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CmaCh12G007760 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh12G007760
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionCytochrome f
Genome locationCma_Chr12:5166225..5166474
RNA-Seq ExpressionCmaCh12G007760
SyntenyCmaCh12G007760
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0022900 - electron transport chain (biological process)
GO:0071704 - organic substance metabolic process (biological process)
GO:0009536 - plastid (cellular component)
GO:0031361 - integral component of thylakoid membrane (cellular component)
GO:0005506 - iron ion binding (molecular function)
GO:0009055 - electron transfer activity (molecular function)
GO:0020037 - heme binding (molecular function)
InterPro domainsIPR002325 - Cytochrome f
IPR036826 - Cytochrome f large domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3966614.1 hypothetical protein CMV_009300 [Castanea mollissima]1.1e-0747.62Show/hide
Query:  KQPTGRIVCANCHLANKPVS-----------------------RFHKRSCEWEKG-LNVSAVLILPEGFELA----PRSYFSRD
        ++ TGRIVCANCHLANKPV                        +  +     +KG LNV AVLILPEGFELA    PRSYF+RD
Subjt:  KQPTGRIVCANCHLANKPVS-----------------------RFHKRSCEWEKG-LNVSAVLILPEGFELA----PRSYFSRD
PHT34486.1 Ribulose bisphosphate carboxylase large chain [Capsicum baccatum]9.2e-0761.11Show/hide
Query:  TGRIVCANCHLANKPVSRFHKRSC---EWEKGLNVSAVLILPEGFELAPRSYFS
        TG IVCANCHLANKPV     ++      + GLNV AVLILPEGFELAP  + S
Subjt:  TGRIVCANCHLANKPVSRFHKRSC---EWEKGLNVSAVLILPEGFELAPRSYFS
PHT40439.1 Cytochrome f [Capsicum baccatum]9.2e-0761.54Show/hide
Query:  KQPTGRIVCANCHLANKPVSRFHKRSC---EWEKGLNVSAVLILPEGFELAP
        ++ TGRIVCANCHLANKPV     ++      + GLNV  VLILPEGFELAP
Subjt:  KQPTGRIVCANCHLANKPVSRFHKRSC---EWEKGLNVSAVLILPEGFELAP
PHT54987.1 Cytochrome f [Capsicum baccatum]3.2e-0763.46Show/hide
Query:  KQPTGRIVCANCHLANKPVSRFHKRSC---EWEKGLNVSAVLILPEGFELAP
        ++ TGRIVCANCHLANKPV     ++      + GLNV AVLILPEGFELAP
Subjt:  KQPTGRIVCANCHLANKPVSRFHKRSC---EWEKGLNVSAVLILPEGFELAP
RZC82192.1 hypothetical protein C5167_044979 [Papaver somniferum]4.9e-0862.96Show/hide
Query:  KQPTGRIVCANCHLANKPVSRFHKRSCEWEKGLNVSAVLILPEGFELAPRSYFS
        ++ TGRIVCANCHLANKPV    K+       LNV AVLILPEGFELAP    S
Subjt:  KQPTGRIVCANCHLANKPVSRFHKRSCEWEKGLNVSAVLILPEGFELAPRSYFS
TrEMBL top hitse value%identityAlignment
A0A2G2VNE0 Ribulose bisphosphate carboxylase large chain4.5e-0761.11Show/hide
Query:  TGRIVCANCHLANKPVSRFHKRSC---EWEKGLNVSAVLILPEGFELAPRSYFS
        TG IVCANCHLANKPV     ++      + GLNV AVLILPEGFELAP  + S
Subjt:  TGRIVCANCHLANKPVSRFHKRSC---EWEKGLNVSAVLILPEGFELAPRSYFS
A0A2G2W5G1 Cytochrome f4.5e-0761.54Show/hide
Query:  KQPTGRIVCANCHLANKPVSRFHKRSC---EWEKGLNVSAVLILPEGFELAP
        ++ TGRIVCANCHLANKPV     ++      + GLNV  VLILPEGFELAP
Subjt:  KQPTGRIVCANCHLANKPVSRFHKRSC---EWEKGLNVSAVLILPEGFELAP
A0A2G2XBY1 Cytochrome f1.5e-0763.46Show/hide
Query:  KQPTGRIVCANCHLANKPVSRFHKRSC---EWEKGLNVSAVLILPEGFELAP
        ++ TGRIVCANCHLANKPV     ++      + GLNV AVLILPEGFELAP
