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CmaCh09G012940 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh09G012940
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description50S ribosomal protein L16, chloroplastic
Genome locationCma_Chr09:8969913..8973227
RNA-Seq ExpressionCmaCh09G012940
SyntenyCmaCh09G012940
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0001671 - ATPase activator activity (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
GO:0051087 - chaperone binding (molecular function)
GO:0051879 - Hsp90 protein binding (molecular function)
InterPro domainsIPR000114 - Ribosomal protein L16
IPR020798 - Ribosomal protein L16, conserved site
IPR036920 - Ribosomal protein L10e/L16 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7033508.1 hypothetical protein SDJN02_03230, partial [Cucurbita argyrosperma subsp. argyrosperma]2.0e-1450.77Show/hide
Query:  ALASARICLTYEEGLSLSDDAALALVRIFLTLRSRRGNLEQGTK-TMLKPEESPHWAKEPILARRAVGRVASSGEEANFGRKGGGNLSMTKGDLEVNRVE
        +LASARICLTYEEG SL+DDAAL L           G +E+  K TML  E+S        +    VG                   SMT GDLEV RVE
Subjt:  ALASARICLTYEEGLSLSDDAALALVRIFLTLRSRRGNLEQGTK-TMLKPEESPHWAKEPILARRAVGRVASSGEEANFGRKGGGNLSMTKGDLEVNRVE

Query:  PKSNQSAPTTAAMKTAPAASKPAGVVEKKI
        PKSN+SAP  AAM TAPAASKP GVVEKK+
Subjt:  PKSNQSAPTTAAMKTAPAASKPAGVVEKKI

XP_022929273.1 uncharacterized protein LOC111435904 [Cucurbita moschata]1.3e-0568.75Show/hide
Query:  SMTKGDLEVNRVEPKSNQSAPTTAAMKTAPAASKPAGVVEKKIRGFKS
        +M K DLEV RVEPKSNQSAP  AA+KTAP ASKPA VVEKK +  ++
Subjt:  SMTKGDLEVNRVEPKSNQSAPTTAAMKTAPAASKPAGVVEKKIRGFKS

XP_022987469.1 uncharacterized protein LOC111485008 [Cucurbita maxima]1.7e-0570Show/hide
Query:  SMTKGDLEVNRVEPKSNQSAPTTAAMKTAPAASKPAGVVEKKI-RGFKSH
        S++KGDLEV +VE KSNQ AP T  M+TAPAASK A VVEKK+  GFKSH
Subjt:  SMTKGDLEVNRVEPKSNQSAPTTAAMKTAPAASKPAGVVEKKI-RGFKSH

XP_023536184.1 uncharacterized protein LOC111797429 [Cucurbita pepo subsp. pepo]1.2e-1442.58Show/hide
Query:  VAVVKPEGSPLSGDVALASARICLTYEEGLSLSDDAALA-----LVRIFLTLRSRRGNLEQGTKTMLKPEESPHWAKEPILARRAVGRVASSGEEANFGR
        +++   EGS LS D ALA  RICLT+EEG SLSDD ALA     L+ I L +     N +   +  +  E          + ++  G +   G+      
Subjt:  VAVVKPEGSPLSGDVALASARICLTYEEGLSLSDDAALA-----LVRIFLTLRSRRGNLEQGTKTMLKPEESPHWAKEPILARRAVGRVASSGEEANFGR

Query:  KGGGNLSMTKGDLEVNRVEPKSNQSAPTTAAMKTAPAASKPAGVVEKKIRGFKSH
              SM  GDLEVNRVE KSNQSA   AAM TAP ASKP   V+K  RGF+SH
Subjt:  KGGGNLSMTKGDLEVNRVEPKSNQSAPTTAAMKTAPAASKPAGVVEKKIRGFKSH

