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CmaCh11G012960 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh11G012960
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionRING-type domain-containing protein
Genome locationCma_Chr11:8643066..8643452
RNA-Seq ExpressionCmaCh11G012960
SyntenyCmaCh11G012960
Gene Ontology termsGO:0009987 - cellular process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0016020 - membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589096.1 AP-1 complex subunit sigma-2, partial [Cucurbita argyrosperma subsp. sororia]2.7e-4088.42Show/hide
Query:  MISLALGRGPTCVATIVFFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELPPCEVKLPVCRFEELHRGGRSEEDICSVCLAEFTREDLVSQLH
        MISLALGRGPTCVATIV FTCVWIPLCQLKTFLESMIGILSGRTYQQLTMEL PCEVKLPVCRF+ELHRG  SEEDICSVCLA FT EDL   +H
Subjt:  MISLALGRGPTCVATIVFFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELPPCEVKLPVCRFEELHRGGRSEEDICSVCLAEFTREDLVSQLH

KAG7022803.1 AP-1 complex subunit sigma-2, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-3991.21Show/hide
Query:  MISLALGRGPTCVATIVFFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELPPCEVKLPVCRFEELHRGGRSEEDICSVCLAEFTREDLV
        MISLALGRGPTCVATIV FTCVWIPLCQLKTFLESMIGILSGRTYQQLTMEL PCEVKLPVCRFEELHRG  SEEDICSVCLA +T EDL+
Subjt:  MISLALGRGPTCVATIVFFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELPPCEVKLPVCRFEELHRGGRSEEDICSVCLAEFTREDLV

MBA0556883.1 hypothetical protein [Gossypium lobatum]5.4e-2545.31Show/hide
Query:  MISLALGRGPTCVATIVFFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELPPCEVKLPVCRFEELHRG----GRSEEDICSVCLAEFTREDLVSQLHR
        MISL      +C A ++F+TCVWIP  Q K F+ S++G +  R+  ++        V LPV RFE+L         +EE++CS+CL EF  +D VSQ+ +
Subjt:  MISLALGRGPTCVATIVFFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELPPCEVKLPVCRFEELHRG----GRSEEDICSVCLAEFTREDLVSQLHR

Query:  CTHIFHYECIENWLHRYHFTCPLCRSLL
        C H+FH  CIE W+ R HFTCPLCRS+L
Subjt:  CTHIFHYECIENWLHRYHFTCPLCRSLL

MBA0682837.1 hypothetical protein [Gossypium aridum]9.2e-2545.31Show/hide
Query:  MISLALGRGPTCVATIVFFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELPPCEVKLPVCRFEELHRG----GRSEEDICSVCLAEFTREDLVSQLHR
        MISL      +C A ++F+TCVWIP  Q K F+ S++G +  R+   +        V LPV RFE+L         +EE++CS+CL EF  +D VSQ+ +
Subjt:  MISLALGRGPTCVATIVFFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELPPCEVKLPVCRFEELHRG----GRSEEDICSVCLAEFTREDLVSQLHR

Query:  CTHIFHYECIENWLHRYHFTCPLCRSLL
        C H+FH  CIE W+ R HFTCPLCRS+L
Subjt:  CTHIFHYECIENWLHRYHFTCPLCRSLL

XP_012481249.1 PREDICTED: RING-H2 finger protein ATL18-like [Gossypium raimondii]7.1e-2545.31Show/hide
Query:  MISLALGRGPTCVATIVFFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELPPCEVKLPVCRFEELHRG----GRSEEDICSVCLAEFTREDLVSQLHR
        MISL      +C A ++F+TCVWIP  Q K F+ S++G +  R+   +        V LPV RFE+L         +EE++CS+CL EF  +D VSQ+ +
Subjt:  MISLALGRGPTCVATIVFFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELPPCEVKLPVCRFEELHRG----GRSEEDICSVCLAEFTREDLVSQLHR

