; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmaCh11G014190 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh11G014190
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCma_Chr11:9347446..9350868
RNA-Seq ExpressionCmaCh11G014190
SyntenyCmaCh11G014190
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0043167 - ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYJ95793.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.7e-9850.39Show/hide
Query:  KKGHPPYKCWRRPNAFYSKCNQLGHEAVICKVKDQVKEVDAQVVDQEEEEEDQLFVATCFSGKESSESWLIDSGCTNHMTYDKEFFEELRDTEVKRVRIG
        K+GHPP+KCWRRPNA  +KCNQ+GHEAVIC+  +Q + V+A++  QEEEEEDQLFVATCF G ES+ESWLIDSGCTNHMT+DKE F++L+ T + +VRIG
Subjt:  KKGHPPYKCWRRPNAFYSKCNQLGHEAVICKVKDQVKEVDAQVVDQEEEEEDQLFVATCFSGKESSESWLIDSGCTNHMTYDKEFFEELRDTEVKRVRIG

Query:  NGEHLEVKGKGTVTITS------------------------------YEVLFENEQCLIKDSSGKDLFNVKMKGKSFALNPMDVEQMAFISKASATEIWH
        NG+++ VKGKGT+ I S                              ++V FENE CLIKD++ +D+F VKMKGKSF+LNP++ EQ  F  K   T++WH
Subjt:  NGEHLEVKGKGTVTITS------------------------------YEVLFENEQCLIKDSSGKDLFNVKMKGKSFALNPMDVEQMAFISKASATEIWH

Query:  KRLGHFHHRGLLQM------------------------QSKK---------------------------------------------------QQKSEVA
        KR+GH+HH+GLLQ+                        Q++K                                                   + KSEVA
Subjt:  KRLGHFHHRGLLQM------------------------QSKK---------------------------------------------------QQKSEVA

Query:  GVFWKFKARVENESVCLIQTVRSDNGKEYTSETFNRFCDEAGIEHQLTAPYTPQQNGVSERRNRFIMEMTRCMLHEKDLPKCF
         VFWKFKARVENES C IQ VRSDNGKEY S  F++FC+++GI+HQLTAPYTPQQNGVSERRNR+IMEMTRCMLHEK LPK F
Subjt:  GVFWKFKARVENESVCLIQTVRSDNGKEYTSETFNRFCDEAGIEHQLTAPYTPQQNGVSERRNRFIMEMTRCMLHEKDLPKCF

TYK12368.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.7e-9850.39Show/hide
Query:  KKGHPPYKCWRRPNAFYSKCNQLGHEAVICKVKDQVKEVDAQVVDQEEEEEDQLFVATCFSGKESSESWLIDSGCTNHMTYDKEFFEELRDTEVKRVRIG
        K+GHPP+KCWRRPNA  +KCNQ+GHEAVIC+  +Q + V+A++  QEEEEEDQLFVATCF G ES+ESWLIDSGCTNHMT+DKE F++L+ T + +VRIG
Subjt:  KKGHPPYKCWRRPNAFYSKCNQLGHEAVICKVKDQVKEVDAQVVDQEEEEEDQLFVATCFSGKESSESWLIDSGCTNHMTYDKEFFEELRDTEVKRVRIG

Query:  NGEHLEVKGKGTVTITS------------------------------YEVLFENEQCLIKDSSGKDLFNVKMKGKSFALNPMDVEQMAFISKASATEIWH
        NG+++ VKGKGT+ I S                              ++V FENE CLIKD++ +D+F VKMKGKSF+LNP++ EQ  F  K   T++WH
Subjt:  NGEHLEVKGKGTVTITS------------------------------YEVLFENEQCLIKDSSGKDLFNVKMKGKSFALNPMDVEQMAFISKASATEIWH

Query:  KRLGHFHHRGLLQM------------------------QSKK---------------------------------------------------QQKSEVA
        KR+GH+HH+GLLQ+                        Q++K                                                   + KSEVA
Subjt:  KRLGHFHHRGLLQM------------------------QSKK---------------------------------------------------QQKSEVA

