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CmaCh09G008080 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh09G008080
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionRNase H domain-containing protein
Genome locationCma_Chr09:3942163..3943469
RNA-Seq ExpressionCmaCh09G008080
SyntenyCmaCh09G008080
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAE5964481.1 unnamed protein product [Arabidopsis arenosa]2.6e-0774.42Show/hide
Query:  IIISSIVPVVPKNTRGASDFLFIPTGIASNAPATENTQVPSAL
        I++SSIVPVVPK T GA DF F+PTGIA+ AP TENT VPSAL
Subjt:  IIISSIVPVVPKNTRGASDFLFIPTGIASNAPATENTQVPSAL

KAE8077422.1 hypothetical protein FH972_015987 [Carpinus fangiana]7.9e-1266.67Show/hide
Query:  VWKSMGRTSCIKALTPIIISSIVPVVPKNTRGASDFLFIPTGIASNAPATENTQVPSALW
        +W+S    S  +A+ P+IISS+VPVVPKNTRGA DF FIPTGIAS APATE T VP  LW
Subjt:  VWKSMGRTSCIKALTPIIISSIVPVVPKNTRGASDFLFIPTGIASNAPATENTQVPSALW

KAF4395965.1 hypothetical protein F8388_013134 [Cannabis sativa]3.4e-0780.95Show/hide
Query:  IISSIVPVVPKNTRGASDFLFIPTGIASNAPATENTQVPSAL
        +I SIV VVPKNT GA DFLFIPT IA+NAPATENTQVP AL
Subjt:  IISSIVPVVPKNTRGASDFLFIPTGIASNAPATENTQVPSAL

KAG7031676.1 hypothetical protein SDJN02_05717, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-1391.49Show/hide
Query:  ALTPIIISSIVPVVPKNTRGASDFLFIPTGIASNAPATENTQVPSAL
        AL PI+ISSIVPVVPKNTRGA DFLFIPTGIASNAPATENTQVP+AL
Subjt:  ALTPIIISSIVPVVPKNTRGASDFLFIPTGIASNAPATENTQVPSAL

OMO62607.1 hypothetical protein CCACVL1_22724 [Corchorus capsularis]1.3e-1166.67Show/hide
Query:  VWKSMGRTSCIKALTPIIISSIVPVVPKNTRGASDFLFIPTGIASNAPATENTQVPSALWNAH
        +W+S    S  +AL PI+ISSIVPVVPKNTRGA+DF  IPTGIAS APATE T VP+AL   H
Subjt:  VWKSMGRTSCIKALTPIIISSIVPVVPKNTRGASDFLFIPTGIASNAPATENTQVPSALWNAH

TrEMBL top hitse value%identityAlignment
A0A0A9D4B1 Uncharacterized protein2.6e-0860Show/hide
Query:  RTSCIKA--LTPIIISSIVPVVPKNTRGASDFLFIPTGIASNAPATENTQVPSAL
        R++C ++  L P+++SS+VPVVPK T GA DF F+PTGIA+ APATE  QVP AL
Subjt:  RTSCIKA--LTPIIISSIVPVVPKNTRGASDFLFIPTGIASNAPATENTQVPSAL

A0A1R3GX32 Uncharacterized protein6.5e-1266.67Show/hide
Query:  VWKSMGRTSCIKALTPIIISSIVPVVPKNTRGASDFLFIPTGIASNAPATENTQVPSALWNAH
        +W+S    S  +AL PI+ISSIVPVVPKNTRGA+DF  IPTGIAS APATE T VP+AL   H
Subjt:  VWKSMGRTSCIKALTPIIISSIVPVVPKNTRGASDFLFIPTGIASNAPATENTQVPSALWNAH

A0A5N6RES6 Uncharacterized protein3.8e-1266.67Show/hide
Query:  VWKSMGRTSCIKALTPIIISSIVPVVPKNTRGASDFLFIPTGIASNAPATENTQVPSALW
        +W+S    S  +A+ P+IISS+VPVVPKNTRGA DF FIPTGIAS APATE T VP  LW
Subjt:  VWKSMGRTSCIKALTPIIISSIVPVVPKNTRGASDFLFIPTGIASNAPATENTQVPSALW

A0A7C9D2D2 Uncharacterized protein (Fragment)6.7e-0963.64Show/hide
Query:  SCIKALTPIIISSIVPVVPKNTRGASDFLFIPTGIASNAPATENTQVPSALWNAH
        S  +AL PI++SS+VPVVPK T GASDFL +PTGIA+ AP TE T VP AL   H
Subjt:  SCIKALTPIIISSIVPVVPKNTRGASDFLFIPTGIASNAPATENTQVPSALWNAH

A0A7J6HLW3 RNase H domain-containing protein1.7e-0780.95Show/hide
Query:  IISSIVPVVPKNTRGASDFLFIPTGIASNAPATENTQVPSAL
        +I SIV VVPKNT GA DFLFIPT IA+NAPATENTQVP AL
Subjt:  IISSIVPVVPKNTRGASDFLFIPTGIASNAPATENTQVPSAL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGGACATCTGAAATTCCTGAAGCAGATGGAGACTGATAGTTTTTCTTACGGGGGTGATATTAGAGTATGGAAGAGCATGGGGAGAACTTCGTGCATAAAGGCACT
GACTCCCATTATAATATCAAGCATTGTACCAGTTGTGCCAAAAAACACAAGGGGTGCCAGTGACTTCCTCTTTATTCCCACTGGAATTGCTAGCAACGCTCCTGCTACTG
AGAATACCCAAGTGCCCAGCGCACTGTGGAATGCCCACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATGGACATCTGAAATTCCTGAAGCAGATGGAGACTGATAGTTTTTCTTACGGGGGTGATATTAGAGTATGGAAGAGCATGGGGAGAACTTCGTGCATAAAGGCACT
GACTCCCATTATAATATCAAGCATTGTACCAGTTGTGCCAAAAAACACAAGGGGTGCCAGTGACTTCCTCTTTATTCCCACTGGAATTGCTAGCAACGCTCCTGCTACTG
AGAATACCCAAGTGCCCAGCGCACTGTGGAATGCCCACTAA
Protein sequenceShow/hide protein sequence
MDGHLKFLKQMETDSFSYGGDIRVWKSMGRTSCIKALTPIIISSIVPVVPKNTRGASDFLFIPTGIASNAPATENTQVPSALWNAH