Query:  CTHIFHYECIENWLHRYHFTCPLCRSLL
        C H+FH  CIE W+ R HFTCPLCRS+L
Subjt:  CTHIFHYECIENWLHRYHFTCPLCRSLL

TrEMBL top hitse value%identityAlignment
A0A0A0K513 RING-type domain-containing protein5.8e-4167.97Show/hide
Query:  MISLALGRGPTCVATIVFFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELPPCEVKLPVCRFEELHRGGRSEEDICSVCLAEFTREDLVSQLHRCTHI
        MI +AL RG   +ATIVF TCVWIPL QLK  + SM  ILSGRT Q LT    PCEVKL VCRFEEL R   SEE+ICSVCL EFTRE LVSQLHRC+H+
Subjt:  MISLALGRGPTCVATIVFFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELPPCEVKLPVCRFEELHRGGRSEEDICSVCLAEFTREDLVSQLHRCTHI

Query:  FHYECIENWLHRYHFTCPLCRSLLSSTL
        FH ECIE+WL R  FTCPLCRS +   L
Subjt:  FHYECIENWLHRYHFTCPLCRSLLSSTL

A0A0D2SLB9 RING-type domain-containing protein3.4e-2545.31Show/hide
Query:  MISLALGRGPTCVATIVFFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELPPCEVKLPVCRFEELHRG----GRSEEDICSVCLAEFTREDLVSQLHR
        MISL      +C A ++F+TCVWIP  Q K F+ S++G +  R+   +        V LPV RFE+L         +EE++CS+CL EF  +D VSQ+ +
Subjt:  MISLALGRGPTCVATIVFFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELPPCEVKLPVCRFEELHRG----GRSEEDICSVCLAEFTREDLVSQLHR

Query:  CTHIFHYECIENWLHRYHFTCPLCRSLL
        C H+FH  CIE W+ R HFTCPLCRS+L
Subjt:  CTHIFHYECIENWLHRYHFTCPLCRSLL

A0A1U8JQC4 RING-H2 finger protein ATL18-like3.4e-2545.31Show/hide
Query:  MISLALGRGPTCVATIVFFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELPPCEVKLPVCRFEELHRG----GRSEEDICSVCLAEFTREDLVSQLHR
        MISL      +C A ++F+TCVWIP  Q K F+ S++G +  R+   +        V LPV RFE+L         +EE++CS+CL EF  +D VSQ+ +
Subjt:  MISLALGRGPTCVATIVFFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELPPCEVKLPVCRFEELHRG----GRSEEDICSVCLAEFTREDLVSQLHR

Query:  CTHIFHYECIENWLHRYHFTCPLCRSLL
        C H+FH  CIE W+ R HFTCPLCRS+L
Subjt:  CTHIFHYECIENWLHRYHFTCPLCRSLL

A0A5D2M180 RING-type domain-containing protein3.4e-2545.31Show/hide
Query:  MISLALGRGPTCVATIVFFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELPPCEVKLPVCRFEELHRG----GRSEEDICSVCLAEFTREDLVSQLHR
        MISL      +C A ++F+TCVWIP  Q K F+ S++G +  R+   +        V LPV RFE+L         +EE++CS+CL EF  +D VSQ+ +
Subjt:  MISLALGRGPTCVATIVFFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELPPCEVKLPVCRFEELHRG----GRSEEDICSVCLAEFTREDLVSQLHR

Query:  CTHIFHYECIENWLHRYHFTCPLCRSLL
        C H+FH  CIE W+ R HFTCPLCRS+L
Subjt:  CTHIFHYECIENWLHRYHFTCPLCRSLL

A0A7J8LWW2 RING-type domain-containing protein2.6e-2545.31Show/hide
Query:  MISLALGRGPTCVATIVFFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELPPCEVKLPVCRFEELHRG----GRSEEDICSVCLAEFTREDLVSQLHR
        MISL      +C A ++F+TCVWIP  Q K F+ S++G +  R+  ++        V LPV RFE+L         +EE++CS+CL EF  +D VSQ+ +
Subjt:  MISLALGRGPTCVATIVFFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELPPCEVKLPVCRFEELHRG----GRSEEDICSVCLAEFTREDLVSQLHR

Query:  CTHIFHYECIENWLHRYHFTCPLCRSLL
        C H+FH  CIE W+ R HFTCPLCRS+L
Subjt:  CTHIFHYECIENWLHRYHFTCPLCRSLL

SwissProt top hitse value%identityAlignment
Q9SI09 Probable E3 ubiquitin-protein ligase XERICO1.1e-0940.3Show/hide
Query:  KLPVCRFEELHRGGRSEEDICSVCLAEFTREDLVSQLHRCTHIFHYECIENWLHRYHFTCPLCRSLL
        + P  RFE L R  +  ++ CSVCL++F  +  +++L +C H+FH  C+E W+  ++ TCPLCR+ L
Subjt:  KLPVCRFEELHRGGRSEEDICSVCLAEFTREDLVSQLHRCTHIFHYECIENWLHRYHFTCPLCRSLL

Q9SUS4 Probable E3 ubiquitin-protein ligase RHA1A5.6e-0942.19Show/hide
Query:  LPVCRFEELHRGGRSEEDICSVCLAEFTREDLVSQLHRCTHIFHYECIENWLHRYH-FTCPLCR
        +PV RF +L       ED C+VCL++F  +D V QL +C H+FH+ C++ W+  Y+   CP+CR
Subjt:  LPVCRFEELHRGGRSEEDICSVCLAEFTREDLVSQLHRCTHIFHYECIENWLHRYH-FTCPLCR

Q9SUS5 E3 ubiquitin-protein ligase RHA1B1.5e-0933.33Show/hide
Query:  PLCQLKTFLESMIGILSGRTYQQLTMELPPCEVKLPVCRFEELHRGGRSEEDICSVCLAEFTREDLVSQLHRCTHIFHYECIENWLHRYH-FTCPLCRS
        P   L +FL+      S  T   L+         +PV RF +L       ED C+VCL++F  +D + QL +C H+FH+ C++ W+   +  TCP+CR+
Subjt:  PLCQLKTFLESMIGILSGRTYQQLTMELPPCEVKLPVCRFEELHRGGRSEEDICSVCLAEFTREDLVSQLHRCTHIFHYECIENWLHRYH-FTCPLCRS

Q9SZL4 RING-H2 finger protein ATL186.2e-1637.31Show/hide
Query:  MISLALGRGPTCVATIVFFTCVWIPLCQLK----------TFLESMIGILSGRTYQQLTMELPPCEVKLPVCRFEELHRGGRSEEDICSVCLAEFTREDL
        MIS+   R P C A IVF+TCV IPL +LK              +++G++ G   ++                          EE  C +CL EF  ED 
Subjt:  MISLALGRGPTCVATIVFFTCVWIPLCQLK----------TFLESMIGILSGRTYQQLTMELPPCEVKLPVCRFEELHRGGRSEEDICSVCLAEFTREDL

Query:  VSQLHRCTHIFHYECIENWLHRYHFTCPLCRSLL
        V+ L RC H+FH  CIE WL R H TCPLCRS +
Subjt:  VSQLHRCTHIFHYECIENWLHRYHFTCPLCRSLL

Q9ZT50 E3 ubiquitin-protein ligase RHA2A5.6e-0949.12Show/hide
Query:  GGRSEEDICSVCLAEFTREDLVSQLHRCTHIFHYECIENWLHRYHFTCPLCRSLLSS
        GG    D C VCL++    + V +L  C H+FH +C+E WLH+++FTCPLCRS L S
Subjt:  GGRSEEDICSVCLAEFTREDLVSQLHRCTHIFHYECIENWLHRYHFTCPLCRSLLSS

Arabidopsis top hitse value%identityAlignment
AT1G24580.1 RING/U-box superfamily protein1.2e-1132.11Show/hide
Query:  IPLCQLKTFLESMIGILSGRTYQQLTMELPP----CEVKLPVCRFEELHRGGRSEED----ICSVCLAEFTREDLVSQLHRCTHIFHYECIENWLHRYHF
        + +  LK  + S+  I++  T   + ++  P       ++ + +F+ L      EE+     C VCL  F  E+ VS+L  C H FH  C++NW    H 
Subjt:  IPLCQLKTFLESMIGILSGRTYQQLTMELPP----CEVKLPVCRFEELHRGGRSEED----ICSVCLAEFTREDLVSQLHRCTHIFHYECIENWLHRYHF

Query:  TCPLCRSLL
        TCPLCRS+L
Subjt:  TCPLCRSLL

AT1G67856.1 RING/U-box superfamily protein2.8e-1143.66Show/hide
Query:  KLPVCRFEEL--HRGGRSEEDI--CSVCLAEFTREDLVSQLHRCTHIFHYECIENWLHRYHFTCPLCRSLL
        ++ +  FE L  +RG R+E +   C VCL  F  E+ VS+L  C H FH  C++ W    H TCPLCRS+L
Subjt:  KLPVCRFEEL--HRGGRSEEDI--CSVCLAEFTREDLVSQLHRCTHIFHYECIENWLHRYHFTCPLCRSLL