Query:  GVFWKFKARVENESVCLIQTVRSDNGKEYTSETFNRFCDEAGIEHQLTAPYTPQQNGVSERRNRFIMEMTRCMLHEKDLPKCF
         VFWKFKARVENES C IQ VRSDNGKEY S  F++FC+++GI+HQLTAPYTPQQNGVSERRNR+IMEMTRCMLHEK LPK F
Subjt:  GVFWKFKARVENESVCLIQTVRSDNGKEYTSETFNRFCDEAGIEHQLTAPYTPQQNGVSERRNRFIMEMTRCMLHEKDLPKCF

TYK21117.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.7e-9850.39Show/hide
Query:  KKGHPPYKCWRRPNAFYSKCNQLGHEAVICKVKDQVKEVDAQVVDQEEEEEDQLFVATCFSGKESSESWLIDSGCTNHMTYDKEFFEELRDTEVKRVRIG
        K+GHPP+KCWRRPNA  +KCNQ+GHEAVIC+  +Q + V+A++  QEEEEEDQLFVATCF G ES+ESWLIDSGCTNHMT+DKE F++L+ T + +VRIG
Subjt:  KKGHPPYKCWRRPNAFYSKCNQLGHEAVICKVKDQVKEVDAQVVDQEEEEEDQLFVATCFSGKESSESWLIDSGCTNHMTYDKEFFEELRDTEVKRVRIG

Query:  NGEHLEVKGKGTVTITS------------------------------YEVLFENEQCLIKDSSGKDLFNVKMKGKSFALNPMDVEQMAFISKASATEIWH
        NG+++ VKGKGT+ I S                              ++V FENE CLIKD++ +D+F VKMKGKSF+LNP++ EQ  F  K   T++WH
Subjt:  NGEHLEVKGKGTVTITS------------------------------YEVLFENEQCLIKDSSGKDLFNVKMKGKSFALNPMDVEQMAFISKASATEIWH

Query:  KRLGHFHHRGLLQM------------------------QSKK---------------------------------------------------QQKSEVA
        KR+GH+HH+GLLQ+                        Q++K                                                   + KSEVA
Subjt:  KRLGHFHHRGLLQM------------------------QSKK---------------------------------------------------QQKSEVA

Query:  GVFWKFKARVENESVCLIQTVRSDNGKEYTSETFNRFCDEAGIEHQLTAPYTPQQNGVSERRNRFIMEMTRCMLHEKDLPKCF
         VFWKFKARVENES C IQ VRSDNGKEY S  F++FC+++GI+HQLTAPYTPQQNGVSERRNR+IMEMTRCMLHEK LPK F
Subjt:  GVFWKFKARVENESVCLIQTVRSDNGKEYTSETFNRFCDEAGIEHQLTAPYTPQQNGVSERRNRFIMEMTRCMLHEKDLPKCF

XP_003613757.4 uncharacterized protein LOC11413243 [Medicago truncatula]1.9e-9951.4Show/hide
Query:  PPSR--KKKGHPPYKCWRRPNAFYSKCNQLGHEAVICKVKDQVKEVDAQVVDQEEE-EEDQLFVATCFSGKESSESWLIDSGCTNHMTYDKEFFEELRDT
        PP +   K GHPP++CWRRPNA  SKCNQ+GHEAVIC+ + + +E DAQV DQEEE EED+LFVATCFSG +SS+SWLIDSGCTNHMTYDKE F+ELR +
Subjt:  PPSR--KKKGHPPYKCWRRPNAFYSKCNQLGHEAVICKVKDQVKEVDAQVVDQEEE-EEDQLFVATCFSGKESSESWLIDSGCTNHMTYDKEFFEELRDT

Query:  EVKRVRIGNGEHLEVKGKGTVTITS------------------------------YEVLFENEQCLIKDSSGKDLFNVKMKGKSFALNPMDVEQMAFISK
        +  +VRIGNG+++ VKGKGT+ I S                              ++V FE++ CLIKD+SG+++F VKM+GKSF LNP++ +Q AF  K
Subjt:  EVKRVRIGNGEHLEVKGKGTVTITS------------------------------YEVLFENEQCLIKDSSGKDLFNVKMKGKSFALNPMDVEQMAFISK

Query:  ASATEIWHKRLGHFHHRGLLQMQSKK--------------------------------------------------------------------------
         S TE+WHKRLGH+HH+GLL +QSKK                                                                          
Subjt:  ASATEIWHKRLGHFHHRGLLQMQSKK--------------------------------------------------------------------------

Query:  ---QQKSEVAGVFWKFKARVENESVCLIQTVRSDNGKEYTSETFNRFCDEAGIEHQLTAPYTPQQNGVSERRNRFIMEMTRCMLHEKDLPKCF
           + KSEVAGVF KFK  VENES C IQ +RSDNGKEYTS  FN FC+EAGI+HQLTAPYTPQQNGVSERRNR+IMEMTRCMLHEK+LPK F
Subjt:  ---QQKSEVAGVFWKFKARVENESVCLIQTVRSDNGKEYTSETFNRFCDEAGIEHQLTAPYTPQQNGVSERRNRFIMEMTRCMLHEKDLPKCF

XP_016679117.1 uncharacterized protein LOC107898077 [Gossypium hirsutum]2.5e-10467.99Show/hide
Query:  RPNAFYSKCNQLGHEAVICKVKDQVKEVDAQVVDQEEEEEDQLFVATCFSGKESSESWLIDSGCTNHMTYDKEFFEELRDTEVKRVRIGNGEHLEVKGKG
        +P+A  SKCNQLGHEAVICKVK QV+EVDAQVVDQ  EEEDQLFV TCFSGKESSESWLIDSGCTNHMTYDKE FEELR+TEVKR+RIGNGE+LEVKGKG
Subjt:  RPNAFYSKCNQLGHEAVICKVKDQVKEVDAQVVDQEEEEEDQLFVATCFSGKESSESWLIDSGCTNHMTYDKEFFEELRDTEVKRVRIGNGEHLEVKGKG

Query:  TVTITSYE------------------------------VLFENEQCLIKDSSGKDLFNVKMKGKSFALNPMDVEQMAFISKASATEIWHKRLGHFHHRGL
        TV ITSYE                              VLFEN+QCLI+D++G+DLFNVKMKGKSF  NPM+ EQMAF S+   +       G+ ++   
Subjt:  TVTITSYE------------------------------VLFENEQCLIKDSSGKDLFNVKMKGKSFALNPMDVEQMAFISKASATEIWHKRLGHFHHRGL

Query:  LQMQSKK------QQKSEVAGVFWKFKARVENESVCLIQTVRSDNGKEYTSETFNRFCDEAGIEHQLTAPYTPQQNGVSERRNRFIMEMTRCMLHEKDLP
        +   ++       +QKSEVAGVFWKFKAR+ENES C+IQ +RSDNGKEYTSETFNRFC+EAGIEHQ TAPYTPQQNGVSERRN FIMEMTRCMLHEK+LP
Subjt:  LQMQSKK------QQKSEVAGVFWKFKARVENESVCLIQTVRSDNGKEYTSETFNRFCDEAGIEHQLTAPYTPQQNGVSERRNRFIMEMTRCMLHEKDLP

Query:  KCF
        K F
Subjt:  KCF

TrEMBL top hitse value%identityAlignment
A0A1U8ILX5 uncharacterized protein LOC1078980771.2e-10467.99Show/hide
Query:  RPNAFYSKCNQLGHEAVICKVKDQVKEVDAQVVDQEEEEEDQLFVATCFSGKESSESWLIDSGCTNHMTYDKEFFEELRDTEVKRVRIGNGEHLEVKGKG
        +P+A  SKCNQLGHEAVICKVK QV+EVDAQVVDQ  EEEDQLFV TCFSGKESSESWLIDSGCTNHMTYDKE FEELR+TEVKR+RIGNGE+LEVKGKG
Subjt:  RPNAFYSKCNQLGHEAVICKVKDQVKEVDAQVVDQEEEEEDQLFVATCFSGKESSESWLIDSGCTNHMTYDKEFFEELRDTEVKRVRIGNGEHLEVKGKG

Query:  TVTITSYE------------------------------VLFENEQCLIKDSSGKDLFNVKMKGKSFALNPMDVEQMAFISKASATEIWHKRLGHFHHRGL
        TV ITSYE                              VLFEN+QCLI+D++G+DLFNVKMKGKSF  NPM+ EQMAF S+   +       G+ ++   
Subjt:  TVTITSYE------------------------------VLFENEQCLIKDSSGKDLFNVKMKGKSFALNPMDVEQMAFISKASATEIWHKRLGHFHHRGL

