; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmaCh12G002020 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh12G002020
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionRibosomal RNA small subunit methyltransferase A
Genome locationCma_Chr12:955584..959011
RNA-Seq ExpressionCmaCh12G002020
SyntenyCmaCh12G002020
Gene Ontology termsGO:0032259 - methylation (biological process)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585342.1 hypothetical protein SDJN03_18075, partial [Cucurbita argyrosperma subsp. sororia]1.4e-9298.82Show/hide
Query:  MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSAAGNINDSFSAESKKYMEQWLSSLQSC
        WSEPHGPGF SDDETDNSFAVLVPCYGRVYNDFVDETKNSILSA+GNINDSFSAESKKYMEQWLSSLQSC
Subjt:  WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSAAGNINDSFSAESKKYMEQWLSSLQSC
XP_004152600.1 uncharacterized protein LOC101213956 [Cucumis sativus]1.2e-8591.81Show/hide
Query:  MSVAFPQLSWWSWSGKHKEPRTSN-GSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWW WSGKHKEPR+SN GSA NASLDT  RE DTLKFPL NGAN+SSSSRRV+RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MSVAFPQLSWWSWSGKHKEPRTSN-GSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSAAGNINDSFSAESKKYMEQWLSSLQSC
        GWSEPHGPGFQSDDE+DNSFAVLVPCYGR+YNDFVDETKNSILSA GNINDSFSAESKKYMEQWLSSLQ+C
Subjt:  GWSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSAAGNINDSFSAESKKYMEQWLSSLQSC
XP_022951746.1 uncharacterized protein LOC111454487 [Cucurbita moschata]3.6e-9399.41Show/hide
Query:  MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSAAGNINDSFSAESKKYMEQWLSSLQSC
        WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSA+GNINDSFSAESKKYMEQWLSSLQSC
Subjt:  WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSAAGNINDSFSAESKKYMEQWLSSLQSC
XP_023001877.1 uncharacterized protein LOC111495931 [Cucurbita maxima]1.6e-93100Show/hide
Query:  MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSAAGNINDSFSAESKKYMEQWLSSLQSC
        WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSAAGNINDSFSAESKKYMEQWLSSLQSC
Subjt:  WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSAAGNINDSFSAESKKYMEQWLSSLQSC
XP_038886443.1 uncharacterized protein LOC120076637 [Benincasa hispida]7.3e-8692.4Show/hide
Query:  MSVAFPQLSWWSWSGKHKEPRTSN-GSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWW WSGKHKEPR+SN GSA NASLDT  RE DTLKFPL NGANISSSSRRV+RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MSVAFPQLSWWSWSGKHKEPRTSN-GSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSAAGNINDSFSAESKKYMEQWLSSLQSC
        GWSEPHGPGFQSDDE+DNSFAVLVPCYGR+YNDFVDETKNSILSA GNINDSFSAESKKYMEQWLSSLQ+C
Subjt:  GWSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSAAGNINDSFSAESKKYMEQWLSSLQSC
TrEMBL top hitse value%identityAlignment
A0A1S3BB05 uncharacterized protein LOC1034881216.0e-8691.81Show/hide
