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CmaCh14G010480 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh14G010480
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionMediator of RNA polymerase II transcription subunit 37f
Genome locationCma_Chr14:5509803..5512384
RNA-Seq ExpressionCmaCh14G010480
SyntenyCmaCh14G010480
Gene Ontology termsGO:0000166 - nucleotide binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ACR36657.1 unknown [Zea mays]3.3e-0534.35Show/hide
Query:  GIVPQRSVLFKNERGVDDMKNPSLGIIPWKLLNERFRLIKILISCNPDISRGMLPDNMLKDKSSFCRP-VHFTNAEGIVPDN----RSNNPRCGNSPNAS
        GI P+R +  ++   V   +  S G  P + L ER  +     S     S GM P  +L D+SS CRP +    A G++PDN    RSN   C   P++S
Subjt:  GIVPQRSVLFKNERGVDDMKNPSLGIIPWKLLNERFRLIKILISCNPDISRGMLPDNMLKDKSSFCRP-VHFTNAEGIVPDN----RSNNPRCGNSPNAS

Query:  GMSEVKRLCDKKSCSNFDNLLISAGIVPLSR
        G + VK  CD+    +F     +AG  P+SR
Subjt:  GMSEVKRLCDKKSCSNFDNLLISAGIVPLSR

BBG99231.1 Mediator of RNA polymerase II transcription subunit 37f [Prunus dulcis]5.1e-0660.38Show/hide
Query:  FSSLQRVIPGAIYPIDPVNMFAVDFPMFSAAAPLPIPGVINLEIPKSETRAVM
        F+S  R +PGA+YPIDP N+FAV+FPM S A   P P + NL IPKSET+AV+
Subjt:  FSSLQRVIPGAIYPIDPVNMFAVDFPMFSAAAPLPIPGVINLEIPKSETRAVM

TrEMBL top hitse value%identityAlignment
A0A0E0M8K0 Uncharacterized protein1.4e-0433.07Show/hide
Query:  GIIPWKLLNERFRLIKILISCNPDISRGMLPDNMLKDKSSFCRPVHFTNAEGIVP----DNRSNNPRCGNSPNASGMSEVKRLCDKKSCSNFDNLLISAG
        G++P   L+   R  + L +    +  G  P  +L   S  C  V    + GIVP     N +N   C + P+  G+  V  L DK SCS F N  IS G
Subjt:  GIIPWKLLNERFRLIKILISCNPDISRGMLPDNMLKDKSSFCRPVHFTNAEGIVP----DNRSNNPRCGNSPNASGMSEVKRLCDKKSCSNFDNLLISAG

Query:  IVPLSRFEVKFSPASLESLAKLGGIDP
        I PLS    ++   S  +L   GGI P
Subjt:  IVPLSRFEVKFSPASLESLAKLGGIDP

A0A4Y1R548 Mediator of RNA polymerase II transcription subunit 37f2.5e-0660.38Show/hide
Query:  FSSLQRVIPGAIYPIDPVNMFAVDFPMFSAAAPLPIPGVINLEIPKSETRAVM
        F+S  R +PGA+YPIDP N+FAV+FPM S A   P P + NL IPKSET+AV+
Subjt:  FSSLQRVIPGAIYPIDPVNMFAVDFPMFSAAAPLPIPGVINLEIPKSETRAVM

C4J657 Uncharacterized protein1.6e-0534.35Show/hide
Query:  GIVPQRSVLFKNERGVDDMKNPSLGIIPWKLLNERFRLIKILISCNPDISRGMLPDNMLKDKSSFCRP-VHFTNAEGIVPDN----RSNNPRCGNSPNAS
        GI P+R +  ++   V   +  S G  P + L ER  +     S     S GM P  +L D+SS CRP +    A G++PDN    RSN   C   P++S
Subjt:  GIVPQRSVLFKNERGVDDMKNPSLGIIPWKLLNERFRLIKILISCNPDISRGMLPDNMLKDKSSFCRP-VHFTNAEGIVPDN----RSNNPRCGNSPNAS

