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CmaCh12G007740 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh12G007740
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionCytochrome b559 subunit beta
Genome locationCma_Chr12:5164277..5164487
RNA-Seq ExpressionCmaCh12G007740
SyntenyCmaCh12G007740
Gene Ontology termsGO:0009767 - photosynthetic electron transport chain (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0009539 - photosystem II reaction center (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0020037 - heme binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR013081 - Photosystem II cytochrome b559, N-terminal
IPR037266 - Photosystem II PsbL superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GGW27698.1 hypothetical protein GCM10010294_70970 [Streptomyces griseoloalbus]5.4e-2178.26Show/hide
Query:  MTIDQTYPILTVRWLGGLVVHGLAVPT---GQYQQCSSSNEKPNPNYGALTQSNPNEHDVELNRTCLYW
        MTID+TYPI TVRW   L VHGLAVPT   GQYQQCSSSN+KPNPNY A+TQSNPNE +VELNRT LYW
Subjt:  MTIDQTYPILTVRWLGGLVVHGLAVPT---GQYQQCSSSNEKPNPNYGALTQSNPNEHDVELNRTCLYW

KAF4348565.1 hypothetical protein F8388_000244 [Cannabis sativa]2.6e-1569.7Show/hide
Query:  MTIDQTYPILTVRWLGGLVVHGLAVPTGQYQQCSSSNEKPNPNYGALTQSNPNEHDVELNRTCLYW
        MTID+TYPI TVRW   L VHGLAVPT  +    SSN+KPNPN+ A TQSNPNE +VELNRT LYW
Subjt:  MTIDQTYPILTVRWLGGLVVHGLAVPTGQYQQCSSSNEKPNPNYGALTQSNPNEHDVELNRTCLYW

RHN59720.1 putative photosystem II PsbL, photosystem II cytochrome b559 [Medicago truncatula]5.1e-1974.29Show/hide
Query:  MTIDQTYPILTVRWLGGLVVHGLAVPT----GQYQQCSSSNEKPNPNYGALTQSNPNEHDVELNRTCLYW
        MTID+TYPI TVRW   L VHGLAVP      QYQQCSSSN+KPNPNY A TQSNPNE +VELNRT LYW
Subjt:  MTIDQTYPILTVRWLGGLVVHGLAVPT----GQYQQCSSSNEKPNPNYGALTQSNPNEHDVELNRTCLYW

RWR97904.1 cytochrome b559 subunit alpha [Cinnamomum micranthum f. kanehirae]9.6e-1875.76Show/hide
Query:  MTIDQTYPILTVRWLGGLVVHGLAVPTGQYQQCSSSNEKPNPNYGALTQSNPNEHDVELNRTCLYW
        MTID+TYPI TVRW   L VHGLAVPT    QCSSSN+KPNPNY A TQSNPNE  VELNRT LYW
Subjt:  MTIDQTYPILTVRWLGGLVVHGLAVPTGQYQQCSSSNEKPNPNYGALTQSNPNEHDVELNRTCLYW

RXI09994.1 hypothetical protein DVH24_037515 [Malus domestica]1.4e-2180.3Show/hide
Query:  MTIDQTYPILTVRWLGGLVVHGLAVPTGQYQQCSSSNEKPNPNYGALTQSNPNEHDVELNRTCLYW
        MTID+TYPI TVRW   L VHGLAVPTGQYQQCSSSN+KPNPN+ A TQSNPNE  VELNRT LYW
Subjt:  MTIDQTYPILTVRWLGGLVVHGLAVPTGQYQQCSSSNEKPNPNYGALTQSNPNEHDVELNRTCLYW

TrEMBL top hitse value%identityAlignment
A0A0V0HJS1 Cytochrome b559 subunit alpha4.2e-1973.24Show/hide
Query:  MTIDQTYPILTVRWLGGLVVHGLAVPT-----GQYQQCSSSNEKPNPNYGALTQSNPNEHDVELNRTCLYW
        MTID+TYPI TVRW   L VHGLAVPT      QYQQCSSSN+K NPNY A+TQSNPNE +VELNRT LYW
Subjt:  MTIDQTYPILTVRWLGGLVVHGLAVPT-----GQYQQCSSSNEKPNPNYGALTQSNPNEHDVELNRTCLYW

A0A396I2A3 Putative photosystem II PsbL, photosystem II cytochrome b5592.5e-1974.29Show/hide
Query:  MTIDQTYPILTVRWLGGLVVHGLAVPT----GQYQQCSSSNEKPNPNYGALTQSNPNEHDVELNRTCLYW
        MTID+TYPI TVRW   L VHGLAVP      QYQQCSSSN+KPNPNY A TQSNPNE +VELNRT LYW
Subjt:  MTIDQTYPILTVRWLGGLVVHGLAVPT----GQYQQCSSSNEKPNPNYGALTQSNPNEHDVELNRTCLYW

