; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmaCh14G016500 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh14G016500
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Descriptionserine/arginine-rich SC35-like splicing factor SCL28
Genome locationCma_Chr14:12360867..12367150
RNA-Seq ExpressionCmaCh14G016500
SyntenyCmaCh14G016500
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0007283 - spermatogenesis (biological process)
GO:0030154 - cell differentiation (biological process)
GO:0030261 - chromosome condensation (biological process)
GO:0000786 - nucleosome (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0016607 - nuclear speck (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR003954 - RNA recognition motif domain, eukaryote
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008438778.1 PREDICTED: serine/arginine-rich SC35-like splicing factor SCL28 [Cucumis melo]3.9e-11895.53Show/hide
Query:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF
        MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF
Subjt:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF

Query:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISRSHSPRD
        AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGRS RRRSPARSPRRRY SYSRSPSPARHDSRSRGARDEYLSPARSRSIS S SPRD
Subjt:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISRSHSPRD

Query:  RRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYS
        R+DYSRSPTPK+NGRSPR VD ARSRSRSP+  SRSPSGSRSRSYS
Subjt:  RRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYS

XP_022955785.1 serine/arginine-rich SC35-like splicing factor SCL28 [Cucurbita moschata]4.8e-12499.19Show/hide
Query:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF
        MA+YRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF
Subjt:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF

Query:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISRSHSPRD
        AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISRSHSPRD
Subjt:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISRSHSPRD

Query:  RRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYS
        RRDYSRSPTPKENGRSPRAVD ARSRSRSPRAASRSPSGSRSRSYS
Subjt:  RRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYS

XP_022979912.1 serine/arginine-rich SC35-like splicing factor SCL28 [Cucurbita maxima]5.6e-125100Show/hide
Query:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF
        MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF
Subjt:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF

Query:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISRSHSPRD
        AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISRSHSPRD
Subjt:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISRSHSPRD

Query:  RRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYS
        RRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYS
Subjt:  RRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYS

XP_023527505.1 serine/arginine-rich SC35-like splicing factor SCL28 [Cucurbita pepo subsp. pepo]1.6e-12499.59Show/hide
Query:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF
        MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF
Subjt:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF

Query:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISRSHSPRD
        AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISRSHSPRD
Subjt:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISRSHSPRD

Query:  RRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYS
        RRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRS+S
Subjt:  RRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYS

XP_038878233.1 serine/arginine-rich SC35-like splicing factor SCL28 [Benincasa hispida]7.9e-11996.34Show/hide
Query:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF
        M RYRSRSRSYSPRRRSRTPPRGRKR+DDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF
Subjt:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF

Query:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISRSHSPRD
        AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGRS RRRSPARSPRRRY SYSRSPSPARHDSRSRGAR+EYLSPARSRSISRS SPRD
Subjt:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISRSHSPRD

Query:  RRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYS
        RRDYSRSPTPKENGRSPR VD ARSRSRSPRA SRSPSGSRSRSYS
Subjt:  RRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYS

TrEMBL top hitse value%identityAlignment
A0A1S3AXW0 serine/arginine-rich SC35-like splicing factor SCL281.9e-11895.53Show/hide
Query:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF
        MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF
Subjt:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF

Query:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISRSHSPRD
        AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGRS RRRSPARSPRRRY SYSRSPSPARHDSRSRGARDEYLSPARSRSIS S SPRD
Subjt:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISRSHSPRD

Query:  RRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYS
        R+DYSRSPTPK+NGRSPR VD ARSRSRSP+  SRSPSGSRSRSYS
Subjt:  RRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYS

A0A5D3CXM8 Serine/arginine-rich SC35-like splicing factor SCL285.5e-11895.51Show/hide
Query:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF
        MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF
Subjt:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF

Query:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISRSHSPRD
        AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGRS RRRSPARSPRRRY SYSRSPSPARHDSRSRGARDEYLSPARSRSIS S SPRD
Subjt:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISRSHSPRD

Query:  RRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSY
        R+DYSRSPTPK+NGRSPR VD ARSRSRSP+  SRSPSGSRSRSY
Subjt:  RRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSY

