CuGenDBv2

Gene ID	CmaCh16G005000
Organism	Cucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic
Genome location	Cma_Chr16:2552944..2553577
RNA-Seq Expression	CmaCh16G005000
Synteny	CmaCh16G005000
Gene Ontology terms	GO:0019684 - photosynthesis, light reaction (biological process) GO:0005886 - plasma membrane (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0048038 - quinone binding (molecular function) GO:0050136 - NADH dehydrogenase (quinone) activity (molecular function) GO:0051287 - NAD binding (molecular function)
InterPro domains	IPR001135 - NADH-quinone oxidoreductase, subunit D IPR022885 - NAD(P)H-quinone oxidoreductase subunit D/H IPR029014 - [NiFe]-hydrogenase, large subunit

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

ALO21902.1 NdhH [Cucurbita cordata]

9.9e-75

99.3

Show/hide

Query:  QKEGDSLARYLVRLGEMTESIKIIQQALEGIPGGPYENLEIRSFDRGQSPEWNDFDYRFISKKPSPTFELAKQELYVRVEAPKGELGIFLIGDQGGFPWR
        QKEGDSLARYLVRLGEMTESIKIIQQALEGIPGGPYENLEIRSFDRG+SPEWNDFDYRFISKKPSPTFELAKQELYVRVEAPKGELGIFLIGDQGGFPWR
Subjt:  QKEGDSLARYLVRLGEMTESIKIIQQALEGIPGGPYENLEIRSFDRGQSPEWNDFDYRFISKKPSPTFELAKQELYVRVEAPKGELGIFLIGDQGGFPWR

Query:  WKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR
        WKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR
Subjt:  WKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR

ALO22118.1 NdhH [Cucurbita ficifolia]

3.4e-75

100

Show/hide

Query:  QKEGDSLARYLVRLGEMTESIKIIQQALEGIPGGPYENLEIRSFDRGQSPEWNDFDYRFISKKPSPTFELAKQELYVRVEAPKGELGIFLIGDQGGFPWR
        QKEGDSLARYLVRLGEMTESIKIIQQALEGIPGGPYENLEIRSFDRGQSPEWNDFDYRFISKKPSPTFELAKQELYVRVEAPKGELGIFLIGDQGGFPWR
Subjt:  QKEGDSLARYLVRLGEMTESIKIIQQALEGIPGGPYENLEIRSFDRGQSPEWNDFDYRFISKKPSPTFELAKQELYVRVEAPKGELGIFLIGDQGGFPWR

Query:  WKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR
        WKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR
Subjt:  WKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR

YP_009447507.1 NADH dehydrogenase subunit 7 [Cucurbita maxima]

3.4e-75

100

Show/hide

Query:  QKEGDSLARYLVRLGEMTESIKIIQQALEGIPGGPYENLEIRSFDRGQSPEWNDFDYRFISKKPSPTFELAKQELYVRVEAPKGELGIFLIGDQGGFPWR
        QKEGDSLARYLVRLGEMTESIKIIQQALEGIPGGPYENLEIRSFDRGQSPEWNDFDYRFISKKPSPTFELAKQELYVRVEAPKGELGIFLIGDQGGFPWR
Subjt:  QKEGDSLARYLVRLGEMTESIKIIQQALEGIPGGPYENLEIRSFDRGQSPEWNDFDYRFISKKPSPTFELAKQELYVRVEAPKGELGIFLIGDQGGFPWR

Query:  WKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR
        WKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR
Subjt:  WKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR

YP_009752206.1 NADH dehydrogenase subunit H [Linnaeosicyos amara]

9.9e-75

99.3

Show/hide

Query:  QKEGDSLARYLVRLGEMTESIKIIQQALEGIPGGPYENLEIRSFDRGQSPEWNDFDYRFISKKPSPTFELAKQELYVRVEAPKGELGIFLIGDQGGFPWR
        QKEGDSLARYLVRLGEMTESIKIIQQALEGIPGGPYENLEIRSFDRG+SPEWNDFDYRFISKKPSPTFELAKQELYVRVEAPKGELGIFLIGDQGGFPWR
Subjt:  QKEGDSLARYLVRLGEMTESIKIIQQALEGIPGGPYENLEIRSFDRGQSPEWNDFDYRFISKKPSPTFELAKQELYVRVEAPKGELGIFLIGDQGGFPWR

Query:  WKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR
        WKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR
Subjt:  WKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR

YP_009753922.1 NADH dehydrogenase subunit H [Trichosanthes lobata]

9.9e-75

99.3

Show/hide

Query:  QKEGDSLARYLVRLGEMTESIKIIQQALEGIPGGPYENLEIRSFDRGQSPEWNDFDYRFISKKPSPTFELAKQELYVRVEAPKGELGIFLIGDQGGFPWR
        QKEGDSLARYLVRLGEMTESIKIIQQALEGIPGGPYENLEIRSFDRG+SPEWNDFDYRFISKKPSPTFELAKQELYVRVEAPKGELGIFLIGDQGGFPWR
Subjt:  QKEGDSLARYLVRLGEMTESIKIIQQALEGIPGGPYENLEIRSFDRGQSPEWNDFDYRFISKKPSPTFELAKQELYVRVEAPKGELGIFLIGDQGGFPWR

Query:  WKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR
        WKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR
Subjt:  WKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR

TrEMBL top hits

e value

%identity

Alignment

A0A0S2IDX8 NADH-quinone oxidoreductase subunit D

1.7e-75

100

Show/hide

Query:  QKEGDSLARYLVRLGEMTESIKIIQQALEGIPGGPYENLEIRSFDRGQSPEWNDFDYRFISKKPSPTFELAKQELYVRVEAPKGELGIFLIGDQGGFPWR
        QKEGDSLARYLVRLGEMTESIKIIQQALEGIPGGPYENLEIRSFDRGQSPEWNDFDYRFISKKPSPTFELAKQELYVRVEAPKGELGIFLIGDQGGFPWR
Subjt:  QKEGDSLARYLVRLGEMTESIKIIQQALEGIPGGPYENLEIRSFDRGQSPEWNDFDYRFISKKPSPTFELAKQELYVRVEAPKGELGIFLIGDQGGFPWR

Query:  WKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR
        WKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR
Subjt:  WKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR

A0A0S2IFL3 NADH-quinone oxidoreductase subunit D

1.7e-75

100

Show/hide

Query:  QKEGDSLARYLVRLGEMTESIKIIQQALEGIPGGPYENLEIRSFDRGQSPEWNDFDYRFISKKPSPTFELAKQELYVRVEAPKGELGIFLIGDQGGFPWR
        QKEGDSLARYLVRLGEMTESIKIIQQALEGIPGGPYENLEIRSFDRGQSPEWNDFDYRFISKKPSPTFELAKQELYVRVEAPKGELGIFLIGDQGGFPWR
Subjt:  QKEGDSLARYLVRLGEMTESIKIIQQALEGIPGGPYENLEIRSFDRGQSPEWNDFDYRFISKKPSPTFELAKQELYVRVEAPKGELGIFLIGDQGGFPWR

Query:  WKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR
        WKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR
Subjt:  WKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR

A0A0S2IGT2 NADH-quinone oxidoreductase subunit D

1.7e-75

100

Show/hide

Query:  QKEGDSLARYLVRLGEMTESIKIIQQALEGIPGGPYENLEIRSFDRGQSPEWNDFDYRFISKKPSPTFELAKQELYVRVEAPKGELGIFLIGDQGGFPWR
        QKEGDSLARYLVRLGEMTESIKIIQQALEGIPGGPYENLEIRSFDRGQSPEWNDFDYRFISKKPSPTFELAKQELYVRVEAPKGELGIFLIGDQGGFPWR
Subjt:  QKEGDSLARYLVRLGEMTESIKIIQQALEGIPGGPYENLEIRSFDRGQSPEWNDFDYRFISKKPSPTFELAKQELYVRVEAPKGELGIFLIGDQGGFPWR

Query:  WKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR
        WKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR
Subjt:  WKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR

A0A0S2IHJ6 NADH-quinone oxidoreductase subunit D

1.7e-75

100

Show/hide

Query:  QKEGDSLARYLVRLGEMTESIKIIQQALEGIPGGPYENLEIRSFDRGQSPEWNDFDYRFISKKPSPTFELAKQELYVRVEAPKGELGIFLIGDQGGFPWR
        QKEGDSLARYLVRLGEMTESIKIIQQALEGIPGGPYENLEIRSFDRGQSPEWNDFDYRFISKKPSPTFELAKQELYVRVEAPKGELGIFLIGDQGGFPWR
Subjt:  QKEGDSLARYLVRLGEMTESIKIIQQALEGIPGGPYENLEIRSFDRGQSPEWNDFDYRFISKKPSPTFELAKQELYVRVEAPKGELGIFLIGDQGGFPWR