A0A3S3N9C7 Cytochrome b559 subunit alpha4.7e-1875.76Show/hide
Query:  MTIDQTYPILTVRWLGGLVVHGLAVPTGQYQQCSSSNEKPNPNYGALTQSNPNEHDVELNRTCLYW
        MTID+TYPI TVRW   L VHGLAVPT    QCSSSN+KPNPNY A TQSNPNE  VELNRT LYW
Subjt:  MTIDQTYPILTVRWLGGLVVHGLAVPTGQYQQCSSSNEKPNPNYGALTQSNPNEHDVELNRTCLYW

A0A452YMH1 Cytochrom_B559 domain-containing protein7.9e-1869.01Show/hide
Query:  MTIDQTYPILTVRWLGGLVVHGLAVPT-----GQYQQCSSSNEKPNPNYGALTQSNPNEHDVELNRTCLYW
        MTID+TYPI TVRW   L +HGLAVPT      QYQQCSSSN+K N NY  +TQSNPNE +VELNRT LYW
Subjt:  MTIDQTYPILTVRWLGGLVVHGLAVPT-----GQYQQCSSSNEKPNPNYGALTQSNPNEHDVELNRTCLYW

A0A498KUB4 Cytochrom_B559 domain-containing protein6.9e-2280.3Show/hide
Query:  MTIDQTYPILTVRWLGGLVVHGLAVPTGQYQQCSSSNEKPNPNYGALTQSNPNEHDVELNRTCLYW
        MTID+TYPI TVRW   L VHGLAVPTGQYQQCSSSN+KPNPN+ A TQSNPNE  VELNRT LYW
Subjt:  MTIDQTYPILTVRWLGGLVVHGLAVPTGQYQQCSSSNEKPNPNYGALTQSNPNEHDVELNRTCLYW

SwissProt top hitse value%identityAlignment
P60248 Cytochrome b559 subunit beta6.3e-0477.78Show/hide
Query:  MTIDQTYPILTVRWLGGLVVHGLAVPT
        MTID+TYPI TVRW   L VHGLAVPT
Subjt:  MTIDQTYPILTVRWLGGLVVHGLAVPT

P60249 Cytochrome b559 subunit beta6.3e-0477.78Show/hide
Query:  MTIDQTYPILTVRWLGGLVVHGLAVPT
        MTID+TYPI TVRW   L VHGLAVPT
Subjt:  MTIDQTYPILTVRWLGGLVVHGLAVPT

Q67HN7 Cytochrome b559 subunit beta6.3e-0477.78Show/hide
Query:  MTIDQTYPILTVRWLGGLVVHGLAVPT
        MTID+TYPI TVRW   L VHGLAVPT
Subjt:  MTIDQTYPILTVRWLGGLVVHGLAVPT

Q6EYW3 Cytochrome b559 subunit beta6.3e-0477.78Show/hide
Query:  MTIDQTYPILTVRWLGGLVVHGLAVPT
        MTID+TYPI TVRW   L VHGLAVPT
Subjt:  MTIDQTYPILTVRWLGGLVVHGLAVPT

Q7J1C5 Cytochrome b559 subunit beta6.3e-0477.78Show/hide
Query:  MTIDQTYPILTVRWLGGLVVHGLAVPT
        MTID+TYPI TVRW   L VHGLAVPT
Subjt:  MTIDQTYPILTVRWLGGLVVHGLAVPT

Arabidopsis top hitse value%identityAlignment
ATCG00570.1 photosystem II reaction center protein F4.5e-0577.78Show/hide
Query:  MTIDQTYPILTVRWLGGLVVHGLAVPT
        MTID+TYPI TVRW   L VHGLAVPT
Subjt:  MTIDQTYPILTVRWLGGLVVHGLAVPT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTATCGATCAAACTTATCCTATTTTGACAGTGCGATGGTTGGGGGGGTTAGTTGTTCACGGACTAGCTGTACCTACCGGTCAATATCAGCAATGCAGTTCATCCAA
CGAGAAACCTAATCCGAATTATGGAGCTCTGACACAATCAAATCCGAATGAACACGATGTTGAATTGAATCGTACCTGTCTTTACTGG
mRNA sequenceShow/hide mRNA sequence
ATGACTATCGATCAAACTTATCCTATTTTGACAGTGCGATGGTTGGGGGGGTTAGTTGTTCACGGACTAGCTGTACCTACCGGTCAATATCAGCAATGCAGTTCATCCAA
CGAGAAACCTAATCCGAATTATGGAGCTCTGACACAATCAAATCCGAATGAACACGATGTTGAATTGAATCGTACCTGTCTTTACTGG
Protein sequenceShow/hide protein sequence
MTIDQTYPILTVRWLGGLVVHGLAVPTGQYQQCSSSNEKPNPNYGALTQSNPNEHDVELNRTCLYW