; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmaCh09G010690 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh09G010690
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Descriptionribosome maturation protein SBDS
Genome locationCma_Chr09:5618308..5622252
RNA-Seq ExpressionCmaCh09G010690
SyntenyCmaCh09G010690
Gene Ontology termsGO:0042256 - mature ribosome assembly (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR002140 - Ribosome maturation protein Sdo1/SBDS
IPR003604 - Matrin/U1-C-like, C2H2-type zinc finger
IPR018023 - Ribosome maturation protein SBDS, conserved site
IPR018978 - Ribosome maturation protein Sdo1/SBDS, C-terminal
IPR019783 - Ribosome maturation protein Sdo1/SBDS, N-terminal
IPR036236 - Zinc finger C2H2 superfamily
IPR036786 - Ribosome maturation protein SBDS, N-terminal domain superfamily
IPR037188 - Ribosome maturation protein Sdo1/SBDS, central domain superfamily
IPR039100 - Ribosome maturation protein Sdo1/SBDS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6592159.1 Ribosome maturation protein SBDS, partial [Cucurbita argyrosperma subsp. sororia]1.7e-20198.89Show/hide
Query:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGK
        MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGK
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLDKLNSWSASII
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLDKLNSWSASII
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLDKLNSWSASII

Query:  SNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSFCLHEEGDTNVDQYDDDDFENVELPPRHVKESESAIPQLSEALQKQAISVDGGNTQKEGKR
        SNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSFCLHEEGDTNVDQYDDDDFENVELPPRHVK+SESAIPQLSEALQKQAISVDGGNT KEGKR
Subjt:  SNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSFCLHEEGDTNVDQYDDDDFENVELPPRHVKESESAIPQLSEALQKQAISVDGGNTQKEGKR

Query:  CSTCNVVVGDAIQFREHHKSEWHKHNIKRKTKNLPPLTEEECMVEIAIGDSESDLKEYSF
        CSTCNVVVGDAIQFREHHKSEWHKHN+KRKTKNLPPLTEEECMVEIA+GDSESDLKEYSF
Subjt:  CSTCNVVVGDAIQFREHHKSEWHKHNIKRKTKNLPPLTEEECMVEIAIGDSESDLKEYSF

XP_022936066.1 ribosome maturation protein SBDS [Cucurbita moschata]5.9e-20299.17Show/hide
Query:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGK
        MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGK
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLDKLNSWSASII
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLDKLNSWSASII
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLDKLNSWSASII

Query:  SNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSFCLHEEGDTNVDQYDDDDFENVELPPRHVKESESAIPQLSEALQKQAISVDGGNTQKEGKR
        SNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSFCLHEEGDTNVDQYDDDDFENVELPPRHVKESESAIPQLSEALQKQAISVDGGNT KEGKR
Subjt:  SNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSFCLHEEGDTNVDQYDDDDFENVELPPRHVKESESAIPQLSEALQKQAISVDGGNTQKEGKR

Query:  CSTCNVVVGDAIQFREHHKSEWHKHNIKRKTKNLPPLTEEECMVEIAIGDSESDLKEYSF
        CSTCNVVVGDAIQFREHHKSEWHKHN+KRKTKNLPPLTEEECMVEIA+GDSESDLKEYSF
Subjt:  CSTCNVVVGDAIQFREHHKSEWHKHNIKRKTKNLPPLTEEECMVEIAIGDSESDLKEYSF

XP_022975304.1 ribosome maturation protein SBDS [Cucurbita maxima]3.1e-203100Show/hide
Query:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGK
        MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGK
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLDKLNSWSASII
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLDKLNSWSASII
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLDKLNSWSASII

Query:  SNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSFCLHEEGDTNVDQYDDDDFENVELPPRHVKESESAIPQLSEALQKQAISVDGGNTQKEGKR
        SNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSFCLHEEGDTNVDQYDDDDFENVELPPRHVKESESAIPQLSEALQKQAISVDGGNTQKEGKR
Subjt:  SNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSFCLHEEGDTNVDQYDDDDFENVELPPRHVKESESAIPQLSEALQKQAISVDGGNTQKEGKR

