; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmaCh16G007750 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh16G007750
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionPMD domain-containing protein
Genome locationCma_Chr16:4250086..4251583
RNA-Seq ExpressionCmaCh16G007750
SyntenyCmaCh16G007750
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577368.1 hypothetical protein SDJN03_24942, partial [Cucurbita argyrosperma subsp. sororia]2.1e-7398.62Show/hide
Query:  MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFVSPNTVP
        MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKF+SPNTVP
Subjt:  MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFVSPNTVP

Query:  TSYASDFSVLMPGQHIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
        TSYASDFSVLMPGQ IPTFIAQPAPLPCQRERIYWPSHDHNFLGP
Subjt:  TSYASDFSVLMPGQHIPTFIAQPAPLPCQRERIYWPSHDHNFLGP

XP_022929236.1 uncharacterized protein LOC111435885 isoform X2 [Cucurbita moschata]6.0e-7397.93Show/hide
Query:  MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFVSPNTVP
        MSEVGSERS+SWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKF+SPNTVP
Subjt:  MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFVSPNTVP

Query:  TSYASDFSVLMPGQHIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
        TSYASDFSVLMPGQ IPTFIAQPAPLPCQRERIYWPSHDHNFLGP
Subjt:  TSYASDFSVLMPGQHIPTFIAQPAPLPCQRERIYWPSHDHNFLGP

XP_022984564.1 uncharacterized protein LOC111482824 isoform X1 [Cucurbita maxima]8.2e-7082.86Show/hide
Query:  MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFVSPNT--
        MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFVSPNT  
Subjt:  MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFVSPNT--

Query:  ----------------------------VPTSYASDFSVLMPGQHIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
                                    VPTSYASDFSVLMPGQHIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
Subjt:  ----------------------------VPTSYASDFSVLMPGQHIPTFIAQPAPLPCQRERIYWPSHDHNFLGP

XP_022984567.1 uncharacterized protein LOC111482824 isoform X2 [Cucurbita maxima]1.4e-74100Show/hide
Query:  MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFVSPNTVP
        MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFVSPNTVP
Subjt:  MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFVSPNTVP

Query:  TSYASDFSVLMPGQHIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
        TSYASDFSVLMPGQHIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
Subjt:  TSYASDFSVLMPGQHIPTFIAQPAPLPCQRERIYWPSHDHNFLGP

XP_023552325.1 uncharacterized protein LOC111810023 [Cucurbita pepo subsp. pepo]3.0e-7297.93Show/hide
Query:  MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFVSPNTVP
        MSEVGSERSKSWNIYTTSEQSPSSSQT IGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKF S NTVP
Subjt:  MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFVSPNTVP

Query:  TSYASDFSVLMPGQHIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
        TSYASDFSVLMPGQHIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
Subjt:  TSYASDFSVLMPGQHIPTFIAQPAPLPCQRERIYWPSHDHNFLGP

TrEMBL top hitse value%identityAlignment
A0A6J1EM82 uncharacterized protein LOC111435885 isoform X11.7e-6881.14Show/hide
Query:  MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFVSPNT--
        MSEVGSERS+SWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKF+SPNT  
Subjt:  MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFVSPNT--

Query:  ----------------------------VPTSYASDFSVLMPGQHIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
                                    VPTSYASDFSVLMPGQ IPTFIAQPAPLPCQRERIYWPSHDHNFLGP
Subjt:  ----------------------------VPTSYASDFSVLMPGQHIPTFIAQPAPLPCQRERIYWPSHDHNFLGP

A0A6J1EMJ9 uncharacterized protein LOC111435885 isoform X22.9e-7397.93Show/hide
Query:  MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFVSPNTVP
        MSEVGSERS+SWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKF+SPNTVP
Subjt:  MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFVSPNTVP

Query:  TSYASDFSVLMPGQHIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
        TSYASDFSVLMPGQ IPTFIAQPAPLPCQRERIYWPSHDHNFLGP
Subjt:  TSYASDFSVLMPGQHIPTFIAQPAPLPCQRERIYWPSHDHNFLGP

A0A6J1FV27 uncharacterized protein LOC1114475412.2e-6589.73Show/hide
Query:  MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSS-EVTNNSAESGPAEKFVSPNTV
        MSE+GSERSKSWNIYTT +QSP SSQTGIGQ+APWK+FGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTS FSSS EVTNN A+SGP EKF SPNTV
Subjt:  MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSS-EVTNNSAESGPAEKFVSPNTV

Query:  PTSYASDFSVLMPGQHIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
        PTSYA+DFSVLMPGQHIPTFIAQPAPLPCQRE  YWPSHDHNFLGP
Subjt:  PTSYASDFSVLMPGQHIPTFIAQPAPLPCQRERIYWPSHDHNFLGP

A0A6J1J2I5 uncharacterized protein LOC111482824 isoform X27.0e-75100Show/hide
Query:  MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFVSPNTVP
        MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFVSPNTVP
Subjt:  MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFVSPNTVP

Query:  TSYASDFSVLMPGQHIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
        TSYASDFSVLMPGQHIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
Subjt:  TSYASDFSVLMPGQHIPTFIAQPAPLPCQRERIYWPSHDHNFLGP

A0A6J1JAW6 uncharacterized protein LOC111482824 isoform X14.0e-7082.86Show/hide
Query:  MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFVSPNT--
        MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFVSPNT  
Subjt:  MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFVSPNT--

Query:  ----------------------------VPTSYASDFSVLMPGQHIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
                                    VPTSYASDFSVLMPGQHIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
Subjt:  ----------------------------VPTSYASDFSVLMPGQHIPTFIAQPAPLPCQRERIYWPSHDHNFLGP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G09812.1 unknown protein8.5e-2551.88Show/hide
Query:  RSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRP-TSPFSSSEVTNNSAESGPA--EKFV-SPNTVPTSY
        +S SW+IY+  E            E PW+S  +SMNAISFGFVATAILISMFLIMAIFEHLFRP  S F S          G +  +K     + VP S 
Subjt:  RSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRP-TSPFSSSEVTNNSAESGPA--EKFV-SPNTVPTSY

Query:  ASDFSVLMPGQHIPTFIAQPAPLPCQRERIYWP
          D SV+MPG+ +P+ IA PAPLPC+RE I+WP
Subjt:  ASDFSVLMPGQHIPTFIAQPAPLPCQRERIYWP

AT1G11120.1 unknown protein2.3e-1739.1Show/hide
Query:  PSSSQTGIGQEAPWKS-FGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSP------------------------------FSSSEVTNN------S
        P  +   + +E PWKS F  S+NA+SFGFVATAILISMFL+MAIFE L R T+                               + S + +NN      S
Subjt:  PSSSQTGIGQEAPWKS-FGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSP------------------------------FSSSEVTNN------S

Query:  AESGPAEKFVSPNTVPTSYASDFSVLMPGQHIPTFIAQPAPLPCQRERIYWPSHDH
             +E F+      T Y++  SVLMPG  IPTFIA PAP+PC  + I    H H
Subjt:  AESGPAEKFVSPNTVPTSYASDFSVLMPGQHIPTFIAQPAPLPCQRERIYWPSHDH

AT1G11120.2 unknown protein9.8e-2145.38Show/hide
Query:  PSSSQTGIGQEAPWKS-FGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNS----------AESGPAEKFVSPNTVPTSYASDFSVL
        P  +   + +E PWKS F  S+NA+SFGFVATAILISMFL+MAIFE L R T+  +++  +++S            +G A K    +   T Y++  SVL
Subjt:  PSSSQTGIGQEAPWKS-FGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNS----------AESGPAEKFVSPNTVPTSYASDFSVL