Query:  LQMQSKK------QQKSEVAGVFWKFKARVENESVCLIQTVRSDNGKEYTSETFNRFCDEAGIEHQLTAPYTPQQNGVSERRNRFIMEMTRCMLHEKDLP
        +   ++       +QKSEVAGVFWKFKAR+ENES C+IQ +RSDNGKEYTSETFNRFC+EAGIEHQ TAPYTPQQNGVSERRN FIMEMTRCMLHEK+LP
Subjt:  LQMQSKK------QQKSEVAGVFWKFKARVENESVCLIQTVRSDNGKEYTSETFNRFCDEAGIEHQLTAPYTPQQNGVSERRNRFIMEMTRCMLHEKDLP

Query:  KCF
        K F
Subjt:  KCF

A0A5D3CMK4 Retrovirus-related Pol polyprotein from transposon TNT 1-941.3e-9850.39Show/hide
Query:  KKGHPPYKCWRRPNAFYSKCNQLGHEAVICKVKDQVKEVDAQVVDQEEEEEDQLFVATCFSGKESSESWLIDSGCTNHMTYDKEFFEELRDTEVKRVRIG
        K+GHPP+KCWRRPNA  +KCNQ+GHEAVIC+  +Q + V+A++  QEEEEEDQLFVATCF G ES+ESWLIDSGCTNHMT+DKE F++L+ T + +VRIG
Subjt:  KKGHPPYKCWRRPNAFYSKCNQLGHEAVICKVKDQVKEVDAQVVDQEEEEEDQLFVATCFSGKESSESWLIDSGCTNHMTYDKEFFEELRDTEVKRVRIG

Query:  NGEHLEVKGKGTVTITS------------------------------YEVLFENEQCLIKDSSGKDLFNVKMKGKSFALNPMDVEQMAFISKASATEIWH
        NG+++ VKGKGT+ I S                              ++V FENE CLIKD++ +D+F VKMKGKSF+LNP++ EQ  F  K   T++WH
Subjt:  NGEHLEVKGKGTVTITS------------------------------YEVLFENEQCLIKDSSGKDLFNVKMKGKSFALNPMDVEQMAFISKASATEIWH

Query:  KRLGHFHHRGLLQM------------------------QSKK---------------------------------------------------QQKSEVA
        KR+GH+HH+GLLQ+                        Q++K                                                   + KSEVA
Subjt:  KRLGHFHHRGLLQM------------------------QSKK---------------------------------------------------QQKSEVA

Query:  GVFWKFKARVENESVCLIQTVRSDNGKEYTSETFNRFCDEAGIEHQLTAPYTPQQNGVSERRNRFIMEMTRCMLHEKDLPKCF
         VFWKFKARVENES C IQ VRSDNGKEY S  F++FC+++GI+HQLTAPYTPQQNGVSERRNR+IMEMTRCMLHEK LPK F
Subjt:  GVFWKFKARVENESVCLIQTVRSDNGKEYTSETFNRFCDEAGIEHQLTAPYTPQQNGVSERRNRFIMEMTRCMLHEKDLPKCF

A0A5D3DBU0 Retrovirus-related Pol polyprotein from transposon TNT 1-941.3e-9850.39Show/hide
Query:  KKGHPPYKCWRRPNAFYSKCNQLGHEAVICKVKDQVKEVDAQVVDQEEEEEDQLFVATCFSGKESSESWLIDSGCTNHMTYDKEFFEELRDTEVKRVRIG
        K+GHPP+KCWRRPNA  +KCNQ+GHEAVIC+  +Q + V+A++  QEEEEEDQLFVATCF G ES+ESWLIDSGCTNHMT+DKE F++L+ T + +VRIG
Subjt:  KKGHPPYKCWRRPNAFYSKCNQLGHEAVICKVKDQVKEVDAQVVDQEEEEEDQLFVATCFSGKESSESWLIDSGCTNHMTYDKEFFEELRDTEVKRVRIG