Query:  WKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR
        WKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR
Subjt:  WKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR

A0A2H4T223 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

1.7e-75

100

Show/hide

Query:  QKEGDSLARYLVRLGEMTESIKIIQQALEGIPGGPYENLEIRSFDRGQSPEWNDFDYRFISKKPSPTFELAKQELYVRVEAPKGELGIFLIGDQGGFPWR
        QKEGDSLARYLVRLGEMTESIKIIQQALEGIPGGPYENLEIRSFDRGQSPEWNDFDYRFISKKPSPTFELAKQELYVRVEAPKGELGIFLIGDQGGFPWR
Subjt:  QKEGDSLARYLVRLGEMTESIKIIQQALEGIPGGPYENLEIRSFDRGQSPEWNDFDYRFISKKPSPTFELAKQELYVRVEAPKGELGIFLIGDQGGFPWR

Query:  WKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR
        WKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR
Subjt:  WKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR

SwissProt top hits

e value

%identity

Alignment

A4QLG5 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

5.7e-73

92.96

Show/hide

Query:  QKEGDSLARYLVRLGEMTESIKIIQQALEGIPGGPYENLEIRSFDRGQSPEWNDFDYRFISKKPSPTFELAKQELYVRVEAPKGELGIFLIGDQGGFPWR
        QK+GDSLARYLVRL EMTESIKIIQQALEG+PGGPYENLE RSFDR ++PEWNDFDYRFISKKPSPTFEL+KQELYVRVEAPKGELGIFLIGDQ GFPWR
Subjt:  QKEGDSLARYLVRLGEMTESIKIIQQALEGIPGGPYENLEIRSFDRGQSPEWNDFDYRFISKKPSPTFELAKQELYVRVEAPKGELGIFLIGDQGGFPWR

Query:  WKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR
        WKIRPPGFINLQILP+LVKRMKLADIMTILGSIDIIMGEVDR
Subjt:  WKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR

B0Z515 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

2.2e-72

89.4

Show/hide

Query:  GEMTESIR-QKEGDSLARYLVRLGEMTESIKIIQQALEGIPGGPYENLEIRSFDRGQSPEWNDFDYRFISKKPSPTFELAKQELYVRVEAPKGELGIFLI
        GE+   IR QKEGDSLARYLVR+ EMTESIKIIQQALEGIPGGPYENLEIR FDR + PEW+ F+YRFISKKPSPTFEL KQELYVRVEAPKGELGIFLI
Subjt:  GEMTESIR-QKEGDSLARYLVRLGEMTESIKIIQQALEGIPGGPYENLEIRSFDRGQSPEWNDFDYRFISKKPSPTFELAKQELYVRVEAPKGELGIFLI

Query:  GDQGGFPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR
        GDQ GFPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR
Subjt:  GDQGGFPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR

B1A990 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

1.9e-73

94.37

Show/hide

Query:  QKEGDSLARYLVRLGEMTESIKIIQQALEGIPGGPYENLEIRSFDRGQSPEWNDFDYRFISKKPSPTFELAKQELYVRVEAPKGELGIFLIGDQGGFPWR
        QKEGDSLARYLVR+ EMTESIKIIQQALEGIPGGPYENLEIR FDR + PEWNDFDYRFISKKPSPTFEL KQELYVRVEAPKGELGIFLIGDQ GFPWR
Subjt:  QKEGDSLARYLVRLGEMTESIKIIQQALEGIPGGPYENLEIRSFDRGQSPEWNDFDYRFISKKPSPTFELAKQELYVRVEAPKGELGIFLIGDQGGFPWR

Query:  WKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR
        WKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR
Subjt:  WKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR

Q09WW2 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

3.9e-74

95.07

Show/hide

Query:  QKEGDSLARYLVRLGEMTESIKIIQQALEGIPGGPYENLEIRSFDRGQSPEWNDFDYRFISKKPSPTFELAKQELYVRVEAPKGELGIFLIGDQGGFPWR
        QKEGDSLARYLVR+GEMTESIKIIQQALEGIPGGPYENLEIR FDR ++PEWNDFDYRFISKKPSPTFEL KQELYVRVEAPKGELGIFLIGDQ GFPWR
Subjt:  QKEGDSLARYLVRLGEMTESIKIIQQALEGIPGGPYENLEIRSFDRGQSPEWNDFDYRFISKKPSPTFELAKQELYVRVEAPKGELGIFLIGDQGGFPWR