A0A6J1C7W4 serine/arginine-rich SC35-like splicing factor SCL281.5e-11593.9Show/hide
Query:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF
        MARYRSRSRSYSPRRRSR+PPRGRKRYDDDPRDRY ESRS+RDRRSPAPSGLLVRNLPLDARPEDLR PFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF
Subjt:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF

Query:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISRSHSPRD
        AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGRS RRRSPARSPRRRY SYSRSPSPARHDSR+RGARDEYLSPARSRSISRS SP D
Subjt:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISRSHSPRD

Query:  RRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYS
        RRDYSRSP+PKENGRSPR VDI RSRSRS RA SRSPSGSRS+SYS
Subjt:  RRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYS

A0A6J1GW11 serine/arginine-rich SC35-like splicing factor SCL282.3e-12499.19Show/hide
Query:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF
        MA+YRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF
Subjt:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF

Query:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISRSHSPRD
        AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISRSHSPRD
Subjt:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISRSHSPRD

Query:  RRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYS
        RRDYSRSPTPKENGRSPRAVD ARSRSRSPRAASRSPSGSRSRSYS
Subjt:  RRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYS

A0A6J1IQ05 serine/arginine-rich SC35-like splicing factor SCL282.7e-125100Show/hide
Query:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF
        MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF
Subjt:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF

Query:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISRSHSPRD
        AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISRSHSPRD
Subjt:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISRSHSPRD

Query:  RRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYS
        RRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYS
Subjt:  RRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYS

SwissProt top hitse value%identityAlignment
P30352 Serine/arginine-rich splicing factor 21.3e-2041.46Show/hide
Query:  SGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGREIRIVFA--------EENRKTPQEMRVTSR
        + L V NL     P+ LR  FE++G V DVY+P++ YT E RGF FV+F    DA +A   ++  V+ GRE+R+  A          +R+ P   R  S 
Subjt:  SGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGREIRIVFA--------EENRKTPQEMRVTSR

Query:  SSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISRSHSPRDRRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSR
          GR S      RSPRRR  S SRS S +R  SRSR +R +  S  RSRS S S S   RR  S+S +   +    R+   +RSRSRSP   S+  S SR
Subjt:  SSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISRSHSPRDRRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSR

Query:  SRSYS
        SRS S
Subjt:  SRSYS

Q1PDV2 Serine/arginine-rich SC35-like splicing factor SCL281.6e-6163.05Show/hide
Query:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF
        MAR RSRSRSYSPR R R+PPR RK YDD   +R RE  S RD  S  PSGLL+RNLPLDARP DLR  FERFGP+KD+YLP+NYYTGEPRGFGFVK+R+
Subjt:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF

Query:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGR-SSRRRSPARSPRRRYHSYSRSPSPARHDSR-SRGARDEYLSP-ARSRSISRSHS
        AEDAAEA +++NH VIGGREI IVFAEENRKTPQEMR T+ +SGR    +R+  RSPRRRY S+SRS SP R +SR S+   D+  SP  RSRSISRS  
Subjt:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGR-SSRRRSPARSPRRRYHSYSRSPSPARHDSR-SRGARDEYLSP-ARSRSISRSHS

Query:  PRDRRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYS
        PR+ R+Y        N RSPR       R  +P   SR  S SRSRS S
Subjt:  PRDRRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYS

Q8L3X8 Serine/arginine-rich SC35-like splicing factor SCL304.0e-3345.7Show/hide
Query:  YSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQ
        YSP RR     RGR      PR  Y        RR  +   LLVRN+PLD RPE+LR PFERFGPV+DVY+P++YY+G+PRGF FV+F  A DA EA++ 
Subjt:  YSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQ

Query:  LNHTVIGGREIRIVFAEENRKTPQEMRVTS------------RSSGRS-SRRRSPARSPRR------RYHSYSRSPSPARHDSRSRGARDEYLSPARSRS
        +N     GREI +V A E+RK P+EMRV +            RS GRS SR  S +RSPRR      RY S S SP+P R     RG  DE  S      
Subjt:  LNHTVIGGREIRIVFAEENRKTPQEMRVTS------------RSSGRS-SRRRSPARSPRR------RYHSYSRSPSPARHDSRSRGARDEYLSPARSRS

