTCTTCTCCGATGACGGCGACGGAGATAGTGGCGGCCCCG
ACGACTACGATATGTACGACGACGAAATGGAAGAAGTCGACAACAAGAAAGATTTCGACATCGAGTACGATACTCTAGCCGCGGCGGCGGCGGCTGCGGCTGCGGCTGCG
GGTTCTGAAGGCGTCGGCGACGAGAATATCTCGATTGTGCAGAGCAAAAGCTTCGTATCGACGCAGGGATGGGATTCGGAGATGATTGTGGATTATAGGATAAATGAAGA
GGAGTTTCATAAGATTAGTTTGTTGCACTGTGATTTCTTCATTAGGAAGCCGCCGGATCCTGACAATGATGTTTATGATTTCAGAGAGATGTATGTTACTCCTCCTGACA
CTGATGTTTATGCTATCCCCAAAGTTCTTGCTCCAATGCCTCAGAAGTATATTAGATGTGCTCAGAGTGATTATGGATGCTACAATGTCACAGAACCACCCATTGATGCA
CCTAGAGATCCATTATACAAGTCTGAGAAGGAGGTTCTTAAGGTATTCTTGACGAAGCACTTCAGAAACCGAAGGCTGGGTGATCCAGAATTCGTCCTAGACTTTGAGGA
AATATATGTGATCGATTCAAAAACCAAGTCAATCACCAGGGCTAAAGTCTTGGTCACAGTTCCAGGAGGACGAGCTAGGGACAGGAGAAGCGACTTACTTGTCGTTCGGG
ATAATGGGAACTCTTTCAAGATTATCCATTCGGTATCGAGCGAACGAGATGATCCGACCACGGTGATAGAGAAGGAAGAGTGGACGAAAACTAGACAAGATATGGAGAGA
CATCTTAGAAAGCTAAGGGACTTCAGCATTTCAAATTGA

mRNA sequence

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TATCCATCCGACAATATCCATCTACAAACTCCAATCCCGCCATGAACTCCACGGTTTTTCTCCTCTCGTCGCCGTTGCCGCTGCCGCCGGCCACAATCCACCGGCTACGA
CCTCCTTCCATTTCCGCCGCAAGTTCTCTTCCCCACCTCCCTAGTTTGCCCTACCGAAAATCTACTCCCTCTGCATCCCCTCTCTTCGTCCCTAGAAGAAACCCTTTCCG
CGTCTTCTCCGATGACGGCGACGGAGATAGTGGCGGCCCCGACGACTACGATATGTACGACGACGAAATGGAAGAAGTCGACAACAAGAAAGATTTCGACATCGAGTACG
ATACTCTAGCCGCGGCGGCGGCGGCTGCGGCTGCGGCTGCGGGTTCTGAAGGCGTCGGCGACGAGAATATCTCGATTGTGCAGAGCAAAAGCTTCGTATCGACGCAGGGA
TGGGATTCGGAGATGATTGTGGATTATAGGATAAATGAAGAGGAGTTTCATAAGATTAGTTTGTTGCACTGTGATTTCTTCATTAGGAAGCCGCCGGATCCTGACAATGA
TGTTTATGATTTCAGAGAGATGTATGTTACTCCTCCTGACACTGATGTTTATGCTATCCCCAAAGTTCTTGCTCCAATGCCTCAGAAGTATATTAGATGTGCTCAGAGTG
ATTATGGATGCTACAATGTCACAGAACCACCCATTGATGCACCTAGAGATCCATTATACAAGTCTGAGAAGGAGGTTCTTAAGGTATTCTTGACGAAGCACTTCAGAAAC
CGAAGGCTGGGTGATCCAGAATTCGTCCTAGACTTTGAGGAAATATATGTGATCGATTCAAAAACCAAGTCAATCACCAGGGCTAAAGTCTTGGTCACAGTTCCAGGAGG
ACGAGCTAGGGACAGGAGAAGCGACTTACTTGTCGTTCGGGATAATGGGAACTCTTTCAAGATTATCCATTCGGTATCGAGCGAACGAGATGATCCGACCACGGTGATAG
AGAAGGAAGAGTGGACGAAAACTAGACAAGATATGGAGAGACATCTTAGAAAGCTAAGGGACTTCAGCATTTCAAATTGA

Protein sequence

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MNSTVFLLSSPLPLPPATIHRLRPPSISAASSLPHLPSLPYRKSTPSASPLFVPRRNPFRVFSDDGDGDSGGPDDYDMYDDEMEEVDNKKDFDIEYDTLAAAAAAAAAAA
GSEGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKYIRCAQSDYGCYNVTEPPIDA
PRDPLYKSEKEVLKVFLTKHFRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVTVPGGRARDRRSDLLVVRDNGNSFKIIHSVSSERDDPTTVIEKEEWTKTRQDMER
HLRKLRDFSISN

CmaCh09G007690 (gene) of Cucurbita maxima (Rimu) v1.1 genome