; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmaCh14G018290 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh14G018290
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description50S ribosomal protein L28
Genome locationCma_Chr14:13069123..13070926
RNA-Seq ExpressionCmaCh14G018290
SyntenyCmaCh14G018290
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001383 - Ribosomal protein L28
IPR026569 - Ribosomal protein L28/L24
IPR034704 - L28p-like
IPR037147 - Ribosomal protein L28/L24 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7018806.1 50S ribosomal protein L28, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]1.2e-7694.64Show/hide
Query:  KTRGFSTY-----RELRSETMAVSAVLGFTPVSSSGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPISAPLRPALQPVARRVCPFTGK
        KTRGFSTY     RELRSETMAVSAVLGFTPV SSGVMAASSSKLHFR+K NPELGFLSSQLSGIKISSNHSLIS SPISAPLRPALQPVARRVCPFTGK
Subjt:  KTRGFSTY-----RELRSETMAVSAVLGFTPVSSSGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPISAPLRPALQPVARRVCPFTGK

Query:  KANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        KANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  KANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_022924246.1 50S ribosomal protein L28, chloroplastic [Cucurbita moschata]1.1e-6997.3Show/hide
Query:  MAVSAVLGFTPVSSSGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF
        MAVSAVLGFTPV SSGVMAASSSKLHFR+K NPELGFLSSQLSGIKISSNHSLIS SPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF
Subjt:  MAVSAVLGFTPVSSSGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF

Query:  VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_022979375.1 50S ribosomal protein L28, chloroplastic [Cucurbita maxima]1.4e-72100Show/hide
Query:  MAVSAVLGFTPVSSSGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF
        MAVSAVLGFTPVSSSGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF
Subjt:  MAVSAVLGFTPVSSSGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF

Query:  VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_023526300.1 50S ribosomal protein L28, chloroplastic [Cucurbita pepo subsp. pepo]1.0e-7097.97Show/hide
Query:  MAVSAVLGFTPVSSSGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF
        MAVSAVLGFTPV SSGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLIS SPISAPLRPALQPVARRVCPFTGKKAN+KNLVSFSNHKTKKLQF
Subjt:  MAVSAVLGFTPVSSSGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF

Query:  VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_038885053.1 50S ribosomal protein L28, chloroplastic [Benincasa hispida]1.5e-6692.57Show/hide
Query:  MAVSAVLGFTPVSSSGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF
        MA   VLGFTP +SSGVMAASS+KL F TKPN ELGFL+SQL+GIKISSNHSLISPSPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF
Subjt:  MAVSAVLGFTPVSSSGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF

Query:  VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

TrEMBL top hitse value%identityAlignment
A0A0A0L501 Uncharacterized protein1.4e-6287.33Show/hide
Query:  MAVSAVLGFTPVSS-SGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPIS-APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKL
        MA S V GFTP ++ SGVM  SS+KLHFRTKPN +LGFL+SQLSGI+ISSNHSLISP+ IS APLRP+LQPVARR+CPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAVSAVLGFTPVSS-SGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPIS-APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A1S3AWK5 50S ribosomal protein L28, chloroplastic1.5e-6489.33Show/hide
Query:  MAVSAVLGFTP-VSSSGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPIS-APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKL
        MA S V GFTP  +S+GVMA SS+KLHFRTKPN +LGFL+SQLSGIKISSNHSLISPSPIS APLRP+LQP+ARR+CPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAVSAVLGFTP-VSSSGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPIS-APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A5A7U1W6 50S ribosomal protein L281.5e-6489.33Show/hide
Query:  MAVSAVLGFTP-VSSSGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPIS-APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKL
        MA S V GFTP  +S+GVMA SS+KLHFRTKPN +LGFL+SQLSGIKISSNHSLISPSPIS APLRP+LQP+ARR+CPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAVSAVLGFTP-VSSSGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPIS-APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A6J1E916 50S ribosomal protein L28, chloroplastic5.4e-7097.3Show/hide
Query:  MAVSAVLGFTPVSSSGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF
        MAVSAVLGFTPV SSGVMAASSSKLHFR+K NPELGFLSSQLSGIKISSNHSLIS SPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF
Subjt:  MAVSAVLGFTPVSSSGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF

Query:  VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A6J1IT28 50S ribosomal protein L28, chloroplastic6.8e-73100Show/hide
Query:  MAVSAVLGFTPVSSSGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF
        MAVSAVLGFTPVSSSGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF
Subjt:  MAVSAVLGFTPVSSSGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF

Query:  VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

SwissProt top hitse value%identityAlignment
B8HUV7 50S ribosomal protein L288.4e-2064Show/hide
Query:  RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK
        RVC  TGK+AN    VS S+ +TKKLQ VNLQ+K++WW  GKR+V+LRLSTKALKT+E  GLD+ A++AGIDL K
Subjt:  RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK

O22795 50S ribosomal protein L28, chloroplastic2.1e-4271.97Show/hide
Query:  MAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPISAPLRPALQP-VARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRF
        M +S+  +   T  + ELGFL+SQLSG++IS   S +  + IS P  P +QP VARR+CPFTGKKAN+ N VSFSNHKTKKLQFVNLQYK+VWWEAGKRF
Subjt:  MAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPISAPLRPALQP-VARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRF

Query:  VKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VKLRLSTKALKTIEKNGLDAVAKKAGIDLRK+
Subjt:  VKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

P30956 50S ribosomal protein L28, chloroplastic2.0e-4573.55Show/hide
Query:  RTKPNPELGFLSSQLSGIKISSNHSLISPSPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALK
        ++K + EL F++SQLSG+KISS H + S +P+S P +P+LQPVARR+CPFTGKK+N+ N VS SNHKTKKLQFVNLQYK++WWEAGKR+VKLRLSTKA+K
Subjt:  RTKPNPELGFLSSQLSGIKISSNHSLISPSPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALK

Query:  TIEKNGLDAVAKKAGIDLRKE
        TIEKNGLDAVAKKAGIDL K+
Subjt:  TIEKNGLDAVAKKAGIDLRKE

P82245 50S ribosomal protein L28, chloroplastic6.8e-4669.59Show/hide
Query:  VSSSGVMAASSSKLHFR-------TKPN---PELGFLSSQLSGIKISSNHSL-ISPSPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF
        +++SG++ ++ S + FR        KP     ELGFL+SQLSGI+IS +    I   PISAPL+P+LQPVARR+CPFTGKK+NK N VS SNHKTK+LQF
Subjt:  VSSSGVMAASSSKLHFR-------TKPN---PELGFLSSQLSGIKISSNHSL-ISPSPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF

Query:  VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VNLQYK+VWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

Q8DG62 50S ribosomal protein L284.9e-2064Show/hide
Query:  RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK
        RVC  TGKKAN    +S S+ +TKKLQ VNLQ+K+VWW  GKR+V+LRLSTKA+KT+E+ GL A AK+AG+DL K
Subjt:  RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK

Arabidopsis top hitse value%identityAlignment
AT2G33450.1 Ribosomal L28 family1.5e-4371.97Show/hide
Query:  MAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPISAPLRPALQP-VARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRF
        M +S+  +   T  + ELGFL+SQLSG++IS   S +  + IS P  P +QP VARR+CPFTGKKAN+ N VSFSNHKTKKLQFVNLQYK+VWWEAGKRF
Subjt:  MAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPISAPLRPALQP-VARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRF

Query:  VKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VKLRLSTKALKTIEKNGLDAVAKKAGIDLRK+
Subjt:  VKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGCTGGATTTGCCTAAGGCTTTGAAGTTTCATTTCTGTGCTTTCTATAATTTGCTACAACATATCCTTCATGAAGAGTGCAAAAGCCCTCTCCCCCGAAACAAAAC
CAGAGGCTTCTCAACTTACAGAGAACTCCGCTCAGAAACAATGGCAGTTTCCGCAGTCTTAGGCTTTACGCCGGTCAGTTCTTCCGGTGTAATGGCAGCGTCGTCATCGA
AACTTCACTTCAGAACTAAACCCAATCCCGAGCTAGGGTTTCTCTCTTCTCAATTGAGCGGCATCAAAATCTCCTCCAACCACTCGCTGATCTCCCCTTCACCCATTTCT
GCTCCTCTCAGACCTGCGCTTCAACCTGTTGCACGTAGAGTTTGCCCCTTTACTGGGAAGAAAGCAAACAAGAAGAACTTGGTTTCTTTCTCGAACCACAAGACCAAGAA
ATTGCAGTTTGTAAATCTTCAATACAAGAAGGTTTGGTGGGAAGCCGGGAAGCGTTTTGTCAAACTACGCCTGTCAACAAAGGCTTTAAAGACCATTGAGAAGAATGGAC
TTGATGCTGTTGCTAAGAAAGCAGGAATTGATCTTCGTAAGGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGATGCTGGATTTGCCTAAGGCTTTGAAGTTTCATTTCTGTGCTTTCTATAATTTGCTACAACATATCCTTCATGAAGAGTGCAAAAGCCCTCTCCCCCGAAACAAAAC
CAGAGGCTTCTCAACTTACAGAGAACTCCGCTCAGAAACAATGGCAGTTTCCGCAGTCTTAGGCTTTACGCCGGTCAGTTCTTCCGGTGTAATGGCAGCGTCGTCATCGA
AACTTCACTTCAGAACTAAACCCAATCCCGAGCTAGGGTTTCTCTCTTCTCAATTGAGCGGCATCAAAATCTCCTCCAACCACTCGCTGATCTCCCCTTCACCCATTTCT
GCTCCTCTCAGACCTGCGCTTCAACCTGTTGCACGTAGAGTTTGCCCCTTTACTGGGAAGAAAGCAAACAAGAAGAACTTGGTTTCTTTCTCGAACCACAAGACCAAGAA
ATTGCAGTTTGTAAATCTTCAATACAAGAAGGTTTGGTGGGAAGCCGGGAAGCGTTTTGTCAAACTACGCCTGTCAACAAAGGCTTTAAAGACCATTGAGAAGAATGGAC
TTGATGCTGTTGCTAAGAAAGCAGGAATTGATCTTCGTAAGGAATGATTATATAATTCATGCCTTTAATTTTACTCTTAGACTTTGAGGAAGATTTGTCGAATTGCACAA
TCATGTCGTATCCTGCTGGTTTTTGCCTATCCTTGTTGTTAGTAATCTGTTCATTTATGTCACATTATTCTTGTATCCTTGCTTTCCTCCATTTGGCAATGAAGCTGAAA
TCCATCCCTTTTCCTTTCTGGGTTTCATGAATGATACACTCTTTTAGAAGTCCAGCCACACTGATTTTCTCTATATGGACATGTCCCTCAGTTAAAGATAAGATCAATTG
ATAGATAGTGTAGAGAGCTGCAAAACCAGGCTCTAAGAACAGGCATCATCAAATTAGGTATCACTTTTAGGTGACTCTAAAACCTCAAATTTGATTTCTGCATCTTTCCA
TTGCCCTTGAGAACAGCCCACAAGGGCTGCAGTGTGCTGTAGTAGATGAAGCAAGTAATAGCCCTGTAGGTATTTTATTTTGCTGTCACAGGAGAAATATCCTTCTTTAT
GATATCCAAAACTAGTCTTTCAAAATTACCAACAGCACTAGCAAGCTACGAGCTGCCAAGTTTTTCA
Protein sequenceShow/hide protein sequence
MMLDLPKALKFHFCAFYNLLQHILHEECKSPLPRNKTRGFSTYRELRSETMAVSAVLGFTPVSSSGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPIS
APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE