CuGenDBv2

Gene ID	CmaCh13G001030
Organism	Cucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description	Elongin-C
Genome location	Cma_Chr13:727685..729392
RNA-Seq Expression	CmaCh13G001030
Synteny	CmaCh13G001030
Gene Ontology terms	GO:0006414 - translational elongation (biological process) GO:0006511 - ubiquitin-dependent protein catabolic process (biological process) GO:0070449 - elongin complex (cellular component) GO:0003746 - translation elongation factor activity (molecular function)
InterPro domains	IPR001232 - S-phase kinase-associated protein 1-like IPR011333 - SKP1/BTB/POZ domain superfamily IPR016073 - SKP1 component, POZ domain IPR039948 - Elongin-C

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008457436.1 PREDICTED: transcription elongation factor B polypeptide 1 [Cucumis melo]

1.2e-45

95.92

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Query:  MKKEGTVKLISAEGFEFLIHKDAAMVSQTIRYMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKE TVKLISAEGFEF+IHKDAAMVSQTIR MLTSPGNFAESQHREVTFPEISTTILEKICQYF+WNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEGTVKLISAEGFEFLIHKDAAMVSQTIRYMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

XP_022158132.1 elongin-C [Momordica charantia]

1.6e-45

95.92

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Query:  MKKEGTVKLISAEGFEFLIHKDAAMVSQTIRYMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKE TVKLISAEGFEF+IHKDAAMVSQTIR MLTSPGNFAESQHREVTFPEISTTILEKICQYF+WNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEGTVKLISAEGFEFLIHKDAAMVSQTIRYMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

XP_022964706.1 elongin-C-like [Cucurbita moschata]

1.9e-46

97.96

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Query:  MKKEGTVKLISAEGFEFLIHKDAAMVSQTIRYMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKE TVKLISAEGFEFLIHKDAAMVSQTIR MLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEGTVKLISAEGFEFLIHKDAAMVSQTIRYMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

XP_022970584.1 elongin-C-like [Cucurbita maxima]

2.0e-48

100

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Query:  MKKEGTVKLISAEGFEFLIHKDAAMVSQTIRYMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKEGTVKLISAEGFEFLIHKDAAMVSQTIRYMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEGTVKLISAEGFEFLIHKDAAMVSQTIRYMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

XP_038895699.1 elongin-C [Benincasa hispida]

4.3e-46

96.94

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Query:  MKKEGTVKLISAEGFEFLIHKDAAMVSQTIRYMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKE TVKLISAEGFEF+IHKDAAMVSQTIR MLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEGTVKLISAEGFEFLIHKDAAMVSQTIRYMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LY44 Elongin-C

6.0e-46

95.92

Show/hide

Query:  MKKEGTVKLISAEGFEFLIHKDAAMVSQTIRYMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKE TVKLISAEGFEF+IHKDAAMVSQTIR MLTSPGNFAESQHREVTFPEISTTILEKICQYF+WNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEGTVKLISAEGFEFLIHKDAAMVSQTIRYMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

A0A1S3C6T3 Elongin-C

6.0e-46

95.92

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Query:  MKKEGTVKLISAEGFEFLIHKDAAMVSQTIRYMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKE TVKLISAEGFEF+IHKDAAMVSQTIR MLTSPGNFAESQHREVTFPEISTTILEKICQYF+WNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEGTVKLISAEGFEFLIHKDAAMVSQTIRYMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

A0A6J1DWE1 Elongin-C

7.8e-46

95.92

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Query:  MKKEGTVKLISAEGFEFLIHKDAAMVSQTIRYMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKE TVKLISAEGFEF+IHKDAAMVSQTIR MLTSPGNFAESQHREVTFPEISTTILEKICQYF+WNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEGTVKLISAEGFEFLIHKDAAMVSQTIRYMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

A0A6J1HJP6 Elongin-C

9.3e-47

97.96

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Query:  MKKEGTVKLISAEGFEFLIHKDAAMVSQTIRYMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKE TVKLISAEGFEFLIHKDAAMVSQTIR MLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEGTVKLISAEGFEFLIHKDAAMVSQTIRYMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

A0A6J1I608 Elongin-C

9.9e-49

100

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Query:  MKKEGTVKLISAEGFEFLIHKDAAMVSQTIRYMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKEGTVKLISAEGFEFLIHKDAAMVSQTIRYMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEGTVKLISAEGFEFLIHKDAAMVSQTIRYMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

