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CmaCh14G019080 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh14G019080
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Descriptionnipped-B-like protein B isoform X1
Genome locationCma_Chr14:13485544..13486218
RNA-Seq ExpressionCmaCh14G019080
SyntenyCmaCh14G019080
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0004386 - helicase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7018874.1 hypothetical protein SDJN02_20747, partial [Cucurbita argyrosperma subsp. argyrosperma]7.0e-1157.35Show/hide
Query:  NASKLKKLKAHGFEMETTTPYVWAEAMSIDSVDICALPNAMTVFLFSLTNIGSRSELAIYKKSSGLDS
        NASKLKKLK+HGFEMETTTPYVWAEAM IDSVDIC LP  +    F +      + L ++ +++ +DS
Subjt:  NASKLKKLKAHGFEMETTTPYVWAEAMSIDSVDICALPNAMTVFLFSLTNIGSRSELAIYKKSSGLDS

KAG7018875.1 hypothetical protein SDJN02_20748, partial [Cucurbita argyrosperma subsp. argyrosperma]8.2e-1292.5Show/hide
Query:  NASKLKKLKAHGFEMETTTPYVWAEAMSIDSVDICALPNA
        NASKLKKLK+HGFE ETTTPYVWAEAM IDSVDICALPNA
Subjt:  NASKLKKLKAHGFEMETTTPYVWAEAMSIDSVDICALPNA

XP_022980297.1 eukaryotic translation initiation factor 5B-like [Cucurbita maxima]9.1e-1192.11Show/hide
Query:  NASKLKKLKAHGFEMETTTPYVWAEAMSIDSVDICALP
        NASKLKKLKAHGFEM+T+TPYVWAEAM IDSVDICALP
Subjt:  NASKLKKLKAHGFEMETTTPYVWAEAMSIDSVDICALP

XP_023528644.1 zinc finger CCCH domain-containing protein 13-like isoform X1 [Cucurbita pepo subsp. pepo]1.1e-1197.37Show/hide
Query:  NASKLKKLKAHGFEMETTTPYVWAEAMSIDSVDICALP
        NASKLKKLKAHGFEMETTTPYVWAEAM IDSVDICALP
Subjt:  NASKLKKLKAHGFEMETTTPYVWAEAMSIDSVDICALP

XP_023528645.1 DEAD-box ATP-dependent RNA helicase 42-like isoform X2 [Cucurbita pepo subsp. pepo]1.1e-1197.37Show/hide
Query:  NASKLKKLKAHGFEMETTTPYVWAEAMSIDSVDICALP
        NASKLKKLKAHGFEMETTTPYVWAEAM IDSVDICALP
Subjt:  NASKLKKLKAHGFEMETTTPYVWAEAMSIDSVDICALP

TrEMBL top hitse value%identityAlignment
A0A1S3AVS9 nipped-B-like protein B isoform X16.4e-1086.84Show/hide
Query:  NASKLKKLKAHGFEMETTTPYVWAEAMSIDSVDICALP
        +ASKLKKL AH FEMETTTPYVWAEAM IDS+DICALP
Subjt:  NASKLKKLKAHGFEMETTTPYVWAEAMSIDSVDICALP

A0A5A7U1F1 Nipped-B-like protein B isoform X16.4e-1086.84Show/hide
Query:  NASKLKKLKAHGFEMETTTPYVWAEAMSIDSVDICALP
        +ASKLKKL AH FEMETTTPYVWAEAM IDS+DICALP
Subjt:  NASKLKKLKAHGFEMETTTPYVWAEAMSIDSVDICALP

A0A5D3D0D4 Nipped-B-like protein B isoform X16.4e-1086.84Show/hide
Query:  NASKLKKLKAHGFEMETTTPYVWAEAMSIDSVDICALP
        +ASKLKKL AH FEMETTTPYVWAEAM IDS+DICALP
Subjt:  NASKLKKLKAHGFEMETTTPYVWAEAMSIDSVDICALP

A0A6J1EA99 pre-mRNA-splicing factor 38B-like isoform X17.5e-1194.74Show/hide
Query:  NASKLKKLKAHGFEMETTTPYVWAEAMSIDSVDICALP
        NASKLKKLKAHGFEMETTT YVWAEAM IDSVDICALP
Subjt:  NASKLKKLKAHGFEMETTTPYVWAEAMSIDSVDICALP

A0A6J1IR02 eukaryotic translation initiation factor 5B-like4.4e-1192.11Show/hide
Query:  NASKLKKLKAHGFEMETTTPYVWAEAMSIDSVDICALP
        NASKLKKLKAHGFEM+T+TPYVWAEAM IDSVDICALP
Subjt:  NASKLKKLKAHGFEMETTTPYVWAEAMSIDSVDICALP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCCGTGCTCGATATCGACACACAAACTCGCTACTGGTTTGGCGGGCTGGCTGCTGCATATGCAATGCTTCCAAATTGAAGAAGCTGAAGGCACACGGATTC
GAGATGGAAACGACAACGCCATATGTATGGGCAGAGGCAATGTCGATTGACTCGGTTGATATCTGCGCTCTACCAAATGCAATGACCGTTTTCTTGTTTAGTTTA
ACGAACATAGGGTCAAGATCTGAACTAGCTATCTATAAAAAGAGTAGTGGTCTTGACTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTCCGTGCTCGATATCGACACACAAACTCGCTACTGGTTTGGCGGGCTGGCTGCTGCATATGCAATGCTTCCAAATTGAAGAAGCTGAAGGCACACGGATTC
GAGATGGAAACGACAACGCCATATGTATGGGCAGAGGCAATGTCGATTGACTCGGTTGATATCTGCGCTCTACCAAATGCAATGACCGTTTTCTTGTTTAGTTTA
ACGAACATAGGGTCAAGATCTGAACTAGCTATCTATAAAAAGAGTAGTGGTCTTGACTCTTGA
Protein sequenceShow/hide protein sequence
MLRARYRHTNSLLVWRAGCCICNASKLKKLKAHGFEMETTTPYVWAEAMSIDSVDICALPNAMTVFLFSLTNIGSRSELAIYKKSSGLDS