Query:  WKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR
        WKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR
Subjt:  WKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR

Q4VZL2 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

4.2e-76

97.18

Show/hide

Query:  QKEGDSLARYLVRLGEMTESIKIIQQALEGIPGGPYENLEIRSFDRGQSPEWNDFDYRFISKKPSPTFELAKQELYVRVEAPKGELGIFLIGDQGGFPWR
        QKEGDSLARYLVRL EMTES+KIIQQALEGIPGGPYENLEIRSFDR +SPEWNDFDYRFISKKPSPTFELAKQELYVRVEAPKGELGIFLIGDQGGFPWR
Subjt:  QKEGDSLARYLVRLGEMTESIKIIQQALEGIPGGPYENLEIRSFDRGQSPEWNDFDYRFISKKPSPTFELAKQELYVRVEAPKGELGIFLIGDQGGFPWR

Query:  WKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR
        WKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR
Subjt:  WKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR

Arabidopsis top hits

e value

%identity

Alignment

ATCG01110.1 NAD(P)H dehydrogenase subunit H

3.4e-73

91.55

Show/hide

Query:  QKEGDSLARYLVRLGEMTESIKIIQQALEGIPGGPYENLEIRSFDRGQSPEWNDFDYRFISKKPSPTFELAKQELYVRVEAPKGELGIFLIGDQGGFPWR
        QK+GDSLARYLVRL EMTESIKIIQQALEG+PGGPYENLE R FDR ++PEWNDF+YRFISKKPSPTFEL+KQELYVRVEAPKGELGIFLIGDQ GFPWR
Subjt:  QKEGDSLARYLVRLGEMTESIKIIQQALEGIPGGPYENLEIRSFDRGQSPEWNDFDYRFISKKPSPTFELAKQELYVRVEAPKGELGIFLIGDQGGFPWR

Query:  WKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR
        WKIRPPGFINLQILP+LVKRMKLADIMTILGSIDIIMGEVDR
Subjt:  WKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR

ATMG00510.1 NADH dehydrogenase subunit 7

4.5e-17

36.99

Show/hide

Query:  GDSLARYLVRLGEMTESIKIIQQALEGIPGGPYENLEIRSFDRGQSPEWNDFDYRFISKKPSPTFELAKQ-------ELYVRVEAPKGELGIFLIGDQGG
        GD   RY +R+ EM +S++II Q L  +P G      I++ DR   P  +    +   +     FEL  +         Y  VEAPKGE G+FL+ +   
Subjt:  GDSLARYLVRLGEMTESIKIIQQALEGIPGGPYENLEIRSFDRGQSPEWNDFDYRFISKKPSPTFELAKQ-------ELYVRVEAPKGELGIFLIGDQGG

Query:  FPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR
         P+R KIR PG  + Q L  + K    AD++TI+G+ DI+ GEVDR
Subjt:  FPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTGCGACCTGGTTCAGTGGCAAAAAGAAGGAGATTCATTAGCTCGTTATTTAGTCAGACTTGGTGAGATGACGGAATCCATAAGGCAAAAAGAAGGAGATTCATTAGC
TCGTTATTTAGTCAGACTTGGTGAGATGACGGAATCCATAAAAATTATTCAACAAGCTTTGGAAGGAATTCCAGGGGGACCTTATGAAAATTTAGAAATACGATCTTTTG
ATCGAGGACAGTCTCCGGAATGGAATGACTTTGACTATCGATTCATTAGTAAAAAACCTTCGCCAACTTTTGAATTGGCGAAACAAGAACTTTATGTGAGAGTCGAAGCC
CCAAAAGGGGAATTGGGCATTTTTTTGATAGGGGATCAGGGTGGTTTTCCTTGGAGATGGAAAATTCGCCCGCCGGGTTTTATCAATTTGCAAATTCTTCCTCAGTTAGT
TAAAAGAATGAAATTGGCTGATATTATGACAATACTAGGTAGCATAGATATCATTATGGGAGAAGTTGATCGTTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MCDLVQWQKEGDSLARYLVRLGEMTESIRQKEGDSLARYLVRLGEMTESIKIIQQALEGIPGGPYENLEIRSFDRGQSPEWNDFDYRFISKKPSPTFELAKQELYVRVEA
PKGELGIFLIGDQGGFPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR

CmaCh16G005000 (gene) of Cucurbita maxima (Rimu) v1.1 genome