; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmaCh10G003680 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh10G003680
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Descriptionnucleolar and coiled-body phosphoprotein 1-like isoform X2
Genome locationCma_Chr10:1692863..1693153
RNA-Seq ExpressionCmaCh10G003680
SyntenyCmaCh10G003680
Gene Ontology termsGO:0005730 - nucleolus (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR006594 - LIS1 homology motif


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589682.1 60S ribosomal protein L7-4, partial [Cucurbita argyrosperma subsp. sororia]1.6e-3488.3Show/hide
Query:  MSRTLTNSVSPSLLAFKPRQVLLSHHAMKQRNDAQTPKSADEAASLHPEQRTLLLHAVAFFLEHNGFSKTLKKFRSEAQIEVRTSS---MSLEK
        MSRTLTNSV+PSLLAFKPRQVLLSHHAMKQRNDAQTPKSADEAASLHP+QRTLLLHAVAFFLEHNGFSKTLKKFRSEAQIE  +S    +SLE+
Subjt:  MSRTLTNSVSPSLLAFKPRQVLLSHHAMKQRNDAQTPKSADEAASLHPEQRTLLLHAVAFFLEHNGFSKTLKKFRSEAQIEVRTSS---MSLEK
KAG7023361.1 Nucleolar and coiled-body phosphoprotein 1 [Cucurbita argyrosperma subsp. argyrosperma]6.2e-3488.3Show/hide
Query:  MSRTLTNSVSPSLLAFKPRQVLLSHHAMKQRNDAQTPKSADEAASLHPEQRTLLLHAVAFFLEHNGFSKTLKKFRSEAQIEVRTSS---MSLEK
        MSRTLTNSV+PSLLAFKPRQVLLSHHAMKQRNDAQTPKSADEAASLHPEQRTLLLHAVAFFLE NGFSKTLKKFRSEAQIE  +S    +SLE+
Subjt:  MSRTLTNSVSPSLLAFKPRQVLLSHHAMKQRNDAQTPKSADEAASLHPEQRTLLLHAVAFFLEHNGFSKTLKKFRSEAQIEVRTSS---MSLEK
XP_022922036.1 nucleolar and coiled-body phosphoprotein 1-like isoform X1 [Cucurbita moschata]8.2e-3488.3Show/hide
Query:  MSRTLTNSVSPSLLAFKPRQVLLSHHAMKQRNDAQTPKSADEAASLHPEQRTLLLHAVAFFLEHNGFSKTLKKFRSEAQIEVRTSS---MSLEK
        MSRTLTNSV+PSLLAFKPRQVLLSHHAMKQR DAQTPKSADEAASLHPEQRTLLLHAVAFFLEHNGFSKTLKKFRSEAQIE  +S    +SLE+
Subjt:  MSRTLTNSVSPSLLAFKPRQVLLSHHAMKQRNDAQTPKSADEAASLHPEQRTLLLHAVAFFLEHNGFSKTLKKFRSEAQIEVRTSS---MSLEK
XP_022987332.1 nucleolar and coiled-body phosphoprotein 1-like isoform X1 [Cucurbita maxima]3.3e-3590.43Show/hide
Query:  MSRTLTNSVSPSLLAFKPRQVLLSHHAMKQRNDAQTPKSADEAASLHPEQRTLLLHAVAFFLEHNGFSKTLKKFRSEAQIEVRTSS---MSLEK
        MSRTLTNSVSPSLLAFKPRQVLLSHHAMKQRNDAQTPKSADEAASLHPEQRTLLLHAVAFFLEHNGFSKTLKKFRSEAQIE  +S    +SLE+
Subjt:  MSRTLTNSVSPSLLAFKPRQVLLSHHAMKQRNDAQTPKSADEAASLHPEQRTLLLHAVAFFLEHNGFSKTLKKFRSEAQIEVRTSS---MSLEK
XP_022987333.1 nucleolar and coiled-body phosphoprotein 1-like isoform X2 [Cucurbita maxima]3.3e-3590.43Show/hide
Query:  MSRTLTNSVSPSLLAFKPRQVLLSHHAMKQRNDAQTPKSADEAASLHPEQRTLLLHAVAFFLEHNGFSKTLKKFRSEAQIEVRTSS---MSLEK
        MSRTLTNSVSPSLLAFKPRQVLLSHHAMKQRNDAQTPKSADEAASLHPEQRTLLLHAVAFFLEHNGFSKTLKKFRSEAQIE  +S    +SLE+
Subjt:  MSRTLTNSVSPSLLAFKPRQVLLSHHAMKQRNDAQTPKSADEAASLHPEQRTLLLHAVAFFLEHNGFSKTLKKFRSEAQIEVRTSS---MSLEK
TrEMBL top hitse value%identityAlignment
A0A6J1E202 nucleolar and coiled-body phosphoprotein 1-like isoform X23.9e-3488.3Show/hide
Query:  MSRTLTNSVSPSLLAFKPRQVLLSHHAMKQRNDAQTPKSADEAASLHPEQRTLLLHAVAFFLEHNGFSKTLKKFRSEAQIEVRTSS---MSLEK
        MSRTLTNSV+PSLLAFKPRQVLLSHHAMKQR DAQTPKSADEAASLHPEQRTLLLHAVAFFLEHNGFSKTLKKFRSEAQIE  +S    +SLE+