TrEMBL top hitse value%identityAlignment
A0A6J1ERL2 uncharacterized protein LOC1114359046.3e-0668.75Show/hide
Query:  SMTKGDLEVNRVEPKSNQSAPTTAAMKTAPAASKPAGVVEKKIRGFKS
        +M K DLEV RVEPKSNQSAP  AA+KTAP ASKPA VVEKK +  ++
Subjt:  SMTKGDLEVNRVEPKSNQSAPTTAAMKTAPAASKPAGVVEKKIRGFKS

A0A6J1G413 activator of 90 kDa heat shock protein ATPase homolog5.9e-0468.09Show/hide
Query:  KGDLEVNRVEPKSNQSAPTTAAMKTAPAASKPAGVVEKK--IRGFKS
        K DLE  +VEPKSNQSAP  AAM  APAASKPA V EKK   +GFK+
Subjt:  KGDLEVNRVEPKSNQSAPTTAAMKTAPAASKPAGVVEKK--IRGFKS

A0A6J1I5H1 activator of 90 kDa heat shock protein ATPase homolog5.9e-0468.09Show/hide
Query:  KGDLEVNRVEPKSNQSAPTTAAMKTAPAASKPAGVVEKK--IRGFKS
        K DLE  +VEPKSNQSAP  AAM  APAASKPA V EKK   +GFK+
Subjt:  KGDLEVNRVEPKSNQSAPTTAAMKTAPAASKPAGVVEKK--IRGFKS

A0A6J1JIZ6 uncharacterized protein LOC1114850088.3e-0670Show/hide
Query:  SMTKGDLEVNRVEPKSNQSAPTTAAMKTAPAASKPAGVVEKKI-RGFKSH
        S++KGDLEV +VE KSNQ AP T  M+TAPAASK A VVEKK+  GFKSH
Subjt:  SMTKGDLEVNRVEPKSNQSAPTTAAMKTAPAASKPAGVVEKKI-RGFKSH

SwissProt top hitse value%identityAlignment
A2T371 50S ribosomal protein L16, chloroplastic3.3e-0457.45Show/hide
Query:  IGRRSQXTRMGSGKGSPEYWVAVVKP-----EGSPLSGDVALASARI
        I  R   TRMGSGKGSPEYWV+VVKP     E S +S +VA A+ +I
Subjt:  IGRRSQXTRMGSGKGSPEYWVAVVKP-----EGSPLSGDVALASARI

O98456 50S ribosomal protein L16, chloroplastic2.0e-0457.45Show/hide
Query:  IGRRSQXTRMGSGKGSPEYWVAVVKP-----EGSPLSGDVALASARI
        I  R   TRMGSGKG+PEYWVAVVKP     E S +S  +A A+ RI
Subjt:  IGRRSQXTRMGSGKGSPEYWVAVVKP-----EGSPLSGDVALASARI

P06383 50S ribosomal protein L16, chloroplastic2.6e-0459.09Show/hide
Query:  RSQXTRMGSGKGSPEYWVAVVKP-----EGSPLSGDVALASARI
        R   TRMGSGKGSPEYWVAVVKP     E S +S ++A A+ +I
Subjt:  RSQXTRMGSGKGSPEYWVAVVKP-----EGSPLSGDVALASARI

Q32RN5 50S ribosomal protein L16, chloroplastic1.2e-0459.57Show/hide
Query:  IGRRSQXTRMGSGKGSPEYWVAVVKP-----EGSPLSGDVALASARI
        I  R   TRMGSGKGSPEYWVAVVKP     E S +S  +A A+ RI
Subjt:  IGRRSQXTRMGSGKGSPEYWVAVVKP-----EGSPLSGDVALASARI

Q85WS6 50S ribosomal protein L16, chloroplastic2.0e-0457.45Show/hide
Query:  IGRRSQXTRMGSGKGSPEYWVAVVKP-----EGSPLSGDVALASARI
        I  R   TRMGSGKGSPEYWV+V+KP     E   +S  VA A+ARI
Subjt:  IGRRSQXTRMGSGKGSPEYWVAVVKP-----EGSPLSGDVALASARI