Query:  CSTCNVVVGDAIQFREHHKSEWHKHNIKRKTKNLPPLTEEECMVEIAIGDSESDLKEYSF
        CSTCNVVVGDAIQFREHHKSEWHKHNIKRKTKNLPPLTEEECMVEIAIGDSESDLKEYSF
Subjt:  CSTCNVVVGDAIQFREHHKSEWHKHNIKRKTKNLPPLTEEECMVEIAIGDSESDLKEYSF

XP_023535044.1 ribosome maturation protein SBDS [Cucurbita pepo subsp. pepo]8.5e-20198.33Show/hide
Query:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGK
        MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGK
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLDKLNSWSASII
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLDKLN+WSASII
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLDKLNSWSASII

Query:  SNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSFCLHEEGDTNVDQYDDDDFENVELPPRHVKESESAIPQLSEALQKQAISVDGGNTQKEGKR
        SND SGNQQRS+ICELDPSFYRDCNPLMSELQGKFEVLSFCLHEEGDTNVDQYDDDDFENVELPPRHVKESESAIPQLSEALQKQAISVDGGNT KEGKR
Subjt:  SNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSFCLHEEGDTNVDQYDDDDFENVELPPRHVKESESAIPQLSEALQKQAISVDGGNTQKEGKR

Query:  CSTCNVVVGDAIQFREHHKSEWHKHNIKRKTKNLPPLTEEECMVEIAIGDSESDLKEYSF
        CSTCNVVVGDAIQFREHHKSEWHKHN+KRKTKNLPPLTEEECMVEIA+GDSESDLKEYSF
Subjt:  CSTCNVVVGDAIQFREHHKSEWHKHNIKRKTKNLPPLTEEECMVEIAIGDSESDLKEYSF

XP_038886377.1 ribosome maturation protein SBDS [Benincasa hispida]3.6e-19193.89Show/hide
Query:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGK
        MSRSLVQPIGQKRLTNVAVVRLK+HGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQ EICLKILKEGELQIAGK
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLDKLNSWSASII
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRY VPEQNFPSLLDKLN+WSASII
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLDKLNSWSASII

Query:  SNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSFCLHEEGDTNVDQYDDDDFENVELPPRHVKESESAIPQLSEALQKQAISVDGGNTQKEGKR
        SNDQSGNQQRS+ICELDPSFYRDCNPLMSELQG+FEVLSFCLHEEGDTNVDQY DDD+ENVELPPR VKESESAIPQL+EALQKQ ISV+  N  KEGKR
Subjt:  SNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSFCLHEEGDTNVDQYDDDDFENVELPPRHVKESESAIPQLSEALQKQAISVDGGNTQKEGKR

Query:  CSTCNVVVGDAIQFREHHKSEWHKHNIKRKTKNLPPLTEEECMVEIAIGDSESDLKEYSF
        CSTCNVVVGDA QFREHHKSEWHKHN+KRKTKNLPPLTEEEC VE+A+GD+ESDLKEYSF
Subjt:  CSTCNVVVGDAIQFREHHKSEWHKHNIKRKTKNLPPLTEEECMVEIAIGDSESDLKEYSF

TrEMBL top hitse value%identityAlignment
A0A1S3CRW0 ribosome maturation protein SBDS1.4e-18590.56Show/hide
Query:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGK
        MSRSLVQPIGQKRLTNVAVVRLK+HGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAF TDDQ EICLKILKEGELQ+AGK
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLDKLNSWSASII
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMR+RY VPEQN PSLLDKLN+WSASI+
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLDKLNSWSASII

Query:  SNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSFCLHEEGDTNVDQYDDDDFENVELPPRHVKESESAIPQLSEALQKQAISVDGGNTQKEGKR
        SNDQSGNQQRS+ICELDPSFYRDCNPLMSEL G+FEVLSFCLHEEGDTNVDQY +DD+ENVEL PR +KE+ES+IPQLSEALQKQ ISV+  N  KEGKR
Subjt:  SNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSFCLHEEGDTNVDQYDDDDFENVELPPRHVKESESAIPQLSEALQKQAISVDGGNTQKEGKR

Query:  CSTCNVVVGDAIQFREHHKSEWHKHNIKRKTKNLPPLTEEECMVEIAIGDSESDLKEYSF
        CSTCNV VGDA +FREHHKS+WHKHN+KRKTKNLPPLTEEEC VE+A+GDSESDLKEYSF
Subjt:  CSTCNVVVGDAIQFREHHKSEWHKHNIKRKTKNLPPLTEEECMVEIAIGDSESDLKEYSF

A0A5A7UXA4 Ribosome maturation protein SBDS1.4e-18590.56Show/hide
Query:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGK
        MSRSLVQPIGQKRLTNVAVVRLK+HGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAF TDDQ EICLKILKEGELQ+AGK
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLDKLNSWSASII
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMR+RY VPEQN PSLLDKLN+WSASI+
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLDKLNSWSASII

Query:  SNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSFCLHEEGDTNVDQYDDDDFENVELPPRHVKESESAIPQLSEALQKQAISVDGGNTQKEGKR
        SNDQSGNQQRS+ICELDPSFYRDCNPLMSEL G+FEVLSFCLHEEGDTNVDQY +DD+ENVEL PR +KE+ES+IPQLSEALQKQ ISV+  N  KEGKR
Subjt:  SNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSFCLHEEGDTNVDQYDDDDFENVELPPRHVKESESAIPQLSEALQKQAISVDGGNTQKEGKR

Query:  CSTCNVVVGDAIQFREHHKSEWHKHNIKRKTKNLPPLTEEECMVEIAIGDSESDLKEYSF
        CSTCNV VGDA +FREHHKS+WHKHN+KRKTKNLPPLTEEEC VE+A+GDSESDLKEYSF
Subjt:  CSTCNVVVGDAIQFREHHKSEWHKHNIKRKTKNLPPLTEEECMVEIAIGDSESDLKEYSF

A0A6J1DHK8 ribosome maturation protein SBDS2.0e-18491.11Show/hide
Query:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGK
        MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQ  ICLKILKEGELQIA K
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLDKLNSWSASII
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFA+DPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLL+KLN+W+AS +
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLDKLNSWSASII

Query:  SNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSFCLHEEGDTNVDQYDDDDFENVELPPRHVKESESAIPQLSEALQKQAISVDGGNTQKEGKR
        SNDQSG+QQRSVICELDPSFYRDCNPLMSELQG+FEVLSFCLHEEGDTNVDQY DDDF+N ELPPR VK  ES IPQLSEALQ+Q ISV+G N  KEGKR
Subjt:  SNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSFCLHEEGDTNVDQYDDDDFENVELPPRHVKESESAIPQLSEALQKQAISVDGGNTQKEGKR

Query:  CSTCNVVVGDAIQFREHHKSEWHKHNIKRKTKNLPPLTEEECMVEIAIGDSESDLKEYSF
        CSTCNV VGDA QFREHHK EWHKHN+KRKTKNLPPLTEEECMVE+A+G+SESDLK+YSF
Subjt:  CSTCNVVVGDAIQFREHHKSEWHKHNIKRKTKNLPPLTEEECMVEIAIGDSESDLKEYSF

A0A6J1F6G6 ribosome maturation protein SBDS2.8e-20299.17Show/hide
Query:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGK
        MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGK
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLDKLNSWSASII
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLDKLNSWSASII
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLDKLNSWSASII

Query:  SNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSFCLHEEGDTNVDQYDDDDFENVELPPRHVKESESAIPQLSEALQKQAISVDGGNTQKEGKR
        SNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSFCLHEEGDTNVDQYDDDDFENVELPPRHVKESESAIPQLSEALQKQAISVDGGNT KEGKR
Subjt:  SNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSFCLHEEGDTNVDQYDDDDFENVELPPRHVKESESAIPQLSEALQKQAISVDGGNTQKEGKR

Query:  CSTCNVVVGDAIQFREHHKSEWHKHNIKRKTKNLPPLTEEECMVEIAIGDSESDLKEYSF
        CSTCNVVVGDAIQFREHHKSEWHKHN+KRKTKNLPPLTEEECMVEIA+GDSESDLKEYSF
Subjt:  CSTCNVVVGDAIQFREHHKSEWHKHNIKRKTKNLPPLTEEECMVEIAIGDSESDLKEYSF

A0A6J1IK36 ribosome maturation protein SBDS1.5e-203100Show/hide
Query:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGK
        MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGK
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLDKLNSWSASII
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLDKLNSWSASII
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLDKLNSWSASII

Query:  SNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSFCLHEEGDTNVDQYDDDDFENVELPPRHVKESESAIPQLSEALQKQAISVDGGNTQKEGKR
        SNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSFCLHEEGDTNVDQYDDDDFENVELPPRHVKESESAIPQLSEALQKQAISVDGGNTQKEGKR
Subjt:  SNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSFCLHEEGDTNVDQYDDDDFENVELPPRHVKESESAIPQLSEALQKQAISVDGGNTQKEGKR

Query:  CSTCNVVVGDAIQFREHHKSEWHKHNIKRKTKNLPPLTEEECMVEIAIGDSESDLKEYSF
        CSTCNVVVGDAIQFREHHKSEWHKHNIKRKTKNLPPLTEEECMVEIAIGDSESDLKEYSF
Subjt:  CSTCNVVVGDAIQFREHHKSEWHKHNIKRKTKNLPPLTEEECMVEIAIGDSESDLKEYSF

SwissProt top hitse value%identityAlignment
P70122 Ribosome maturation protein SBDS1.4e-6553.85Show/hide
Query:  SLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKERE
        S+  P  Q RLTNVAVVR+KR G RFEIACYKNKV+ WRSGVEKDLDEVLQ+  V+ NVSKG +AK +DL +AF TDDQ EIC +IL +GE+Q++ KER 
Subjt:  SLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKERE

Query:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLDKLNSWSASIISND
         QL   FRDIATIV  K  NPETKRPYT+ +IER M++IH++V PN S+K+QALEVI +L+++  I+R+ MR+R+ +P      L +KL      + S D
Subjt:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLDKLNSWSASIISND

Query:  QSGNQQRSVICELDPSFYRDCNPLM---SELQGKFEVLSFCLHEEGD
         S  QQ  ++C +DP  +R+ + L+   ++ +G  EVLS    EEGD
Subjt:  QSGNQQRSVICELDPSFYRDCNPLM---SELQGKFEVLSFCLHEEGD

Q3SWZ6 Ribosome maturation protein SBDS4.1e-6553.85Show/hide
Query:  SLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKERE
        S+  P  Q RLTNVAVVR+KR G RFEIACYKNKV+ WRSGVEKDLDEVLQ+  V+ NVSKG +AK +DL +AF TDDQ EIC +IL +GE+Q++ KER 
Subjt:  SLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKERE

Query:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLDKLNSWSASIISND
         QL   FRDIATIV  K  NPETKRPYT+ +IER M++IH++V PN S+K+QALEVI +L+++  I+R+ MR+R+ +P      L +KL      I S D
Subjt:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLDKLNSWSASIISND

Query:  QSGNQQRSVICELDPSFYRDCNPLM---SELQGKFEVLSFCLHEEGD
            QQ  ++C +DP  +R+ + L+   ++ +G  EVLS    EEGD
Subjt:  QSGNQQRSVICELDPSFYRDCNPLM---SELQGKFEVLSFCLHEEGD