Query:  ISRSHSPRDRRDYSRSPTPKENGRS---PRAVDIARSRSRSPRAASRSPSGSRSRS
          RS+SP      + +P    NG +    +    A  R R  RA SRSPSGSRSRS
Subjt:  ISRSHSPRDRRDYSRSPTPKENGRS---PRAVDIARSRSRSPRAASRSPSGSRSRS

Q9LHP2 Serine/arginine-rich SC35-like splicing factor SCL30A1.4e-3849.41Show/hide
Query:  RSRSYSPRRRSRTPPR--GRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDA
        R RSY+P     +PPR  GR+     PR R+  SR      S  P+ LLVRNL  D R EDLR PFE+FGPVKD+YLP++YYTG+PRGFGF++F    DA
Subjt:  RSRSYSPRRRSRTPPR--GRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDA

Query:  AEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISRSHSPRDRR--
        AEAK Q++  ++ GRE+ +VFAEENRK P EMR   R  GRS+R +   RSP R    YSRSP P R   RSR     Y SP   R  SRS SP+DRR  
Subjt:  AEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISRSHSPRDRR--

Query:  -DYSRSPTPKENGRSPRAVDIAR--SRSRSPRAASRSPSGSRSRSYSLGQQSCSS
         + S S +P  NG   R+    R  S SRSPR   RS S  ++RSY+  Q    S
Subjt:  -DYSRSPTPKENGRSPRAVDIAR--SRSRSPRAASRSPSGSRSRSYSLGQQSCSS

Q9SEU4 Serine/arginine-rich SC35-like splicing factor SCL333.2e-3848.83Show/hide
Query:  RSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAE
        R RSY+P     +PPRG  R    P  R R     RD     P+ LLVRNL  D R EDLR  FE+FGPVKD+YLP++YYTG+PRGFGFV+F    DAA+
Subjt:  RSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAE

Query:  AKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGR-SSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISRSHSPRD-----
        AK  ++  ++ GRE+ +VFAEENRK P EMR   R  GR   RRR+P      RY+S SRSP P R  SRSR    +Y SP   R   RS SPR+     
Subjt:  AKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGR-SSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISRSHSPRD-----

Query:  RRDYSRSP----------TPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYS
        RR YSRSP          TP        +    RS SRSPR  SRSPS  R+RS S
Subjt:  RRDYSRSP----------TPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYS

Arabidopsis top hitse value%identityAlignment
AT1G55310.1 SC35-like splicing factor 332.3e-3948.83Show/hide
Query:  RSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAE
        R RSY+P     +PPRG  R    P  R R     RD     P+ LLVRNL  D R EDLR  FE+FGPVKD+YLP++YYTG+PRGFGFV+F    DAA+
Subjt:  RSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAE

Query:  AKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGR-SSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISRSHSPRD-----
        AK  ++  ++ GRE+ +VFAEENRK P EMR   R  GR   RRR+P      RY+S SRSP P R  SRSR    +Y SP   R   RS SPR+     
Subjt:  AKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGR-SSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISRSHSPRD-----

Query:  RRDYSRSP----------TPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYS
        RR YSRSP          TP        +    RS SRSPR  SRSPS  R+RS S
Subjt:  RRDYSRSP----------TPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYS

AT1G55310.2 SC35-like splicing factor 332.5e-3849.34Show/hide
Query:  RSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAE
        R RSY+P     +PPRG  R    P  R R     RD     P+ LLVRNL  D R EDLR  FE+FGPVKD+YLP++YYTG+PRGFGFV+F    DAA+
Subjt:  RSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAE

Query:  AKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGR-SSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISRSHSPRD-----
        AK  ++  ++ GRE+ +VFAEENRK P EMR   R  GR   RRR+P      RY+S SRSP P R  SRSR    +Y SP   R   RS SPR+     
Subjt:  AKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGR-SSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISRSHSPRD-----

Query:  RRDYSRSPTPKENGRSPRAVDIARSRSRS
        RR YSRSP    +G   R++   R +SRS
Subjt:  RRDYSRSPTPKENGRSPRAVDIARSRSRS

AT1G55310.3 SC35-like splicing factor 335.2e-3646.82Show/hide
Query:  RSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTG------------EPRGFG
        R RSY+P     +PPRG  R    P  R R     RD     P+ LLVRNL  D R EDLR  FE+FGPVKD+YLP++YYTG            +PRGFG
Subjt:  RSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTG------------EPRGFG