Query:  NGEHLEVKGKGTVTITS------------------------------YEVLFENEQCLIKDSSGKDLFNVKMKGKSFALNPMDVEQMAFISKASATEIWH
        NG+++ VKGKGT+ I S                              ++V FENE CLIKD++ +D+F VKMKGKSF+LNP++ EQ  F  K   T++WH
Subjt:  NGEHLEVKGKGTVTITS------------------------------YEVLFENEQCLIKDSSGKDLFNVKMKGKSFALNPMDVEQMAFISKASATEIWH

Query:  KRLGHFHHRGLLQM------------------------QSKK---------------------------------------------------QQKSEVA
        KR+GH+HH+GLLQ+                        Q++K                                                   + KSEVA
Subjt:  KRLGHFHHRGLLQM------------------------QSKK---------------------------------------------------QQKSEVA

Query:  GVFWKFKARVENESVCLIQTVRSDNGKEYTSETFNRFCDEAGIEHQLTAPYTPQQNGVSERRNRFIMEMTRCMLHEKDLPKCF
         VFWKFKARVENES C IQ VRSDNGKEY S  F++FC+++GI+HQLTAPYTPQQNGVSERRNR+IMEMTRCMLHEK LPK F
Subjt:  GVFWKFKARVENESVCLIQTVRSDNGKEYTSETFNRFCDEAGIEHQLTAPYTPQQNGVSERRNRFIMEMTRCMLHEKDLPKCF

A0A5D3DMJ1 Retrovirus-related Pol polyprotein from transposon TNT 1-941.3e-9850.39Show/hide
Query:  KKGHPPYKCWRRPNAFYSKCNQLGHEAVICKVKDQVKEVDAQVVDQEEEEEDQLFVATCFSGKESSESWLIDSGCTNHMTYDKEFFEELRDTEVKRVRIG
        K+GHPP+KCWRRPNA  +KCNQ+GHEAVIC+  +Q + V+A++  QEEEEEDQLFVATCF G ES+ESWLIDSGCTNHMT+DKE F++L+ T + +VRIG
Subjt:  KKGHPPYKCWRRPNAFYSKCNQLGHEAVICKVKDQVKEVDAQVVDQEEEEEDQLFVATCFSGKESSESWLIDSGCTNHMTYDKEFFEELRDTEVKRVRIG

Query:  NGEHLEVKGKGTVTITS------------------------------YEVLFENEQCLIKDSSGKDLFNVKMKGKSFALNPMDVEQMAFISKASATEIWH
        NG+++ VKGKGT+ I S                              ++V FENE CLIKD++ +D+F VKMKGKSF+LNP++ EQ  F  K   T++WH
Subjt:  NGEHLEVKGKGTVTITS------------------------------YEVLFENEQCLIKDSSGKDLFNVKMKGKSFALNPMDVEQMAFISKASATEIWH

Query:  KRLGHFHHRGLLQM------------------------QSKK---------------------------------------------------QQKSEVA
        KR+GH+HH+GLLQ+                        Q++K                                                   + KSEVA
Subjt:  KRLGHFHHRGLLQM------------------------QSKK---------------------------------------------------QQKSEVA

Query:  GVFWKFKARVENESVCLIQTVRSDNGKEYTSETFNRFCDEAGIEHQLTAPYTPQQNGVSERRNRFIMEMTRCMLHEKDLPKCF
         VFWKFKARVENES C IQ VRSDNGKEY S  F++FC+++GI+HQLTAPYTPQQNGVSERRNR+IMEMTRCMLHEK LPK F
Subjt:  GVFWKFKARVENESVCLIQTVRSDNGKEYTSETFNRFCDEAGIEHQLTAPYTPQQNGVSERRNRFIMEMTRCMLHEKDLPKCF

A0A5D3E2V7 Retrovirus-related Pol polyprotein from transposon TNT 1-943.8e-9850.13Show/hide
Query:  KKGHPPYKCWRRPNAFYSKCNQLGHEAVICKVKDQVKEVDAQVVDQEEEEEDQLFVATCFSGKESSESWLIDSGCTNHMTYDKEFFEELRDTEVKRVRIG
        K+GHPP+KCWRRPNA  +KCNQ+GHEAVIC+  +Q + V+A++  QEEEEEDQLFVATCF G ES+ESWLIDSGCTNHMT+DKE F++L+ T + +VRIG
Subjt:  KKGHPPYKCWRRPNAFYSKCNQLGHEAVICKVKDQVKEVDAQVVDQEEEEEDQLFVATCFSGKESSESWLIDSGCTNHMTYDKEFFEELRDTEVKRVRIG