Q5RAZ2 Ribosome maturation protein SBDS7.8e-6453.04Show/hide
Query:  SLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKERE
        S+  P  Q RLTNVAVVR+KR G RFEIACYKNKV+ WRSGVEKDLDEVLQ+  V+ NVSKG +AK +DL +AF TDDQ EIC +IL +GE+Q++ KER 
Subjt:  SLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKERE

Query:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLDKLNSWSASIISND
         QL   FRDIATIV  K  NPETKRPYT+ +IER M++IH++V  N S+K+QALEVI +L+++  I+R+ MR+R+ +P      L +KL      I S D
Subjt:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLDKLNSWSASIISND

Query:  QSGNQQRSVICELDPSFYRDCNPLM---SELQGKFEVLSFCLHEEGD
            QQ  ++C +DP  +R+ + L+   ++ +G  EVL+    EEGD
Subjt:  QSGNQQRSVICELDPSFYRDCNPLM---SELQGKFEVLSFCLHEEGD

Q5RK30 Ribosome maturation protein SBDS1.4e-6553.85Show/hide
Query:  SLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKERE
        S+  P  Q RLTNVAVVR+KR G RFEIACYKNKV+ WRSGVEKDLDEVLQ+  V+ NVSKG +AK +DL +AF TDDQ EIC +IL +GE+Q++ KER 
Subjt:  SLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKERE

Query:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLDKLNSWSASIISND
         QL   FRDIATIV  K  NPETKRPYT+ +IER M++IH++V PN S+K+QALEVI +L+++  I+R+ MR+R+ +P      L +KL      + S D
Subjt:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLDKLNSWSASIISND

Query:  QSGNQQRSVICELDPSFYRDCNPLM---SELQGKFEVLSFCLHEEGD
         S  QQ  ++C +DP  +R+ + L+   ++ +G  EVLS    EEGD
Subjt:  QSGNQQRSVICELDPSFYRDCNPLM---SELQGKFEVLSFCLHEEGD

Q9Y3A5 Ribosome maturation protein SBDS7.8e-6453.04Show/hide
Query:  SLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKERE
        S+  P  Q RLTNVAVVR+KR G RFEIACYKNKV+ WRSGVEKDLDEVLQ+  V+ NVSKG +AK +DL +AF TDDQ EIC +IL +GE+Q++ KER 
Subjt:  SLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKERE

Query:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLDKLNSWSASIISND
         QL   FRDIATIV  K  NPETKRPYT+ +IER M++IH++V  N S+K+QALEVI +L+++  I+R+ MR+R+ +P      L +KL      I S D
Subjt:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLDKLNSWSASIISND

Query:  QSGNQQRSVICELDPSFYRDCNPLM---SELQGKFEVLSFCLHEEGD
            QQ  ++C +DP  +R+ + L+   ++ +G  EVL+    EEGD
Subjt:  QSGNQQRSVICELDPSFYRDCNPLM---SELQGKFEVLSFCLHEEGD

Arabidopsis top hitse value%identityAlignment
AT1G43860.1 sequence-specific DNA binding transcription factors2.6e-13162.26Show/hide
Query:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGK
        MS++LVQP+GQKRLTNVAVVRLK+ G RFEIACYKNKVLSWRSGVEKD+DEVLQS  VYSNVSKGVLAK+KDL  +F +DD  +IC+ IL++GELQ+AGK
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLDKLNSWSASII
        ERE+Q S+QFRDIATIVMQKT NPET+RPYTISM+ERLM EIHFAVDP+ +SKKQAL+VI ELQK FPIKRSPMR+R TVP QNFPSLL+KL  W  S++
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLDKLNSWSASII

Query:  SNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSFCLHEEGDTNVDQYDDDDFENVE-----LPPR-HVKESESAIPQLSEALQKQAISV-----
        S D+SG Q  S +CE++P  +R+C+  +  +QG+ E+L+  +H EGDT++D YD+ D   ++     LP     K+    + +LS+ LQKQ IS      
Subjt:  SNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSFCLHEEGDTNVDQYDDDDFENVE-----LPPR-HVKESESAIPQLSEALQKQAISV-----

Query:  DGGNTQKEGKRCSTCNVVVGDAIQFREHHKSEWHKHNIKRKTKNLPPLTEEECMVEIAIGDSESDLKEYSF
          G  +K+G +CSTCN  VG+A Q+REH KS+WHKHN+KRKT+ LPP++ +ECM EI + DS +DLK+YSF
Subjt:  DGGNTQKEGKRCSTCNVVVGDAIQFREHHKSEWHKHNIKRKTKNLPPLTEEECMVEIAIGDSESDLKEYSF

AT2G24500.1 Zinc finger protein 6221.1e-0442.86Show/hide
Query:  GKRCSTCNVVVGDAIQFREHHKSEWHKHNIKRKTKNLPPLTE
        G  C++CN    D  + + H+KSEWH++N+KRK   +P +TE
Subjt:  GKRCSTCNVVVGDAIQFREHHKSEWHKHNIKRKTKNLPPLTE

AT4G31420.1 Zinc finger protein 6221.9e-0440.48Show/hide
Query:  GKRCSTCNVVVGDAIQFREHHKSEWHKHNIKRKTKNLPPLTE
        G  C+ CN+   D  +   H+KS+WH++N+KRK   +P +TE
Subjt:  GKRCSTCNVVVGDAIQFREHHKSEWHKHNIKRKTKNLPPLTE