SwissProt top hits

e value

%identity

Alignment

P83940 Elongin-C

1.3e-18

47.83

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Query:  VKLISAEGFEFLIHKDAAMVSQTIRYMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQF--ASGKETEFPIEPELTLELMMAANYL
        VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF + +++  +S +  EFPI PE+ LEL+MAAN+L
Subjt:  VKLISAEGFEFLIHKDAAMVSQTIRYMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQF--ASGKETEFPIEPELTLELMMAANYL

P83941 Elongin-C

1.3e-18

47.83

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Query:  VKLISAEGFEFLIHKDAAMVSQTIRYMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQF--ASGKETEFPIEPELTLELMMAANYL
        VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF + +++  +S +  EFPI PE+ LEL+MAAN+L
Subjt:  VKLISAEGFEFLIHKDAAMVSQTIRYMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQF--ASGKETEFPIEPELTLELMMAANYL

Q15369 Elongin-C

1.3e-18

47.83

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Query:  VKLISAEGFEFLIHKDAAMVSQTIRYMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQF--ASGKETEFPIEPELTLELMMAANYL
        VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF + +++  +S +  EFPI PE+ LEL+MAAN+L
Subjt:  VKLISAEGFEFLIHKDAAMVSQTIRYMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQF--ASGKETEFPIEPELTLELMMAANYL

Q2KII4 Elongin-C

1.3e-18

47.83

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Query:  VKLISAEGFEFLIHKDAAMVSQTIRYMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQF--ASGKETEFPIEPELTLELMMAANYL
        VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF + +++  +S +  EFPI PE+ LEL+MAAN+L
Subjt:  VKLISAEGFEFLIHKDAAMVSQTIRYMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQF--ASGKETEFPIEPELTLELMMAANYL

Q9USX9 Elongin-C

1.8e-15

44.33

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Query:  MKKEGTVKLISAEGFEFLIHKDAAMVSQTIRYMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKE-TEFPIEPELTLELMMAANYL
        M+KE  V+LIS +GF F++ K+ A +S TIR +L + G F+E+Q  E TFP+I  T+LEK+C+Y ++N ++ +  +  +F I PE+ LEL++ A YL
Subjt:  MKKEGTVKLISAEGFEFLIHKDAAMVSQTIRYMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKE-TEFPIEPELTLELMMAANYL

Arabidopsis top hits

e value

%identity

Alignment

AT5G59140.1 BTB/POZ domain-containing protein

3.5e-38

80.65

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Query:  TVKLISAEGFEFLIHKDAAMVSQTIRYMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
        TVKLIS EGFEF+I ++AAMVSQTIR MLTSPG F+ES+   VTFP+ISTTILEKICQYFYW+LQ++ GKETEF IEPELTLELMMAANYLHT
Subjt:  TVKLISAEGFEFLIHKDAAMVSQTIRYMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

Sequences

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CDS sequence

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ATGAAGAAGGAAGGGACTGTGAAATTGATCAGCGCTGAGGGTTTCGAGTTCTTGATCCACAAGGATGCTGCTATGGTTTCTCAGACCATTCGATACATGCTTACTTCCCC
TGGTAATTTTGCTGAATCGCAACACAGAGAAGTGACTTTTCCTGAGATTAGCACCACCATTCTCGAGAAGATTTGCCAATATTTTTACTGGAATCTTCAGTTCGCCAGTG
GGAAAGAGACCGAGTTCCCGATTGAACCTGAATTGACTCTTGAGTTGATGATGGCTGCCAACTATCTCCATACATGA

mRNA sequence

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GGGAAGAGGAATATCTCTCAGTTCTGCGAAATAGTTCAGAGCCAAATGAAGAAGGAAGGGACTGTGAAATTGATCAGCGCTGAGGGTTTCGAGTTCTTGATCCACAAGGA
TGCTGCTATGGTTTCTCAGACCATTCGATACATGCTTACTTCCCCTGGTAATTTTGCTGAATCGCAACACAGAGAAGTGACTTTTCCTGAGATTAGCACCACCATTCTCG
AGAAGATTTGCCAATATTTTTACTGGAATCTTCAGTTCGCCAGTGGGAAAGAGACCGAGTTCCCGATTGAACCTGAATTGACTCTTGAGTTGATGATGGCTGCCAACTAT
CTCCATACATGA

Protein sequence

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MKKEGTVKLISAEGFEFLIHKDAAMVSQTIRYMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

CmaCh13G001030 (gene) of Cucurbita maxima (Rimu) v1.1 genome