Query:  MPGQHIPTFIAQPAPLPCQRERIYWPSHDH
        MPG  IPTFIA PAP+PC  + I    H H
Subjt:  MPGQHIPTFIAQPAPLPCQRERIYWPSHDH

AT1G58007.1 unknown protein2.0e-2148.87Show/hide
Query:  SERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFVSPNTVPTSYAS
        S   ++W+IY T + S                 GSSMNAISFGFVATAILI MF+IMAI EHLFR +   SS +V ++S     AEK    + VP +  S
Subjt:  SERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFVSPNTVPTSYAS

Query:  DFSVLMPGQHIPTFIAQPAPLPCQRERIYWPSH
        D SV+MPG  +P+++A PAP PC+RE I WPSH
Subjt:  DFSVLMPGQHIPTFIAQPAPLPCQRERIYWPSH

AT1G58007.2 unknown protein2.0e-2148.87Show/hide
Query:  SERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFVSPNTVPTSYAS
        S   ++W+IY T + S                 GSSMNAISFGFVATAILI MF+IMAI EHLFR +   SS +V ++S     AEK    + VP +  S
Subjt:  SERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFVSPNTVPTSYAS

Query:  DFSVLMPGQHIPTFIAQPAPLPCQRERIYWPSH
        D SV+MPG  +P+++A PAP PC+RE I WPSH
Subjt:  DFSVLMPGQHIPTFIAQPAPLPCQRERIYWPSH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGAGGTTGGGTCTGAAAGATCAAAGTCATGGAACATATACACAACTTCAGAGCAGAGCCCATCATCATCTCAAACAGGCATTGGTCAAGAAGCTCCATGGAAGAG
CTTCGGATCATCCATGAATGCCATTTCCTTTGGCTTTGTTGCCACTGCAATCTTGATATCAATGTTCCTTATCATGGCAATCTTTGAGCATCTGTTTAGACCAACATCTC
CTTTCTCCTCATCTGAAGTGACCAACAACTCCGCAGAATCAGGTCCTGCCGAGAAATTCGTAAGTCCTAATACGGTGCCAACATCATATGCGTCTGATTTCTCAGTGTTG
ATGCCAGGGCAGCACATCCCCACCTTCATTGCGCAACCAGCTCCTCTGCCATGCCAAAGAGAGAGGATTTATTGGCCATCTCATGACCATAATTTTTTAGGTCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGAGGTTGGGTCTGAAAGATCAAAGTCATGGAACATATACACAACTTCAGAGCAGAGCCCATCATCATCTCAAACAGGCATTGGTCAAGAAGCTCCATGGAAGAG
CTTCGGATCATCCATGAATGCCATTTCCTTTGGCTTTGTTGCCACTGCAATCTTGATATCAATGTTCCTTATCATGGCAATCTTTGAGCATCTGTTTAGACCAACATCTC
CTTTCTCCTCATCTGAAGTGACCAACAACTCCGCAGAATCAGGTCCTGCCGAGAAATTCGTAAGTCCTAATACGGTGCCAACATCATATGCGTCTGATTTCTCAGTGTTG
ATGCCAGGGCAGCACATCCCCACCTTCATTGCGCAACCAGCTCCTCTGCCATGCCAAAGAGAGAGGATTTATTGGCCATCTCATGACCATAATTTTTTAGGTCCTTGAGG
CAAACTTTCAGCTTTGCCACCATAGAAAGCAGTTACTGTATTTAGGAAAACTATCAGCTTTGCTTCTTCTCAGAATAATACTACTTTGTGCTTCTTCACCCACAGGGAGA
TTTGCCAAATGCTGATACTTTTCTGTTCCCAGTTTCTCATCTGTAAATTGATTATCAAAGAAGTCAGCAGTATTTAC
Protein sequenceShow/hide protein sequence
MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFVSPNTVPTSYASDFSVL
MPGQHIPTFIAQPAPLPCQRERIYWPSHDHNFLGP