AT2G04240.1 RING/U-box superfamily protein8.1e-1140.3Show/hide
Query:  KLPVCRFEELHRGGRSEEDICSVCLAEFTREDLVSQLHRCTHIFHYECIENWLHRYHFTCPLCRSLL
        + P  RFE L R  +  ++ CSVCL++F  +  +++L +C H+FH  C+E W+  ++ TCPLCR+ L
Subjt:  KLPVCRFEELHRGGRSEEDICSVCLAEFTREDLVSQLHRCTHIFHYECIENWLHRYHFTCPLCRSLL

AT2G04240.2 RING/U-box superfamily protein8.1e-1140.3Show/hide
Query:  KLPVCRFEELHRGGRSEEDICSVCLAEFTREDLVSQLHRCTHIFHYECIENWLHRYHFTCPLCRSLL
        + P  RFE L R  +  ++ CSVCL++F  +  +++L +C H+FH  C+E W+  ++ TCPLCR+ L
Subjt:  KLPVCRFEELHRGGRSEEDICSVCLAEFTREDLVSQLHRCTHIFHYECIENWLHRYHFTCPLCRSLL

AT4G38140.1 RING/U-box superfamily protein4.4e-1737.31Show/hide
Query:  MISLALGRGPTCVATIVFFTCVWIPLCQLK----------TFLESMIGILSGRTYQQLTMELPPCEVKLPVCRFEELHRGGRSEEDICSVCLAEFTREDL
        MIS+   R P C A IVF+TCV IPL +LK              +++G++ G   ++                          EE  C +CL EF  ED 
Subjt:  MISLALGRGPTCVATIVFFTCVWIPLCQLK----------TFLESMIGILSGRTYQQLTMELPPCEVKLPVCRFEELHRGGRSEEDICSVCLAEFTREDL

Query:  VSQLHRCTHIFHYECIENWLHRYHFTCPLCRSLL
        V+ L RC H+FH  CIE WL R H TCPLCRS +
Subjt:  VSQLHRCTHIFHYECIENWLHRYHFTCPLCRSLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAAGCTTAGCATTAGGTCGAGGTCCAACCTGTGTGGCCACCATTGTCTTCTTCACTTGTGTGTGGATCCCTCTGTGTCAACTGAAGACGTTCCTCGAGAGC
ATGATCGGGATTCTGTCAGGCAGGACGTATCAGCAGCTCACAATGGAGTTGCCACCGTGCGAGGTAAAACTTCCAGTTTGTAGGTTCGAAGAGCTGCATCGTGGC
GGCAGATCGGAAGAGGATATTTGCTCCGTTTGCTTGGCGGAGTTCACCCGAGAAGATTTGGTGAGCCAACTGCATAGATGTACCCATATTTTTCATTATGAATGT
ATTGAGAATTGGCTCCATAGATATCATTTTACCTGCCCTTTGTGCAGATCCCTTCTCTCTTCTACACTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGATAAGCTTAGCATTAGGTCGAGGTCCAACCTGTGTGGCCACCATTGTCTTCTTCACTTGTGTGTGGATCCCTCTGTGTCAACTGAAGACGTTCCTCGAGAGC
ATGATCGGGATTCTGTCAGGCAGGACGTATCAGCAGCTCACAATGGAGTTGCCACCGTGCGAGGTAAAACTTCCAGTTTGTAGGTTCGAAGAGCTGCATCGTGGC
GGCAGATCGGAAGAGGATATTTGCTCCGTTTGCTTGGCGGAGTTCACCCGAGAAGATTTGGTGAGCCAACTGCATAGATGTACCCATATTTTTCATTATGAATGT
ATTGAGAATTGGCTCCATAGATATCATTTTACCTGCCCTTTGTGCAGATCCCTTCTCTCTTCTACACTGTAA
Protein sequenceShow/hide protein sequence
MISLALGRGPTCVATIVFFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELPPCEVKLPVCRFEELHRGGRSEEDICSVCLAEFTREDLVSQLHRCTHIFHYEC
IENWLHRYHFTCPLCRSLLSSTL