CuGenDBv2

Gene ID	CmaCh14G004860
Organism	Cucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description	aladin
Genome location	Cma_Chr14:2381721..2384800
RNA-Seq Expression	CmaCh14G004860
Synteny	CmaCh14G004860
Gene Ontology terms	GO:0006913 - nucleocytoplasmic transport (biological process) GO:0005643 - nuclear pore (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001680 - WD40 repeat IPR015943 - WD40/YVTN repeat-like-containing domain superfamily IPR045139 - Aladin

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7017619.1 Aladin [Cucurbita argyrosperma subsp. argyrosperma]

2.5e-82

100

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Query:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI
        GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI
Subjt:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI

Query:  TTLTNSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLI
        TTLTNSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLI
Subjt:  TTLTNSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLI

XP_022934085.1 aladin [Cucurbita moschata]

2.5e-82

100

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Query:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI
        GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI
Subjt:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI

Query:  TTLTNSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLI
        TTLTNSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLI
Subjt:  TTLTNSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLI

XP_022983772.1 aladin [Cucurbita maxima]

2.5e-82

100

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Query:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI
        GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI
Subjt:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI

Query:  TTLTNSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLI
        TTLTNSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLI
Subjt:  TTLTNSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLI

XP_023527318.1 aladin isoform X1 [Cucurbita pepo subsp. pepo]

2.5e-82

100

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Query:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI
        GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI
Subjt:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI

Query:  TTLTNSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLI
        TTLTNSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLI
Subjt:  TTLTNSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLI

XP_023527319.1 aladin isoform X2 [Cucurbita pepo subsp. pepo]

2.5e-82

100

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Query:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI
        GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI
Subjt:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI

Query:  TTLTNSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLI
        TTLTNSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLI
Subjt:  TTLTNSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLI

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B899 aladin

2.8e-79

94.74

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Query:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI
        GLGTPIRRGLGCVSTIKWSP+GDYFFAAK DGTFYLWETN WTSEQWS+TSGFVTGAIWDP+GRMILLAFS+SSVLGSIHFASKPPSLVAHLL VDLPEI
Subjt:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI

Query:  TTLTNSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLI
        TTLTNSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYD+KRTPLICPSLI
Subjt:  TTLTNSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLI

A0A5A7UJP0 Aladin

1.4e-78

94.7

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Query:  LGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEIT
        LGTPIRRGLGCVSTIKWSP+GDYFFAAK DGTFYLWETN WTSEQWS+TSGFVTGAIWDP+GRMILLAFS+SSVLGSIHFASKPPSLVAHLL VDLPEIT
Subjt:  LGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEIT

Query:  TLTNSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLI
        TLTNSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYD+KRTPLICPSLI
Subjt:  TLTNSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLI

A0A6J1DEW4 aladin isoform X2

2.5e-80

95.39

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Query:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI
        GLGTPIRRGLGCVSTIKWSP+GDYFFAAK DGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFS+SSVLGSIHFASKPPSLVAHLLAVDLPEI
Subjt:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI

Query:  TTLTNSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLI
        TTLTNS+GIEKIAWD SGERLAVSFKDGDELYNGLIAVYD+KRTPL+CPSLI
Subjt:  TTLTNSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLI

A0A6J1F6N8 aladin

1.2e-82

100

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Query:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI
        GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI
Subjt:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI

Query:  TTLTNSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLI
        TTLTNSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLI
Subjt:  TTLTNSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLI

A0A6J1J094 aladin

1.2e-82

100

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Query:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI
        GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI
Subjt:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI

Query:  TTLTNSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLI
        TTLTNSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLI
Subjt:  TTLTNSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLI

SwissProt top hits

e value

%identity

Alignment

Q8GWR1 Aladin

6.6e-62

72.08

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Query:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTT--SGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLP
        G GTPIRRGLG +S +KWSP+GDYFFAA+ DGTF LWETNTWTSE WS +  SG VTGAIWDP+GR IL++FS+SS LGS+HF+SKPPSL AHLL V+LP
Subjt:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTT--SGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLP

Query:  EITTLTNSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLI
        EI +LT  +GIEKIAWDASGERLAVS+K GDE Y GLIA+YD +RTP++  SL+
Subjt:  EITTLTNSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLI

Q9W351 Aladin

6.9e-11

31.88

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Query:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETN-TWTSEQW-STTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFA----------SKPPSL
        G+  P++R     S +KWSP  D+ FAA +D  F +W  +  WT+E+W     G+V  A W P GR +L   S   +L  + F            K    
Subjt:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETN-TWTSEQW-STTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFA----------SKPPSL

Query:  VAHLLAVDLPEITTLTNSQGIEKIAWDASGERLAVSFK
        +A L A  +    TL      +++AWD  G  L V+FK
Subjt:  VAHLLAVDLPEITTLTNSQGIEKIAWDASGERLAVSFK

Arabidopsis top hits

e value

%identity

Alignment

AT3G56900.1 Transducin/WD40 repeat-like superfamily protein

4.7e-63

72.08

Show/hide

Query:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTT--SGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLP
        G GTPIRRGLG +S +KWSP+GDYFFAA+ DGTF LWETNTWTSE WS +  SG VTGAIWDP+GR IL++FS+SS LGS+HF+SKPPSL AHLL V+LP
Subjt:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTT--SGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLP

Query:  EITTLTNSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLI
        EI +LT  +GIEKIAWDASGERLAVS+K GDE Y GLIA+YD +RTP++  SL+
Subjt:  EITTLTNSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLI

Sequences

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CDS sequence

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mRNA sequence

Show/hide mRNA sequence

ATGGTTCCAGGGTTAGGAACACCCATTAGGCGTGGATTAGGGTGTGTATCAACAATCAAGTGGTCACCTTCTGGAGATTACTTTTTTGCTGCAAAATTGGATGGA
ACATTTTATCTTTGGGAAACGAACACATGGACATCTGAACAGTGGTCGACAACAAGTGGTTTTGTCACGGGAGCAATATGGGATCCTGATGGACGTATGATACTA
CTTGCTTTCTCTGAGTCTTCAGTATTGGGTTCAATTCATTTTGCATCTAAGCCTCCGTCATTAGTTGCACATCTGCTAGCTGTTGACTTGCCAGAGATAACTACT
TTGACGAACAGTCAGGGTATTGAGAAGATAGCATGGGATGCTTCAGGAGAGCGACTGGCTGTCTCTTTCAAGGATGGAGATGAATTATATAATGGCCTGATCGCA
GTATATGATATTAAAAGGACTCCCCTGATTTGTCCATCATTGATTGTTGGAGCAGTGGATTTTGCTGTACCTATCCTCTCATATTCCGCTCTCATGTTGTTCCTT
AGTGGTGGTTCTCTTGGAGCCCTAGTCTTGGTAGGAGATGCTGTATGGTGCTAAATTTCAAAGAGAAGAGGTTTTCTAATTCTTCTGTACAGTCTGTTGCTGCAA
ATCCTACGGGAAGATTTGTAGGTCGGTGGATTTACATTTTACTAGAGCATAGCATCCAGCCAAGATGGTCCTCACCATGAAAGACCCTCTCCCTTGCATGACTTT
TTGTCCAACCCTTCATTTATTATTATGGCCATCTCGTTCTACACTAGCTTGAACACAACTGGGATTACCTCAACTTTCTCCAACATTTTTCTCTCCTTTTGTTCT
ATAAATGGCTTCCTTTTGACAAAAAGGAATGGAGATCTACCCCACCCGAAAGTTTAAATCGAACATTTGAGATCTTGTTGGATAATCATTTAGCTTTTGAAAACT
ATGCTTGTTTCTTCGAAGTTGTTTTTATTCTTCGATAATTGGTTTGGGTTTTGTAAATTAGAGGTGGAAGGAG

Protein sequence

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MVPGLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEITT
LTNSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLIVGAVDFAVPILSYSALMLFLSGGSLGALVLVGDAVWC

CmaCh14G004860 (gene) of Cucurbita maxima (Rimu) v1.1 genome