Query:  NGEHLEVKGKGTVTITS------------------------------YEVLFENEQCLIKDSSGKDLFNVKMKGKSFALNPMDVEQMAFISKASATEIWH
        NG+++ VKGKGT+ I S                              ++V FENE CLIKD++ +D+F VKMKGKSF+LNP++ +Q  F  K   T++WH
Subjt:  NGEHLEVKGKGTVTITS------------------------------YEVLFENEQCLIKDSSGKDLFNVKMKGKSFALNPMDVEQMAFISKASATEIWH

Query:  KRLGHFHHRGLLQM------------------------QSKK---------------------------------------------------QQKSEVA
        KR+GH+HH+GLLQ+                        Q++K                                                   + KSEVA
Subjt:  KRLGHFHHRGLLQM------------------------QSKK---------------------------------------------------QQKSEVA

Query:  GVFWKFKARVENESVCLIQTVRSDNGKEYTSETFNRFCDEAGIEHQLTAPYTPQQNGVSERRNRFIMEMTRCMLHEKDLPKCF
         VFWKFKARVENES C IQ VRSDNGKEY S  F++FC+++GI+HQLTAPYTPQQNGVSERRNR+IMEMTRCMLHEK LPK F
Subjt:  GVFWKFKARVENESVCLIQTVRSDNGKEYTSETFNRFCDEAGIEHQLTAPYTPQQNGVSERRNRFIMEMTRCMLHEKDLPKCF

SwissProt top hitse value%identityAlignment
P04146 Copia protein1.3e-1040.82Show/hide
Query:  KSEVAGVFWKFKARVENESVCLIQTVRSDNGKEYTSETFNRFCDEAGIEHQLTAPYTPQQNGVSERRNRFIMEMTRCMLHEKDLPKCF---KICTAVY
        KS+V  +F  F A+ E      +  +  DNG+EY S    +FC + GI + LT P+TPQ NGVSER  R I E  R M+    L K F    + TA Y
Subjt:  KSEVAGVFWKFKARVENESVCLIQTVRSDNGKEYTSETFNRFCDEAGIEHQLTAPYTPQQNGVSERRNRFIMEMTRCMLHEKDLPKCF---KICTAVY

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-945.5e-1734.63Show/hide
Query:  KGTVTITSYEVLFENEQCLIKDSSGKDLFNVKMKGKSFALNPMDVEQM-------AFISKASATEIWHKRLGHFHHRGLLQMQSKKQQKSEVAGVFWKFK
        KGT        LF  +  +   +S +   N+     S    PM++E M        FI  AS  ++W   L               + K +V  VF KF 
Subjt:  KGTVTITSYEVLFENEQCLIKDSSGKDLFNVKMKGKSFALNPMDVEQM-------AFISKASATEIWHKRLGHFHHRGLLQMQSKKQQKSEVAGVFWKFK

Query:  ARVENESVCLIQTVRSDNGKEYTSETFNRFCDEAGIEHQLTAPYTPQQNGVSERRNRFIMEMTRCMLHEKDLPKCF---KICTAVYRGKKNLKPKEPALF
        A VE E+   ++ +RSDNG EYTS  F  +C   GI H+ T P TPQ NGV+ER NR I+E  R ML    LPK F    + TA Y    N  P  P  F
Subjt:  ARVENESVCLIQTVRSDNGKEYTSETFNRFCDEAGIEHQLTAPYTPQQNGVSERRNRFIMEMTRCMLHEKDLPKCF---KICTAVYRGKKNLKPKEPALF

Query:  KRNKR
        +  +R
Subjt:  KRNKR

P22382 Gag-Pol polyprotein3.7e-0537.5Show/hide
Query:  IQTVRSDNGKEYTSETFNRFCDEAGIEHQLTAPYTPQQNGVSERRNRFIMEMTRCMLHEKDLPKCFKICTAV
        I  + +DNG  +TS+     C   GIEH    PY PQ  GV E +N+++ E     L EK    C ++ TAV
Subjt:  IQTVRSDNGKEYTSETFNRFCDEAGIEHQLTAPYTPQQNGVSERRNRFIMEMTRCMLHEKDLPKCFKICTAV