Subjt:  MSRTLTNSVSPSLLAFKPRQVLLSHHAMKQRNDAQTPKSADEAASLHPEQRTLLLHAVAFFLEHNGFSKTLKKFRSEAQIEVRTSS---MSLEK
A0A6J1E312 nucleolar and coiled-body phosphoprotein 1-like isoform X13.9e-3488.3Show/hide
Query:  MSRTLTNSVSPSLLAFKPRQVLLSHHAMKQRNDAQTPKSADEAASLHPEQRTLLLHAVAFFLEHNGFSKTLKKFRSEAQIEVRTSS---MSLEK
        MSRTLTNSV+PSLLAFKPRQVLLSHHAMKQR DAQTPKSADEAASLHPEQRTLLLHAVAFFLEHNGFSKTLKKFRSEAQIE  +S    +SLE+
Subjt:  MSRTLTNSVSPSLLAFKPRQVLLSHHAMKQRNDAQTPKSADEAASLHPEQRTLLLHAVAFFLEHNGFSKTLKKFRSEAQIEVRTSS---MSLEK
A0A6J1IB66 nucleolar and coiled-body phosphoprotein 1 isoform X21.7e-2471.28Show/hide
Query:  MSRTLTNSVSPSLLAFKPRQVLLSHHAMKQRNDAQTPKSADEAASLHPEQRTLLLHAVAFFLEHNGFSKTLKKFRSEAQIEVRTS---SMSLEK
        M+RTLT SVSPSLLAFKPRQVLLSHH  K+ ND + P SA +A SL PEQRT+LLHAV+ FL+ NGFSKTLKKFRSEAQIE   S   S+SLE+
Subjt:  MSRTLTNSVSPSLLAFKPRQVLLSHHAMKQRNDAQTPKSADEAASLHPEQRTLLLHAVAFFLEHNGFSKTLKKFRSEAQIEVRTS---SMSLEK
A0A6J1JA31 nucleolar and coiled-body phosphoprotein 1-like isoform X11.6e-3590.43Show/hide
Query:  MSRTLTNSVSPSLLAFKPRQVLLSHHAMKQRNDAQTPKSADEAASLHPEQRTLLLHAVAFFLEHNGFSKTLKKFRSEAQIEVRTSS---MSLEK
        MSRTLTNSVSPSLLAFKPRQVLLSHHAMKQRNDAQTPKSADEAASLHPEQRTLLLHAVAFFLEHNGFSKTLKKFRSEAQIE  +S    +SLE+
Subjt:  MSRTLTNSVSPSLLAFKPRQVLLSHHAMKQRNDAQTPKSADEAASLHPEQRTLLLHAVAFFLEHNGFSKTLKKFRSEAQIEVRTSS---MSLEK
A0A6J1JJ58 nucleolar and coiled-body phosphoprotein 1-like isoform X21.6e-3590.43Show/hide
Query:  MSRTLTNSVSPSLLAFKPRQVLLSHHAMKQRNDAQTPKSADEAASLHPEQRTLLLHAVAFFLEHNGFSKTLKKFRSEAQIEVRTSS---MSLEK
        MSRTLTNSVSPSLLAFKPRQVLLSHHAMKQRNDAQTPKSADEAASLHPEQRTLLLHAVAFFLEHNGFSKTLKKFRSEAQIE  +S    +SLE+
Subjt:  MSRTLTNSVSPSLLAFKPRQVLLSHHAMKQRNDAQTPKSADEAASLHPEQRTLLLHAVAFFLEHNGFSKTLKKFRSEAQIEVRTSS---MSLEK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G57120.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif (InterPro:IPR006594), SRP40, C-terminal (InterPro:IPR007718); Has 101969 Blast hits to 55488 proteins in 2506 species: Archae - 424; Bacteria - 13843; Metazoa - 37674; Fungi - 9726; Plants - 4941; Viruses - 569; Other Eukaryotes - 34792 (source: NCBI BLink).2.5e-0447.92Show/hide
Query:  EAASLHPEQRTLLLHAVAFFLEHNGFSKTLKKFRSEAQIEVRTSSMSL
        + ++L  EQ+ LLL +VA +LE  GFSK  KK  SEA+IE +  + SL
Subjt:  EAASLHPEQRTLLLHAVAFFLEHNGFSKTLKKFRSEAQIEVRTSSMSL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCCGAACCCTAACCAATTCTGTTAGTCCATCTCTTCTCGCCTTCAAACCTCGTCAAGTTCTTCTCTCCCACCACGCTATGAAGCAAAGAAACGACGCCCAA
ACTCCCAAGTCTGCCGATGAAGCCGCATCCTTACACCCGGAGCAGAGGACTCTTCTTCTTCACGCTGTAGCTTTCTTTTTGGAGCACAATGGCTTCTCCAAAACC
CTCAAAAAGTTTCGTTCCGAAGCGCAGATTGAGGTCCGTACTTCTTCCATGTCTCTAGAAAAACAGTTATTCGCACTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCCCGAACCCTAACCAATTCTGTTAGTCCATCTCTTCTCGCCTTCAAACCTCGTCAAGTTCTTCTCTCCCACCACGCTATGAAGCAAAGAAACGACGCCCAA
ACTCCCAAGTCTGCCGATGAAGCCGCATCCTTACACCCGGAGCAGAGGACTCTTCTTCTTCACGCTGTAGCTTTCTTTTTGGAGCACAATGGCTTCTCCAAAACC
CTCAAAAAGTTTCGTTCCGAAGCGCAGATTGAGGTCCGTACTTCTTCCATGTCTCTAGAAAAACAGTTATTCGCACTGTAG
Protein sequenceShow/hide protein sequence
MSRTLTNSVSPSLLAFKPRQVLLSHHAMKQRNDAQTPKSADEAASLHPEQRTLLLHAVAFFLEHNGFSKTLKKFRSEAQIEVRTSSMSLEKQLFAL