Query:  FVKFRFAEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISR
        FV+F    DAA+AK  ++  ++ GRE+ +VFAEENRK P EMR   R  G  SR R   R+P  RY+S SRSP P R  SRSR    +Y SP   R   R
Subjt:  FVKFRFAEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISR

Query:  SHSPRD-----RRDYSRSP----------TPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYS
        S SPR+     RR YSRSP          TP        +    RS SRSPR  SRSPS  R+RS S
Subjt:  SHSPRD-----RRDYSRSP----------TPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYS

AT3G13570.1 SC35-like splicing factor 30A1.0e-3949.41Show/hide
Query:  RSRSYSPRRRSRTPPR--GRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDA
        R RSY+P     +PPR  GR+     PR R+  SR      S  P+ LLVRNL  D R EDLR PFE+FGPVKD+YLP++YYTG+PRGFGF++F    DA
Subjt:  RSRSYSPRRRSRTPPR--GRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDA

Query:  AEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISRSHSPRDRR--
        AEAK Q++  ++ GRE+ +VFAEENRK P EMR   R  GRS+R +   RSP R    YSRSP P R   RSR     Y SP   R  SRS SP+DRR  
Subjt:  AEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISRSHSPRDRR--

Query:  -DYSRSPTPKENGRSPRAVDIAR--SRSRSPRAASRSPSGSRSRSYSLGQQSCSS
         + S S +P  NG   R+    R  S SRSPR   RS S  ++RSY+  Q    S
Subjt:  -DYSRSPTPKENGRSPRAVDIAR--SRSRSPRAASRSPSGSRSRSYSLGQQSCSS

AT5G18810.1 SC35-like splicing factor 281.1e-6263.05Show/hide
Query:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF
        MAR RSRSRSYSPR R R+PPR RK YDD   +R RE  S RD  S  PSGLL+RNLPLDARP DLR  FERFGP+KD+YLP+NYYTGEPRGFGFVK+R+
Subjt:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF

Query:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGR-SSRRRSPARSPRRRYHSYSRSPSPARHDSR-SRGARDEYLSP-ARSRSISRSHS
        AEDAAEA +++NH VIGGREI IVFAEENRKTPQEMR T+ +SGR    +R+  RSPRRRY S+SRS SP R +SR S+   D+  SP  RSRSISRS  
Subjt:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGR-SSRRRSPARSPRRRYHSYSRSPSPARHDSR-SRGARDEYLSP-ARSRSISRSHS

Query:  PRDRRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYS
        PR+ R+Y        N RSPR       R  +P   SR  S SRSRS S
Subjt:  PRDRRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGAGATCATTAGGATACGGATCCAGATTCCATATTTCGGGCGCAACTTCCGATTATAAGGGTTTTCTCTGCTTCTTTCGCGTGATTTTCGTTTGCAGGTACTCGAG
GAGACGCAAACAACCCAATATGGCGAGGTACCGAAGCCGGAGCAGAAGTTACAGCCCTCGTCGGCGTAGCCGAACCCCACCACGAGGGCGGAAGCGGTACGACGACGACC
CTAGAGACCGGTACCGCGAAAGCAGGTCTCACAGGGACCGTCGCTCTCCTGCTCCTTCTGGGTTACTCGTGCGTAATCTCCCCCTTGATGCTAGGCCAGAAGATCTTAGG
ATCCCGTTCGAGCGTTTTGGTCCTGTTAAGGATGTGTATCTTCCGAAAAACTACTACACTGGGGAGCCCCGAGGGTTTGGGTTTGTGAAGTTTCGGTTTGCAGAAGATGC
AGCTGAAGCAAAACAACAACTGAATCATACGGTTATAGGTGGACGGGAGATACGAATTGTGTTTGCTGAGGAGAACAGGAAGACTCCACAAGAAATGCGTGTGACTTCAC
GCTCAAGTGGCAGAAGCAGCAGAAGACGTTCTCCAGCAAGGTCTCCGCGACGACGATATCATTCTTACTCACGCTCACCTTCACCTGCCAGGCATGACTCAAGGAGCCGT
GGGGCCAGGGACGAGTATCTCTCTCCTGCACGATCTAGATCAATTTCACGTTCTCATTCCCCTCGTGATAGAAGGGATTACAGCCGATCTCCAACTCCAAAGGAGAATGG
TCGGAGCCCTCGTGCAGTGGACATTGCACGCAGTAGGTCAAGGAGTCCAAGGGCTGCTAGCCGCAGTCCTTCTGGATCGCGTTCACGTTCCTATAGTTTGGGACAGCAAA
GTTGTTCCTCGCTGATGGATGTGTTTCGGGATCGGCCTCGAGATTTGTTAGTCTGCCTTCAGTTATGGCCAGATGAACTTTGCTATTCCATGCTATGCAGCTTCTGTAAG
GAAATTTTATTTATATGTGAAAGTTGGGAGGCGGGACTTGAGTTGTGGGTTGAAGAACAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGAGATCATTAGGATACGGATCCAGATTCCATATTTCGGGCGCAACTTCCGATTATAAGGGTTTTCTCTGCTTCTTTCGCGTGATTTTCGTTTGCAGGTACTCGAG
GAGACGCAAACAACCCAATATGGCGAGGTACCGAAGCCGGAGCAGAAGTTACAGCCCTCGTCGGCGTAGCCGAACCCCACCACGAGGGCGGAAGCGGTACGACGACGACC
CTAGAGACCGGTACCGCGAAAGCAGGTCTCACAGGGACCGTCGCTCTCCTGCTCCTTCTGGGTTACTCGTGCGTAATCTCCCCCTTGATGCTAGGCCAGAAGATCTTAGG
ATCCCGTTCGAGCGTTTTGGTCCTGTTAAGGATGTGTATCTTCCGAAAAACTACTACACTGGGGAGCCCCGAGGGTTTGGGTTTGTGAAGTTTCGGTTTGCAGAAGATGC
AGCTGAAGCAAAACAACAACTGAATCATACGGTTATAGGTGGACGGGAGATACGAATTGTGTTTGCTGAGGAGAACAGGAAGACTCCACAAGAAATGCGTGTGACTTCAC
GCTCAAGTGGCAGAAGCAGCAGAAGACGTTCTCCAGCAAGGTCTCCGCGACGACGATATCATTCTTACTCACGCTCACCTTCACCTGCCAGGCATGACTCAAGGAGCCGT
GGGGCCAGGGACGAGTATCTCTCTCCTGCACGATCTAGATCAATTTCACGTTCTCATTCCCCTCGTGATAGAAGGGATTACAGCCGATCTCCAACTCCAAAGGAGAATGG
TCGGAGCCCTCGTGCAGTGGACATTGCACGCAGTAGGTCAAGGAGTCCAAGGGCTGCTAGCCGCAGTCCTTCTGGATCGCGTTCACGTTCCTATAGTTTGGGACAGCAAA
GTTGTTCCTCGCTGATGGATGTGTTTCGGGATCGGCCTCGAGATTTGTTAGTCTGCCTTCAGTTATGGCCAGATGAACTTTGCTATTCCATGCTATGCAGCTTCTGTAAG
GAAATTTTATTTATATGTGAAAGTTGGGAGGCGGGACTTGAGTTGTGGGTTGAAGAACAATGAGTGTAGTCTTGCTGTTGTAGTTAACTTCATGTGAGTGCATGCTGGTG
GACTTCTACTTGACAACCTTTACTAGATTTAGATTTTTGGGGTTCAGTGGATTTCGTTTATACTCTTGTATATGTCTAGTGGTTGTATCTGGAAAGTTTAGGATGCTCAA
ATCTTGTTATGGATATTGTCTTGTTTGTTTACCCCAGTTTTGTGTTATTGTTCAGTAATCCCATTTTATATCAGTTCTTAAACTTTTTTTAAATATCCAAGTTTTATTAT
TAAAACTAGAAACAAAATCGTCAGTGACTAGAATTTAAATTTATCCTGCAA
Protein sequenceShow/hide protein sequence
MSRSLGYGSRFHISGATSDYKGFLCFFRVIFVCRYSRRRKQPNMARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLR
IPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSR
GARDEYLSPARSRSISRSHSPRDRRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYSLGQQSCSSLMDVFRDRPRDLLVCLQLWPDELCYSMLCSFCK
EILFICESWEAGLELWVEEQ