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE14.6e-0836.67Show/hide
Query:  QQKSEVAGVFWKFKARVENESVCLIQTVRSDNGKEYTSETFNRFCDEAGIEHQLTAPYTPQQNGVSERRNRFIMEMTRCMLHEKDLPKCF
        +QKS+V   F  FK  +EN     I T  SDNG E+ +     +  + GI H  + P+TP+ NG+SER++R I+E    +L    +PK +
Subjt:  QQKSEVAGVFWKFKARVENESVCLIQTVRSDNGKEYTSETFNRFCDEAGIEHQLTAPYTPQQNGVSERRNRFIMEMTRCMLHEKDLPKCF

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.4e-0938.89Show/hide
Query:  QQKSEVAGVFWKFKARVENESVCLIQTVRSDNGKEYTSETFNRFCDEAGIEHQLTAPYTPQQNGVSERRNRFIMEMTRCMLHEKDLPKCF
        +QKS+V   F  FK+ VEN     I T+ SDNG E+       +  + GI H  + P+TP+ NG+SER++R I+EM   +L    +PK +
Subjt:  QQKSEVAGVFWKFKARVENESVCLIQTVRSDNGKEYTSETFNRFCDEAGIEHQLTAPYTPQQNGVSERRNRFIMEMTRCMLHEKDLPKCF

