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CmaCh09G013080 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh09G013080
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Descriptionsuccinate dehydrogenase assembly factor 1, mitochondrial-like
Genome locationCma_Chr09:9131467..9134407
RNA-Seq ExpressionCmaCh09G013080
SyntenyCmaCh09G013080
Gene Ontology termsGO:0034553 - mitochondrial respiratory chain complex II assembly (biological process)
GO:0044237 - cellular metabolic process (biological process)
GO:0005739 - mitochondrion (cellular component)
InterPro domainsIPR008011 - Complex 1 LYR protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6592356.1 hypothetical protein SDJN03_14702, partial [Cucurbita argyrosperma subsp. sororia]3.9e-2876.7Show/hide
Query:  MGISSGPKLSGLQKQVLSLYRAFLRAARSKSAEDRRQMESIVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKSVVE----SLKCLKMRTMDFSSF
        MGISSGPKLSGLQKQVLSLYRAFLRAARSKS EDRRQMES+VAAEFRRNAKQIDRKNFIHIEYLLRRA + F +QF   V+      + LK     FSSF
Subjt:  MGISSGPKLSGLQKQVLSLYRAFLRAARSKSAEDRRQMESIVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKSVVE----SLKCLKMRTMDFSSF

Query:  VRL
        VRL
Subjt:  VRL
KAG7025171.1 SDH6-3, partial [Cucurbita argyrosperma subsp. argyrosperma]2.3e-2897.3Show/hide
Query:  LSGLQKQVLSLYRAFLRAARSKSAEDRRQMESIVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKSVVES
        LSGLQKQVLSLYRAFLRAARSKS EDRRQMES+VAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKSVVES
Subjt:  LSGLQKQVLSLYRAFLRAARSKSAEDRRQMESIVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKSVVES
XP_022925400.1 succinate dehydrogenase assembly factor 1, mitochondrial-like [Cucurbita moschata]7.7e-4092.93Show/hide
Query:  MGISSGPKLSGLQKQVLSLYRAFLRAARSKSAEDRRQMESIVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKSVVESLKCLKMRTMDFSSFVRL
        MGISSGPKLSGLQKQVLSLYR+FLRAARSKSAEDRRQMES+VAAEFRRNAKQIDRKNFIHIEYLLRR TINF +Q KSVVESLKCLKM TMDFSSFVRL
Subjt:  MGISSGPKLSGLQKQVLSLYRAFLRAARSKSAEDRRQMESIVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKSVVESLKCLKMRTMDFSSFVRL
XP_022973474.1 succinate dehydrogenase assembly factor 1, mitochondrial-like [Cucurbita maxima]1.5e-43100Show/hide
Query:  MGISSGPKLSGLQKQVLSLYRAFLRAARSKSAEDRRQMESIVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKSVVESLKCLKMRTMDFSSFVRL
        MGISSGPKLSGLQKQVLSLYRAFLRAARSKSAEDRRQMESIVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKSVVESLKCLKMRTMDFSSFVRL
Subjt:  MGISSGPKLSGLQKQVLSLYRAFLRAARSKSAEDRRQMESIVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKSVVESLKCLKMRTMDFSSFVRL
XP_023525064.1 succinate dehydrogenase assembly factor 1, mitochondrial [Cucurbita pepo subsp. pepo]1.6e-2186.57Show/hide
Query:  MGISSGPKLSGLQKQVLSLYRAFLRAARSKSAEDRRQMESIVAAEFRRNAKQIDRKNFIHIEYLLRR
        MG+SS PKLSG+Q+QVLSLYRAFLRAARSKSAEDRRQ+ES+V+AEFRRNAK IDRKNFI+IEYLLRR
Subjt:  MGISSGPKLSGLQKQVLSLYRAFLRAARSKSAEDRRQMESIVAAEFRRNAKQIDRKNFIHIEYLLRR
TrEMBL top hitse value%identityAlignment
A0A4Y1RWH0 LYR family of Fe/S cluster biogenesis protein3.9e-2164.77Show/hide
Query:  MGISSGPKLSGLQKQVLSLYRAFLRAARSKSAEDRRQMESIVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKSVVESLKCLKM
        MG+S GP+LSG+QKQVLSLYR FLRAAR+KSAEDR+Q+ES+V++EFRRNAK++DRKNF++IEYLLRRA     +   S V  L  L +
Subjt:  MGISSGPKLSGLQKQVLSLYRAFLRAARSKSAEDRRQMESIVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKSVVESLKCLKM
A0A6A6LBB8 Ribulose bisphosphate carboxylase small subunit1.0e-2159.62Show/hide
Query:  MGISSGPKLSGLQKQVLSLYRAFLRAARSKSAEDRRQMESIVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKSVVESLKCLKMRTMDFSSFVRLR
        MG SSGPKLSG+QKQVLSLYR FLRAAR KS EDRRQ+ESIV+AEFRRN++Q+DRKNF++IEYLLRRA +    +      S+          S+F   R
Subjt:  MGISSGPKLSGLQKQVLSLYRAFLRAARSKSAEDRRQMESIVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKSVVESLKCLKMRTMDFSSFVRLR

Query:  NTST
         T+T
Subjt:  NTST
A0A6A6LEK4 Ribulose bisphosphate carboxylase small subunit1.0e-2159.62Show/hide
Query:  MGISSGPKLSGLQKQVLSLYRAFLRAARSKSAEDRRQMESIVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKSVVESLKCLKMRTMDFSSFVRLR
        MG SSGPKLSG+QKQVLSLYR FLRAAR KS EDRRQ+ESIV+AEFRRN++Q+DRKNF++IEYLLRRA +    +      S+          S+F   R
Subjt:  MGISSGPKLSGLQKQVLSLYRAFLRAARSKSAEDRRQMESIVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKSVVESLKCLKMRTMDFSSFVRLR

