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CmaCh11G003100 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh11G003100
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Descriptionpentatricopeptide repeat-containing protein At3g18020
Genome locationCma_Chr11:1540498..1541024
RNA-Seq ExpressionCmaCh11G003100
SyntenyCmaCh11G003100
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6587684.1 hypothetical protein SDJN03_16249, partial [Cucurbita argyrosperma subsp. sororia]1.0e-1856.31Show/hide
Query:  MDRTAENWYWKRASPTALARRRRFMDAVPSSEMSMKCSGFSTPSASMEINCILLISVIFCSFSLPNVAHRVLFDMKSERQCPNVVTCSTLIDGYCCVRNV
        MDRTAENWYWKRASPTA+ARRR FM +VPSSEMSMK  GF TPSAS  I+CILLI  +F      N    ++  ++S  Q P+V+T  T++ G+C V  V
Subjt:  MDRTAENWYWKRASPTALARRRRFMDAVPSSEMSMKCSGFSTPSASMEINCILLISVIFCSFSLPNVAHRVLFDMKSERQCPNVVTCSTLIDGYCCVRNV

Query:  SAA
          A
Subjt:  SAA

KAG7021649.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]4.0e-1082.22Show/hide
Query:  CSFSLPNVAHRVLFDMKSERQCPNVVTCSTLIDGYCCVRNVSAAE
        CS  LP  AHRV FDMKSERQCPNVV+CSTLIDGYC V NVSAAE
Subjt:  CSFSLPNVAHRVLFDMKSERQCPNVVTCSTLIDGYCCVRNVSAAE

XP_011649150.1 pentatricopeptide repeat-containing protein At3g18020 [Cucumis sativus]4.7e-1180.43Show/hide
Query:  FCSFSLPNVAHRVLFDMKSERQCPNVVTCSTLIDGYCCVRNVSAAE
        FCSFSLPNVAHRVLFDMKS   CPNVV+ + LIDGYC V NVSAAE
Subjt:  FCSFSLPNVAHRVLFDMKSERQCPNVVTCSTLIDGYCCVRNVSAAE

XP_022134613.1 LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g18020 [Momordica charantia]2.3e-1071.74Show/hide
Query:  FCSFSLPNVAHRVLFDMKSERQCPNVVTCSTLIDGYCCVRNVSAAE
        FCSFSLPNVAHR+LFDM     CPN V+ +TLIDGYCCV NV AA+
Subjt:  FCSFSLPNVAHRVLFDMKSERQCPNVVTCSTLIDGYCCVRNVSAAE

XP_022988488.1 pentatricopeptide repeat-containing protein At3g18020 [Cucurbita maxima]5.6e-1278.26Show/hide
Query:  FCSFSLPNVAHRVLFDMKSERQCPNVVTCSTLIDGYCCVRNVSAAE
        FC FSLP+VAHRVLFDMKS   CPNVV+ +TLIDGYCCV N+SAAE
Subjt:  FCSFSLPNVAHRVLFDMKSERQCPNVVTCSTLIDGYCCVRNVSAAE

TrEMBL top hitse value%identityAlignment
A0A0A0LV25 Uncharacterized protein2.3e-1180.43Show/hide
Query:  FCSFSLPNVAHRVLFDMKSERQCPNVVTCSTLIDGYCCVRNVSAAE
        FCSFSLPNVAHRVLFDMKS   CPNVV+ + LIDGYC V NVSAAE
Subjt:  FCSFSLPNVAHRVLFDMKSERQCPNVVTCSTLIDGYCCVRNVSAAE

A0A1S3BWE8 pentatricopeptide repeat-containing protein At3g180202.5e-1078.26Show/hide
Query:  FCSFSLPNVAHRVLFDMKSERQCPNVVTCSTLIDGYCCVRNVSAAE
        FCSFSLPNVAHRVLFDMKS    PNVV+ + LIDGYC V NVSAAE
Subjt:  FCSFSLPNVAHRVLFDMKSERQCPNVVTCSTLIDGYCCVRNVSAAE

A0A5D3DXA6 Pentatricopeptide repeat-containing protein2.5e-1078.26Show/hide
Query:  FCSFSLPNVAHRVLFDMKSERQCPNVVTCSTLIDGYCCVRNVSAAE
        FCSFSLPNVAHRVLFDMKS    PNVV+ + LIDGYC V NVSAAE
Subjt:  FCSFSLPNVAHRVLFDMKSERQCPNVVTCSTLIDGYCCVRNVSAAE

A0A6J1C2H5 LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g180201.1e-1071.74Show/hide
Query:  FCSFSLPNVAHRVLFDMKSERQCPNVVTCSTLIDGYCCVRNVSAAE
        FCSFSLPNVAHR+LFDM     CPN V+ +TLIDGYCCV NV AA+
Subjt:  FCSFSLPNVAHRVLFDMKSERQCPNVVTCSTLIDGYCCVRNVSAAE

A0A6J1JMF0 pentatricopeptide repeat-containing protein At3g180202.7e-1278.26Show/hide
Query:  FCSFSLPNVAHRVLFDMKSERQCPNVVTCSTLIDGYCCVRNVSAAE
        FC FSLP+VAHRVLFDMKS   CPNVV+ +TLIDGYCCV N+SAAE
Subjt:  FCSFSLPNVAHRVLFDMKSERQCPNVVTCSTLIDGYCCVRNVSAAE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G18020.1 Pentatricopeptide repeat (PPR) superfamily protein3.5e-0447.22Show/hide
Query:  AHRVLFDMKSERQCPNVVTCSTLIDGYCCVRNVSAA
        AH+++FDM++    P+VVT +TLI GYC +R +  A
Subjt:  AHRVLFDMKSERQCPNVVTCSTLIDGYCCVRNVSAA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCGGACGGCCGAAAATTGGTACTGGAAGAGAGCTTCGCCGACGGCCCTTGCTAGACGAAGAAGATTCATGGACGCTGTACCAAGTAGCGAAATGTCGATGAAATG
TTCCGGTTTCTCGACGCCCTCCGCCTCCATGGAAATCAATTGCATTCTCTTAATCTCGGTAATTTTTTGTTCGTTTTCACTACCGAATGTAGCTCATAGGGTTTTATTTG
ATATGAAGAGTGAAAGACAGTGTCCAAATGTTGTTACCTGTTCAACCTTGATCGATGGATACTGCTGTGTTCGTAACGTATCTGCTGCCGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATCGGACGGCCGAAAATTGGTACTGGAAGAGAGCTTCGCCGACGGCCCTTGCTAGACGAAGAAGATTCATGGACGCTGTACCAAGTAGCGAAATGTCGATGAAATG
TTCCGGTTTCTCGACGCCCTCCGCCTCCATGGAAATCAATTGCATTCTCTTAATCTCGGTAATTTTTTGTTCGTTTTCACTACCGAATGTAGCTCATAGGGTTTTATTTG
ATATGAAGAGTGAAAGACAGTGTCCAAATGTTGTTACCTGTTCAACCTTGATCGATGGATACTGCTGTGTTCGTAACGTATCTGCTGCCGAGTAA
Protein sequenceShow/hide protein sequence
MDRTAENWYWKRASPTALARRRRFMDAVPSSEMSMKCSGFSTPSASMEINCILLISVIFCSFSLPNVAHRVLFDMKSERQCPNVVTCSTLIDGYCCVRNVSAAE