Subjt:  KQPTGRIVCANCHLANKPVSRFHKRSC---EWEKGLNVSAVLILPEGFELAP
A0A4Y7LBY5 Cytochrome f2.4e-0862.96Show/hide
Query:  KQPTGRIVCANCHLANKPVSRFHKRSCEWEKGLNVSAVLILPEGFELAPRSYFS
        ++ TGRIVCANCHLANKPV    K+       LNV AVLILPEGFELAP    S
Subjt:  KQPTGRIVCANCHLANKPVSRFHKRSCEWEKGLNVSAVLILPEGFELAPRSYFS
A0A6N2L321 Photosystem I assembly protein Ycf4 (Fragment)9.9e-0753.97Show/hide
Query:  KQPTGRIVCANCHLANKPVS-------------RFHKRSCEWEKG-LNVSAVLILPEGFELAP
        ++ TGRIVCANCHLANKPV              +  +     +KG LNV AVLILPEGFELAP
Subjt:  KQPTGRIVCANCHLANKPVS-------------RFHKRSCEWEKG-LNVSAVLILPEGFELAP
SwissProt top hitse value%identityAlignment
A7Y3F5 Cytochrome f2.3e-0843.75Show/hide
Query:  KQPTGRIVCANCHLANKPVS-----------------------RFHKRSCEWEK-GLNVSAVLILPEGFELAPRSYFSRD
        ++ TGRIVCANCHLANKPV                        +  +     +K GLNV AVLILPEGFELAP    S +
Subjt:  KQPTGRIVCANCHLANKPVS-----------------------RFHKRSCEWEK-GLNVSAVLILPEGFELAPRSYFSRD
B0Z4N9 Cytochrome f2.3e-0847.44Show/hide
Query:  KQPTGRIVCANCHLANKPV----------------------SRFHKRSCEWEK--GLNVSAVLILPEGFELAPRSYFS
        ++ TGRIVCANCHLANKPV                       R  K+     K  GLNV AVLILPEGFELAP +  S
Subjt:  KQPTGRIVCANCHLANKPV----------------------SRFHKRSCEWEK--GLNVSAVLILPEGFELAPRSYFS
Q06GP7 Cytochrome f1.3e-0847.95Show/hide
Query:  KQPTGRIVCANCHLANKPV-----------------------SRFHKRSCEWEK-GLNVSAVLILPEGFELAP
        ++ TGRIVCANCHLANKPV                       S+  +     +K GLNV AVLILPEGFELAP
Subjt:  KQPTGRIVCANCHLANKPV-----------------------SRFHKRSCEWEK-GLNVSAVLILPEGFELAP
Q06RB9 Cytochrome f2.3e-0844.87Show/hide
Query:  KQPTGRIVCANCHLANKPV-----------------------SRFHKRSCEWEK-GLNVSAVLILPEGFELAPRSYFS
        ++ TGRIVCANCHLANKPV                        +  +     +K GLNV AVLILPEGFELAP    S
Subjt:  KQPTGRIVCANCHLANKPV-----------------------SRFHKRSCEWEK-GLNVSAVLILPEGFELAPRSYFS
Q8S8W4 Cytochrome f2.3e-0844.87Show/hide
Query:  KQPTGRIVCANCHLANKPVS-----------------------RFHKRSCEWEK-GLNVSAVLILPEGFELAPRSYFS
        ++ TGRIVCANCHLANKPV                        +  +     +K GLNV AVLILPEGFELAP    S
Subjt:  KQPTGRIVCANCHLANKPVS-----------------------RFHKRSCEWEK-GLNVSAVLILPEGFELAPRSYFS
Arabidopsis top hitse value%identityAlignment
ATCG00540.1 photosynthetic electron transfer A2.8e-0946.58Show/hide
Query:  KQPTGRIVCANCHLANKPVS-----------------------RFHKRSCEWEKG-LNVSAVLILPEGFELAP
        ++ TGRIVCANCHLANKPV                        +  +     +KG LNV AVLILPEGFELAP
Subjt:  KQPTGRIVCANCHLANKPVS-----------------------RFHKRSCEWEKG-LNVSAVLILPEGFELAP

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAATCCACGAGAAGCAACCAACTGGCCGTATTGTTTGCGCCAACTGCCATTTAGCTAATAAGCCCGTGTCGAGGTTCCACAAGCGTTCTTGCGAATGGGAAAAGGG
TTTGAATGTGTCAGCTGTTCTTATTTTACCCGAAGGGTTTGAATTAGCCCCCCGATCGTATTTCTCCCGAGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAATCCACGAGAAGCAACCAACTGGCCGTATTGTTTGCGCCAACTGCCATTTAGCTAATAAGCCCGTGTCGAGGTTCCACAAGCGTTCTTGCGAATGGGAAAAGGG
TTTGAATGTGTCAGCTGTTCTTATTTTACCCGAAGGGTTTGAATTAGCCCCCCGATCGTATTTCTCCCGAGATTAA
Protein sequenceShow/hide protein sequence
MKIHEKQPTGRIVCANCHLANKPVSRFHKRSCEWEKGLNVSAVLILPEGFELAPRSYFSRD