Query:  NTST
         T+T
Subjt:  NTST
A0A6J1EHV2 succinate dehydrogenase assembly factor 1, mitochondrial-like3.7e-4092.93Show/hide
Query:  MGISSGPKLSGLQKQVLSLYRAFLRAARSKSAEDRRQMESIVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKSVVESLKCLKMRTMDFSSFVRL
        MGISSGPKLSGLQKQVLSLYR+FLRAARSKSAEDRRQMES+VAAEFRRNAKQIDRKNFIHIEYLLRR TINF +Q KSVVESLKCLKM TMDFSSFVRL
Subjt:  MGISSGPKLSGLQKQVLSLYRAFLRAARSKSAEDRRQMESIVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKSVVESLKCLKMRTMDFSSFVRL
A0A6J1IEP3 succinate dehydrogenase assembly factor 1, mitochondrial-like7.2e-44100Show/hide
Query:  MGISSGPKLSGLQKQVLSLYRAFLRAARSKSAEDRRQMESIVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKSVVESLKCLKMRTMDFSSFVRL
        MGISSGPKLSGLQKQVLSLYRAFLRAARSKSAEDRRQMESIVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKSVVESLKCLKMRTMDFSSFVRL
Subjt:  MGISSGPKLSGLQKQVLSLYRAFLRAARSKSAEDRRQMESIVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKSVVESLKCLKMRTMDFSSFVRL
SwissProt top hitse value%identityAlignment
B0K036 Succinate dehydrogenase assembly factor 1, mitochondrial5.4e-0450Show/hide
Query:  KLSGLQKQVLSLYRAFLRAARSKSAEDRRQMESIVAAEFRRNAKQIDRKNFIHIEYLLRR
        +LS LQ+QVLSLYR  LRA R K   + R     V AEFR++A  + R + + IEYL RR
Subjt:  KLSGLQKQVLSLYRAFLRAARSKSAEDRRQMESIVAAEFRRNAKQIDRKNFIHIEYLLRR
Arabidopsis top hitse value%identityAlignment
AT2G39725.1 LYR family of Fe/S cluster biogenesis protein3.9e-1856.63Show/hide
Query:  KLSGLQKQVLSLYRAFLRAARSKSAEDRRQMESIVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKSVVESLKCLKMRT
        KLSG+QKQVLSLYR FLRAARS+  EDR+++E IV+ EFR N+K++DRKNF +IEYLLR  T    +     + SL  +K+ T
Subjt:  KLSGLQKQVLSLYRAFLRAARSKSAEDRRQMESIVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKSVVESLKCLKMRT
AT2G39725.2 LYR family of Fe/S cluster biogenesis protein3.9e-1856.63Show/hide
Query:  KLSGLQKQVLSLYRAFLRAARSKSAEDRRQMESIVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKSVVESLKCLKMRT
        KLSG+QKQVLSLYR FLRAARS+  EDR+++E IV+ EFR N+K++DRKNF +IEYLLR  T    +     + SL  +K+ T
Subjt:  KLSGLQKQVLSLYRAFLRAARSKSAEDRRQMESIVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKSVVESLKCLKMRT

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTATCTCATCGGGGCCGAAGCTCTCAGGGTTGCAAAAGCAAGTGCTCAGTCTATACAGAGCATTTCTTCGAGCAGCTCGTTCCAAATCCGCCGAAGATCGACGGCA
AATGGAATCGATTGTCGCCGCTGAGTTTCGCCGAAACGCCAAGCAAATCGATCGCAAAAATTTCATCCACATCGAGTACCTTCTTCGTAGAGCGACGATCAATTTTGCAG
AACAGTTCAAGTCGGTGGTAGAATCCTTGAAATGTTTGAAAATGAGGACAATGGATTTTTCTTCCTTTGTGAGGTTAAGGAACACATCAACACGAGCTGGACCCGACCAA
TGCCTTCGACACGAGTGGGAACACCTCACCCATGGAACGCCAAGCTTTTAA
mRNA sequenceShow/hide mRNA sequence
AGTATTCCGAAAGAAGCAACTGCGGTGAGGAAGGTGGAAGCAATGGGTATCTCATCGGGGCCGAAGCTCTCAGGGTTGCAAAAGCAAGTGCTCAGTCTATACAGAGCATT
TCTTCGAGCAGCTCGTTCCAAATCCGCCGAAGATCGACGGCAAATGGAATCGATTGTCGCCGCTGAGTTTCGCCGAAACGCCAAGCAAATCGATCGCAAAAATTTCATCC
ACATCGAGTACCTTCTTCGTAGAGCGACGATCAATTTTGCAGAACAGTTCAAGTCGGTGGTAGAATCCTTGAAATGTTTGAAAATGAGGACAATGGATTTTTCTTCCTTT
GTGAGGTTAAGGAACACATCAACACGAGCTGGACCCGACCAATGCCTTCGACACGAGTGGGAACACCTCACCCATGGAACGCCAAGCTTTTAAAATTTTATTACCAGTAA
CTTGTTTGGGGAGGAAAGTTACTGCTTTACAATCAAATCTGCACAAA
Protein sequenceShow/hide protein sequence
MGISSGPKLSGLQKQVLSLYRAFLRAARSKSAEDRRQMESIVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKSVVESLKCLKMRTMDFSSFVRLRNTSTRAGPDQ
CLRHEWEHLTHGTPSF