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAAAATCAATTTGTTGAAATCGAAGGACGGTCCGGTTCATGTAAAGTTTGTTATTTTGATTAATAACCATGTTAATAAAATTTCAGATGGAAATGGAGGACAAAA
GTTGAGGTCAAGGAATCCAACTCTGGTTGCTACATTCAACCCTCCATCACGTAAGAAGAAAGGTCATCCACCATACAAGTGTTGGAGAAGACCTAACGCCTTCTACTCCA
AATGCAATCAACTTGGACATGAAGCCGTGATCTGTAAAGTCAAAGATCAGGTGAAAGAAGTAGATGCACAGGTAGTTGATCAAGAAGAGGAAGAAGAAGATCAATTGTTT
GTGGCCACTTGTTTCTCAGGCAAAGAATCAAGCGAGAGCTGGTTGATTGACAGTGGGTGCACAAATCATATGACGTATGACAAGGAGTTTTTTGAGGAATTAAGAGACAC
TGAAGTCAAGAGAGTGAGGATTGGCAACGGTGAACACTTGGAAGTCAAAGGAAAAGGCACAGTAACTATAACAAGTTATGAAGTGTTGTTTGAGAATGAACAGTGTTTGA
TCAAAGATTCTAGTGGAAAAGACTTGTTCAATGTCAAAATGAAAGGAAAAAGTTTTGCTCTAAATCCGATGGATGTAGAGCAGATGGCCTTTATATCCAAAGCTAGTGCC
ACTGAGATTTGGCACAAAAGACTTGGGCACTTTCATCATCGAGGTTTGCTTCAGATGCAGTCAAAGAAGCAGCAAAAGTCAGAGGTTGCGGGTGTATTTTGGAAATTCAA
GGCTAGAGTTGAGAATGAAAGTGTATGCTTGATTCAAACGGTAAGATCAGATAATGGCAAGGAGTACACTTCAGAAACTTTTAACAGGTTTTGTGATGAGGCTGGAATTG
AACATCAGTTGACAGCACCATACACTCCTCAACAGAATGGCGTCAGTGAAAGGAGGAATAGATTCATAATGGAGATGACGAGATGCATGCTTCATGAGAAGGATCTTCCA
AAATGTTTTAAGATATGTACTGCTGTGTACCGAGGAAAGAAGAACTTAAAACCCAAAGAACCTGCCTTATTCAAAAGGAACAAAAGGAACATCTAA
mRNA sequenceShow/hide mRNA sequence
CTTATTCGGACGCCAGCTGTCTCAGCTCCCGCGGGGATCATATATATCCCTCCCGCACTCATACTCTCTTCTTCAGGACACATTCTCACACTAGAACGTTCATTGCCGAA
TTCAACCGCTAGATAATTACCAAGCAATCGGAGGAAGAGAGCAGAATCGAAAGGAGTTTATCGCCTGATCCCGATGATGAAAAATAGAGAAGAGAAGAGAACGGCGAACT
CTTATGTCATTGCGATTGGTTCCGATAACAGAGTGCGGTAGAACAAAGCAGTTGCTCTTGATGAAGCGATTGCTTGGGCAAAAGAAAAAACAGTTGGTCCTGTCAATTCA
GGCCGGTGGGATTTTCGCATCTGCTAGGAATACTGGTCATGATGATGAACGAACCATATGAGATATATACTAGTGTCTGGATCAATTTTTGAGACTGATTTGAGTCTAGG
GCAAAATGGTGAAAATCAATTTGTTGAAATCGAAGGACGGTCCGGTTCATGTAAAGTTTGTTATTTTGATTAATAACCATGTTAATAAAATTTCAGATGGAAATGGAGGA
CAAAAGTTGAGGTCAAGGAATCCAACTCTGGTTGCTACATTCAACCCTCCATCACGTAAGAAGAAAGGTCATCCACCATACAAGTGTTGGAGAAGACCTAACGCCTTCTA
CTCCAAATGCAATCAACTTGGACATGAAGCCGTGATCTGTAAAGTCAAAGATCAGGTGAAAGAAGTAGATGCACAGGTAGTTGATCAAGAAGAGGAAGAAGAAGATCAAT
TGTTTGTGGCCACTTGTTTCTCAGGCAAAGAATCAAGCGAGAGCTGGTTGATTGACAGTGGGTGCACAAATCATATGACGTATGACAAGGAGTTTTTTGAGGAATTAAGA
GACACTGAAGTCAAGAGAGTGAGGATTGGCAACGGTGAACACTTGGAAGTCAAAGGAAAAGGCACAGTAACTATAACAAGTTATGAAGTGTTGTTTGAGAATGAACAGTG
TTTGATCAAAGATTCTAGTGGAAAAGACTTGTTCAATGTCAAAATGAAAGGAAAAAGTTTTGCTCTAAATCCGATGGATGTAGAGCAGATGGCCTTTATATCCAAAGCTA
GTGCCACTGAGATTTGGCACAAAAGACTTGGGCACTTTCATCATCGAGGTTTGCTTCAGATGCAGTCAAAGAAGCAGCAAAAGTCAGAGGTTGCGGGTGTATTTTGGAAA
TTCAAGGCTAGAGTTGAGAATGAAAGTGTATGCTTGATTCAAACGGTAAGATCAGATAATGGCAAGGAGTACACTTCAGAAACTTTTAACAGGTTTTGTGATGAGGCTGG
AATTGAACATCAGTTGACAGCACCATACACTCCTCAACAGAATGGCGTCAGTGAAAGGAGGAATAGATTCATAATGGAGATGACGAGATGCATGCTTCATGAGAAGGATC
TTCCAAAATGTTTTAAGATATGTACTGCTGTGTACCGAGGAAAGAAGAACTTAAAACCCAAAGAACCTGCCTTATTCAAAAGGAACAAAAGGAACATCTAA
Protein sequenceShow/hide protein sequence
MVKINLLKSKDGPVHVKFVILINNHVNKISDGNGGQKLRSRNPTLVATFNPPSRKKKGHPPYKCWRRPNAFYSKCNQLGHEAVICKVKDQVKEVDAQVVDQEEEEEDQLF
VATCFSGKESSESWLIDSGCTNHMTYDKEFFEELRDTEVKRVRIGNGEHLEVKGKGTVTITSYEVLFENEQCLIKDSSGKDLFNVKMKGKSFALNPMDVEQMAFISKASA
TEIWHKRLGHFHHRGLLQMQSKKQQKSEVAGVFWKFKARVENESVCLIQTVRSDNGKEYTSETFNRFCDEAGIEHQLTAPYTPQQNGVSERRNRFIMEMTRCMLHEKDLP
KCFKICTAVYRGKKNLKPKEPALFKRNKRNI