Arabidopsis top hitse value%identityAlignment
ATCG00790.1 ribosomal protein L169.0e-0586.96Show/hide
Query:  RSQXTRMGSGKGSPEYWVAVVKP
        R   TRMGSGKGSPEYWVAVVKP
Subjt:  RSQXTRMGSGKGSPEYWVAVVKP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGAGGGATCGCCGCTCAGCGGCGATGTTGCCTTGGCTTCGGCGAGAATATGTCTAACCTA
TGAAGAGGGATTGTCGCTTAGCGACGATGCTGCCTTGGCTCTGGGCAGTCGGAAGAGTCGCCTCATCGGGCGAAGAAGCCAANAAACACGTATGGGTTCAGGGAAAGGAT
CCCCCGAATATTGGGTAGCTGTTGTTAAACCAGAGGGATCGCCGCTCAGCGGCGATGTTGCCTTGGCTTCGGCGAGAATATGTCTAACCTATGAAGAGGGATTGTCGCTT
AGCGACGATGCTGCCTTGGCTCTGGTGAGAATATTTCTAACCCTAAGAAGTAGAAGGGGAAACTTAGAGCAAGGGACAAAGACAATGTTGAAGCCGGAAGAGTCGCCACA
TTGGGCGAAGGAGCCAATTTTGGCGAGAAGGGCAGTCGGAAGAGTCGCCTCATCGGGCGAAGAAGCCAATTTTGGCAGGAAGGGCGGCGGCAACTTGAGTATGACGAAAG
GTGATTTGGAGGTCAATAGGGTGGAGCCGAAGAGTAATCAATCGGCTCCGACTACGGCAGCCATGAAGACTGCCCCTGCGGCGTCAAAACCAGCAGGGGTGGTGGAGAAG
AAGATTAGAGGATTCAAAAGCCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGAGGGATCGCCGCTCAGCGGCGATGTTGCCTTGGCTTCGGCGAGAATATGTCTAACCTA
TGAAGAGGGATTGTCGCTTAGCGACGATGCTGCCTTGGCTCTGGGCAGTCGGAAGAGTCGCCTCATCGGGCGAAGAAGCCAANAAACACGTATGGGTTCAGGGAAAGGAT
CCCCCGAATATTGGGTAGCTGTTGTTAAACCAGAGGGATCGCCGCTCAGCGGCGATGTTGCCTTGGCTTCGGCGAGAATATGTCTAACCTATGAAGAGGGATTGTCGCTT
AGCGACGATGCTGCCTTGGCTCTGGTGAGAATATTTCTAACCCTAAGAAGTAGAAGGGGAAACTTAGAGCAAGGGACAAAGACAATGTTGAAGCCGGAAGAGTCGCCACA
TTGGGCGAAGGAGCCAATTTTGGCGAGAAGGGCAGTCGGAAGAGTCGCCTCATCGGGCGAAGAAGCCAATTTTGGCAGGAAGGGCGGCGGCAACTTGAGTATGACGAAAG
GTGATTTGGAGGTCAATAGGGTGGAGCCGAAGAGTAATCAATCGGCTCCGACTACGGCAGCCATGAAGACTGCCCCTGCGGCGTCAAAACCAGCAGGGGTGGTGGAGAAG
AAGATTAGAGGATTCAAAAGCCATTGA
Protein sequenceShow/hide protein sequence
MGSGKGSPEYWVAVVKPEGSPLSGDVALASARICLTYEEGLSLSDDAALALGSRKSRLIGRRSQXTRMGSGKGSPEYWVAVVKPEGSPLSGDVALASARICLTYEEGLSL
SDDAALALVRIFLTLRSRRGNLEQGTKTMLKPEESPHWAKEPILARRAVGRVASSGEEANFGRKGGGNLSMTKGDLEVNRVEPKSNQSAPTTAAMKTAPAASKPAGVVEK
KIRGFKSH