AT4G31420.2 Zinc finger protein 6221.9e-0440.48Show/hide
Query:  GKRCSTCNVVVGDAIQFREHHKSEWHKHNIKRKTKNLPPLTE
        G  C+ CN+   D  +   H+KS+WH++N+KRK   +P +TE
Subjt:  GKRCSTCNVVVGDAIQFREHHKSEWHKHNIKRKTKNLPPLTE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACGATCGCTGGTGCAGCCGATCGGGCAGAAGAGGCTGACGAACGTGGCGGTTGTTCGTTTGAAGAGACACGGTCTGCGCTTTGAGATCGCTTGTTACAAGAACAA
GGTCCTTTCTTGGCGCTCTGGCGTGGAGAAAGATTTAGATGAGGTCTTGCAATCGCAAATTGTTTATTCAAATGTTTCGAAAGGAGTTCTTGCAAAAACCAAAGATTTAA
AAGCAGCTTTTGATACAGATGATCAGGCGGAAATTTGTTTGAAGATTCTTAAAGAAGGGGAACTTCAAATTGCAGGGAAGGAGAGGGAGGCTCAATTATCTAATCAGTTT
CGTGATATTGCAACCATTGTTATGCAGAAGACCTTCAATCCTGAAACTAAACGCCCTTACACGATTAGTATGATTGAGCGACTCATGCGCGAAATTCATTTTGCTGTTGA
TCCAAATCACAGCTCAAAGAAACAGGCATTAGAGGTCATTCATGAGCTTCAGAAACAGTTCCCAATTAAACGTTCGCCTATGAGAATACGATATACTGTACCTGAACAGA
ACTTTCCATCTCTCCTTGATAAGTTGAATTCCTGGAGTGCTAGTATCATTTCCAATGATCAGTCTGGAAATCAGCAACGAAGTGTTATTTGTGAATTGGATCCTAGCTTT
TATCGAGATTGTAATCCTTTAATGAGCGAACTGCAAGGCAAATTTGAAGTTCTCTCTTTCTGTTTGCACGAGGAAGGGGACACCAATGTGGATCAATACGACGATGACGA
TTTTGAGAATGTGGAGCTGCCACCCCGACACGTCAAGGAATCAGAATCAGCTATTCCTCAGCTAAGTGAGGCTTTACAAAAACAGGCAATCTCTGTTGATGGCGGGAATA
CCCAAAAGGAAGGAAAACGCTGCAGCACATGCAACGTAGTCGTGGGGGATGCTATTCAGTTTAGAGAGCATCACAAGAGTGAATGGCATAAGCATAACATCAAGCGCAAA
ACCAAAAATCTCCCTCCTTTAACCGAAGAAGAGTGCATGGTAGAAATAGCTATAGGCGACTCTGAGTCCGACCTGAAGGAGTACTCATTTTGA
mRNA sequenceShow/hide mRNA sequence
TTATAAGCTCGAGGGGCGAAGCTTCGTCCAAAATCAGTATTATCATCGGCTTCTCCATTCTTATTCCAATCGGCAAAGTTTGCGAAGGCGTTTGAGCGAAGATGTCACGA
TCGCTGGTGCAGCCGATCGGGCAGAAGAGGCTGACGAACGTGGCGGTTGTTCGTTTGAAGAGACACGGTCTGCGCTTTGAGATCGCTTGTTACAAGAACAAGGTCCTTTC
TTGGCGCTCTGGCGTGGAGAAAGATTTAGATGAGGTCTTGCAATCGCAAATTGTTTATTCAAATGTTTCGAAAGGAGTTCTTGCAAAAACCAAAGATTTAAAAGCAGCTT
TTGATACAGATGATCAGGCGGAAATTTGTTTGAAGATTCTTAAAGAAGGGGAACTTCAAATTGCAGGGAAGGAGAGGGAGGCTCAATTATCTAATCAGTTTCGTGATATT
GCAACCATTGTTATGCAGAAGACCTTCAATCCTGAAACTAAACGCCCTTACACGATTAGTATGATTGAGCGACTCATGCGCGAAATTCATTTTGCTGTTGATCCAAATCA
CAGCTCAAAGAAACAGGCATTAGAGGTCATTCATGAGCTTCAGAAACAGTTCCCAATTAAACGTTCGCCTATGAGAATACGATATACTGTACCTGAACAGAACTTTCCAT
CTCTCCTTGATAAGTTGAATTCCTGGAGTGCTAGTATCATTTCCAATGATCAGTCTGGAAATCAGCAACGAAGTGTTATTTGTGAATTGGATCCTAGCTTTTATCGAGAT
TGTAATCCTTTAATGAGCGAACTGCAAGGCAAATTTGAAGTTCTCTCTTTCTGTTTGCACGAGGAAGGGGACACCAATGTGGATCAATACGACGATGACGATTTTGAGAA
TGTGGAGCTGCCACCCCGACACGTCAAGGAATCAGAATCAGCTATTCCTCAGCTAAGTGAGGCTTTACAAAAACAGGCAATCTCTGTTGATGGCGGGAATACCCAAAAGG
AAGGAAAACGCTGCAGCACATGCAACGTAGTCGTGGGGGATGCTATTCAGTTTAGAGAGCATCACAAGAGTGAATGGCATAAGCATAACATCAAGCGCAAAACCAAAAAT
CTCCCTCCTTTAACCGAAGAAGAGTGCATGGTAGAAATAGCTATAGGCGACTCTGAGTCCGACCTGAAGGAGTACTCATTTTGA
Protein sequenceShow/hide protein sequence
MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKEREAQLSNQF
RDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLDKLNSWSASIISNDQSGNQQRSVICELDPSF
YRDCNPLMSELQGKFEVLSFCLHEEGDTNVDQYDDDDFENVELPPRHVKESESAIPQLSEALQKQAISVDGGNTQKEGKRCSTCNVVVGDAIQFREHHKSEWHKHNIKRK
TKNLPPLTEEECMVEIAIGDSESDLKEYSF