Query:  MSVAFPQLSWWSWSGKHKEPRTSN-GSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWW WSGKHKEPR+SN GSA NASLDT  RE DTLKFPL NGANISSSSRRV+RKWHSREERK+DREYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MSVAFPQLSWWSWSGKHKEPRTSN-GSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSAAGNINDSFSAESKKYMEQWLSSLQSC
        GWSEPHGPGFQSDDE+DNSFAVLVPCYGR+YNDFVDETKNSILSA GNINDSFSAESKKYMEQWLSSLQ+C
Subjt:  GWSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSAAGNINDSFSAESKKYMEQWLSSLQSC
A0A6J1BVP6 uncharacterized protein LOC111005141 isoform X25.1e-8590Show/hide
Query:  MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        M+VAFPQLSWW WSGK+KEPR+SNGS  NASLDT IREPDTLKFPL NGANISSSSRRV+RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSAAGNINDSFSAESKKYMEQWLSSLQSC
        WSEP+GPGFQSDD+ DNSFAVLVPCYG +YNDFVDETKNSILSA GNINDSFSA+SKKYMEQWLSSLQ+C
Subjt:  WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSAAGNINDSFSAESKKYMEQWLSSLQSC
A0A6J1GID2 uncharacterized protein LOC1114544871.7e-9399.41Show/hide
Query:  MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSAAGNINDSFSAESKKYMEQWLSSLQSC
        WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSA+GNINDSFSAESKKYMEQWLSSLQSC
Subjt:  WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSAAGNINDSFSAESKKYMEQWLSSLQSC
A0A6J1K730 uncharacterized protein LOC111492231 isoform X21.4e-7986.55Show/hide
Query:  MSVAFPQLSWWSWSGKHKEPRTSN-GSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWW  SGKHKEP++SN GSA NASLDT  RE DTLKF L NGANISSSSRRV+RKWHSREERKIDREYDIVLVPSDGGC+SGSESDDSDWSI
Subjt:  MSVAFPQLSWWSWSGKHKEPRTSN-GSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSAAGNINDSFSAESKKYMEQWLSSLQSC
        GWSEPHGPGFQSDD++DNSFAVLVPCY R+YNDFVDETK S+LSA GNI+DSFS ESKKYMEQWLSSLQ+C
Subjt:  GWSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSAAGNINDSFSAESKKYMEQWLSSLQSC
A0A6J1KME1 uncharacterized protein LOC1114959317.9e-94100Show/hide
Query:  MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSAAGNINDSFSAESKKYMEQWLSSLQSC
        WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSAAGNINDSFSAESKKYMEQWLSSLQSC
Subjt:  WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSAAGNINDSFSAESKKYMEQWLSSLQSC
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G38060.1 unknown protein1.8e-1051.47Show/hide
Query:  SGSES------DDSDWSIGWSEPHGPGFQSDDE-TDNSFAVLVPCYGRVYNDFVDETKNSILSAAGNI
        SGSES      D  +WS+GW+EPHGP FQSDDE  D  F VLVPCY R   +      N +LSA  N+
Subjt:  SGSES------DDSDWSIGWSEPHGPGFQSDDE-TDNSFAVLVPCYGRVYNDFVDETKNSILSAAGNI
AT4G38060.2 unknown protein1.0e-1652.27Show/hide
Query:  SGSES------DDSDWSIGWSEPHGPGFQSDDE-TDNSFAVLVPCYGRVYNDFVDETKNSILSAAGNINDSFSAESKKYMEQWLSSLQ
        SGSES      D  +WS+GW+EPHGP FQSDDE  D  F VLVPCY R   +      N +LSA  N+ +    + K YMEQWLSSLQ
Subjt:  SGSES------DDSDWSIGWSEPHGPGFQSDDE-TDNSFAVLVPCYGRVYNDFVDETKNSILSAAGNINDSFSAESKKYMEQWLSSLQ