Query:  GMSEVKRLCDKKSCSNFDNLLISAGIVPLSR
        G + VK  CD+    +F     +AG  P+SR
Subjt:  GMSEVKRLCDKKSCSNFDNLLISAGIVPLSR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATTCTTGAGTGCAGAGCAAACCCAATTCGATTAGCTCTCGGATTGCCACTTCCCACATTTTCTTCACTTCAGAGAGTTATACCTGGTGCAATATATCCAATTGA
TCCAGTTAACATGTTTGCAGTTGATTTTCCCATGTTTTCAGCAGCTGCACCACTTCCAATTCCAGGAGTCATTAACCTTGAGATCCCGAAGTCAGAAACAAGAGCTGTCA
TGTTTAAATCTGAAGAACAAGAAGCCAAGCTGGCAGGTTTCTGTGGCGAATTCGCTTCAGAACTTCACATTCTCTGTGAAAACTTTTCGTCGAATTTCCAGATTGCTGGT
ATTCCAGGAATTGTCCCACAAAGGAGTGTATTGTTCAAAAATGAAAGAGGTGTGGACGATATGAAAAATCCCTCTCTCGGAATCATTCCTTGGAAGTTGTTGAATGAAAG
ATTCAGGTTAATAAAAATTCTTATCTCTTGCAACCCGGATATCTCTCGAGGAATGCTTCCTGATAACATGTTGAAAGATAAATCCAGCTTTTGTAGACCTGTGCACTTTA
CCAATGCTGAAGGTATCGTTCCTGACAACAGATCTAACAATCCAAGATGTGGCAACTCGCCTAATGCTTCTGGAATGTCTGAAGTGAAGAGGTTATGTGATAAGAAAAGC
TGCTCCAACTTCGACAACTTGCTTATCTCTGCAGGAATTGTTCCATTAAGTAGATTTGAAGTCAAATTCAGCCCTGCAAGTTTGGAAAGCTTGGCCAAACTTGGAGGAAT
TGATCCAAATATCTGA
mRNA sequenceShow/hide mRNA sequence
TTTCTTCCCTAATCCCAATTACGTCACACAACTACGGATTCAGTGGCCTCGCATGTCACACAAATCTCCATTAACTTCAGCGCCGGAGAAGCTTCGAGCCCCACAATCGC
GATTTTGATCATTGTCAAACCCCAATTACCGAGTGGAGCAAATGGGGATTTTGACACCTTACATAAGTCAAAAGGATATACAGAGGAAATGGGCATTTTTACATGTTTCT
TTCTGCGGCAATTTGTGGGGAGTAATTGGAATCATCGTCAAGAGTGGAGGACGAAATTCCAAGTGATGAAGCAAACGTTGTTGTGGTGTCGCCACCATTAAGGTATCTCT
TTAATCGATCCAAGTCATAAGCAGCATCCAGCATTGTGGGTCTTGTGGATGGAGATTCTTGAGTGCAGAGCAAACCCAATTCGATTAGCTCTCGGATTGCCACTTCCCAC
ATTTTCTTCACTTCAGAGAGTTATACCTGGTGCAATATATCCAATTGATCCAGTTAACATGTTTGCAGTTGATTTTCCCATGTTTTCAGCAGCTGCACCACTTCCAATTC
CAGGAGTCATTAACCTTGAGATCCCGAAGTCAGAAACAAGAGCTGTCATGTTTAAATCTGAAGAACAAGAAGCCAAGCTGGCAGGTTTCTGTGGCGAATTCGCTTCAGAA
CTTCACATTCTCTGTGAAAACTTTTCGTCGAATTTCCAGATTGCTGGTATTCCAGGAATTGTCCCACAAAGGAGTGTATTGTTCAAAAATGAAAGAGGTGTGGACGATAT
GAAAAATCCCTCTCTCGGAATCATTCCTTGGAAGTTGTTGAATGAAAGATTCAGGTTAATAAAAATTCTTATCTCTTGCAACCCGGATATCTCTCGAGGAATGCTTCCTG
ATAACATGTTGAAAGATAAATCCAGCTTTTGTAGACCTGTGCACTTTACCAATGCTGAAGGTATCGTTCCTGACAACAGATCTAACAATCCAAGATGTGGCAACTCGCCT
AATGCTTCTGGAATGTCTGAAGTGAAGAGGTTATGTGATAAGAAAAGCTGCTCCAACTTCGACAACTTGCTTATCTCTGCAGGAATTGTTCCATTAAGTAGATTTGAAGT
CAAATTCAGCCCTGCAAGTTTGGAAAGCTTGGCCAAACTTGGAGGAATTGATCCAAATATCTGA
Protein sequenceShow/hide protein sequence
MEILECRANPIRLALGLPLPTFSSLQRVIPGAIYPIDPVNMFAVDFPMFSAAAPLPIPGVINLEIPKSETRAVMFKSEEQEAKLAGFCGEFASELHILCENFSSNFQIAG
IPGIVPQRSVLFKNERGVDDMKNPSLGIIPWKLLNERFRLIKILISCNPDISRGMLPDNMLKDKSSFCRPVHFTNAEGIVPDNRSNNPRCGNSPNASGMSEVKRLCDKKS
CSNFDNLLISAGIVPLSRFEVKFSPASLESLAKLGGIDPNI