AT5G65480.1 unknown protein1.3e-1634.13Show/hide
Query:  MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        M+V+FP+L  W   G + + R    S    S       P   K   +   + SSS ++ +R W  R       E D +      G V   E DD +WSIG
Subjt:  MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSAAGNINDSFSAESKKYMEQWLSSL
        W EPHGPGF+++D+    F VLVP Y +V +   ++  N   S A        A   K MEQWLSS+
Subjt:  WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSAAGNINDSFSAESKKYMEQWLSSL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGTGGCATTTCCCCAACTCTCCTGGTGGTCGTGGAGCGGGAAGCATAAAGAACCTCGAACCTCTAATGGATCCGCTTTTAATGCTTCACTAGATACAGTCATTCG
GGAACCGGATACTCTAAAATTTCCTTTAGCAAATGGTGCCAACATATCATCCTCGTCTAGAAGGGTGAGGCGGAAATGGCATAGTCGAGAAGAAAGGAAAATTGATAGGG
AATACGACATTGTTCTTGTTCCATCTGATGGAGGATGTGTTTCAGGGTCAGAATCTGATGATTCGGATTGGTCAATTGGATGGTCAGAACCCCATGGACCTGGATTCCAG
AGCGATGATGAAACAGACAACAGTTTTGCAGTACTGGTTCCATGTTATGGACGCGTTTACAATGATTTTGTGGATGAAACAAAGAACAGTATCCTAAGTGCTGCTGGGAA
CATCAACGATAGCTTTTCTGCAGAGAGCAAGAAATATATGGAACAATGGCTGTCCTCTCTTCAGAGCTGCTGA
mRNA sequenceShow/hide mRNA sequence
TCAAAAAAGCGTTTCATCTTTAACTTCTTCAATTTTGACGATCAGTTGGCTGAAATTTTCGGTGTTCAATTTGAATTCGTCGGCCTCTGAATCGTCCATTTGCAGAAGAC
CGTAGCCATTGGAGGTTTTGCTTTGAGGTTTGTTCGTTAAGGAAAAAAAAAACTGCTCCATTTCACAACCGTGGCCTTGGAATCTACCTGTAATTAGCGAGTTTTTCATT
GGAGAGACTTGTTATTCATTAGTAAAGAAAATTGAATTCACACATGTCTGTGGCATTTCCCCAACTCTCCTGGTGGTCGTGGAGCGGGAAGCATAAAGAACCTCGAACCT
CTAATGGATCCGCTTTTAATGCTTCACTAGATACAGTCATTCGGGAACCGGATACTCTAAAATTTCCTTTAGCAAATGGTGCCAACATATCATCCTCGTCTAGAAGGGTG
AGGCGGAAATGGCATAGTCGAGAAGAAAGGAAAATTGATAGGGAATACGACATTGTTCTTGTTCCATCTGATGGAGGATGTGTTTCAGGGTCAGAATCTGATGATTCGGA
TTGGTCAATTGGATGGTCAGAACCCCATGGACCTGGATTCCAGAGCGATGATGAAACAGACAACAGTTTTGCAGTACTGGTTCCATGTTATGGACGCGTTTACAATGATT
TTGTGGATGAAACAAAGAACAGTATCCTAAGTGCTGCTGGGAACATCAACGATAGCTTTTCTGCAGAGAGCAAGAAATATATGGAACAATGGCTGTCCTCTCTTCAGAGC
TGCTGATGCACAGGGTTTATAATTGCTGTACGCATCGGATGCTAATGCCCTGTTCCAAGACGAAAGCATTCTGTGATCTTTAGCTATTCAAAAATTACAAAAATATGGAA
AAAAGAAAAGAAAAAAGATTGTAAAAGTCTATCTATTCTGGCTTCGTTTGATATACAACTAAGAAGCAAATTGGATGAAAAGATTGGATCCATTGATTCCAATCAGTGGG
TGCAGGTTGTGCAGGTCGAATCTTTTCCATTCTTTTGAGCATGCTTTTAAGAAGAGTGAGTTGAAAAAAGTATGATCTTATCTGGTGGGATGAAGCTTGTTAAAATGGGA
TGTAAATACTTCGAGACTCCTTTGTAAATATGGAAGGGAGAAAGGAGGAAAGGGTTGAGCCAAGCAGCCGAGGCTTGGAGAAAAAGAGCATTAAAAAAGAGGTGGAAGTG
CAGGTATGGTGTAATTCTTTGAAGTTCAGTTCATGTATAAAGTGGGAAGTCTCAACTTTAATTGATCTGAACGTTGCTGTAAATAGTGACTCATTTGTATGCATTGTGTG
ATCTGAGTGGGTTTGGTTCATTTAAACGTTGCTGTATATGGTGACCTCATTTGTAAAATTTGTTGCACATAGTAACACAGCTGTGCACCCGTGTAATGTCTCTCCCTATT
CAATGTAATATTCTTTAGAAACTCTATTTTAATAAGCTAAAAAGTCTACATTAAATAATAAAATCAACATTTTGATGAAAA
Protein sequenceShow/hide protein sequence
MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQ
SDDETDNSFAVLVPCYGRVYNDFVDETKNSILSAAGNINDSFSAESKKYMEQWLSSLQSC