CuGenDBv2

Gene ID	CmaCh17G006010
Organism	Cucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description	Ribosomal L18p/L5e family protein
Genome location	Cma_Chr17:5016083..5016463
RNA-Seq Expression	CmaCh17G006010
Synteny	CmaCh17G006010
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0008097 - 5S rRNA binding (molecular function)
InterPro domains	IPR005484 - Ribosomal protein L18

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8646622.1 hypothetical protein Csa_005380 [Cucumis sativus]

2.9e-55

91.87

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Query:  MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYYHSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRNR
        MSINQNHLLRLVLSCRKITAQVTNP TS+IIAMASSSEQEFVAYY SKLHRFPRSNNFWDSK+ASRVGEKLGHRLKEIGVSDVRIDLAEELSRP+YYR  
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYYHSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRNR

Query:  VLPLFDSVRRSGVAVNGAEKLGS
        VLPLFDSV+RSGVAV+GAEKLG+
Subjt:  VLPLFDSVRRSGVAVNGAEKLGS

XP_004140885.1 uncharacterized protein LOC101204363 [Cucumis sativus]

1.5e-56

91.27

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Query:  MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYYHSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRNR
        MSINQNHLLRLVLSCRKITAQVTNP TS+IIAMASSSEQEFVAYY SKLHRFPRSNNFWDSK+ASRVGEKLGHRLKEIGVSDVRIDLAEELSRP+YYR  
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYYHSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRNR

Query:  VLPLFDSVRRSGVAVNGAEKLGSGAI
        VLPLFDSV+RSGVAV+GAEKLG+G+I
Subjt:  VLPLFDSVRRSGVAVNGAEKLGSGAI

XP_022929860.1 uncharacterized protein LOC111436340 [Cucurbita moschata]

3.3e-59

97.62

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Query:  MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYYHSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRNR
        MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAY  SKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPV YRNR
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYYHSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRNR

Query:  VLPLFDSVRRSGVAVNGAEKLGSGAI
        VLPLFDSVRRSGVAVNGAEKLGSGAI
Subjt:  VLPLFDSVRRSGVAVNGAEKLGSGAI

XP_022992443.1 uncharacterized protein LOC111488745 [Cucurbita maxima]

3.2e-62

100

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Query:  MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYYHSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRNR
        MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYYHSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRNR
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYYHSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRNR

Query:  VLPLFDSVRRSGVAVNGAEKLGSGAI
        VLPLFDSVRRSGVAVNGAEKLGSGAI
Subjt:  VLPLFDSVRRSGVAVNGAEKLGSGAI

XP_023548825.1 uncharacterized protein LOC111807360 [Cucurbita pepo subsp. pepo]

2.7e-61

99.21

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Query:  MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYYHSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRNR
        MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYY SKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRNR
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYYHSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRNR

Query:  VLPLFDSVRRSGVAVNGAEKLGSGAI
        VLPLFDSVRRSGVAVNGAEKLGSGAI
Subjt:  VLPLFDSVRRSGVAVNGAEKLGSGAI

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KE39 Uncharacterized protein

7.4e-57

91.27

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Query:  MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYYHSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRNR
        MSINQNHLLRLVLSCRKITAQVTNP TS+IIAMASSSEQEFVAYY SKLHRFPRSNNFWDSK+ASRVGEKLGHRLKEIGVSDVRIDLAEELSRP+YYR  
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYYHSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRNR

Query:  VLPLFDSVRRSGVAVNGAEKLGSGAI
        VLPLFDSV+RSGVAV+GAEKLG+G+I
Subjt:  VLPLFDSVRRSGVAVNGAEKLGSGAI

A0A1S4DVU4 uncharacterized protein LOC103488672

3.1e-55

88.89

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Query:  MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYYHSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRNR
        MSINQNHLLRLVLSCRKITAQVTNP TS+IIAMASSSEQEFVAYY SKLHRFPRSNNFWDSK+ASRVG KLGHRLKEIGVSDVRIDLAEELSRP+YYR  
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYYHSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRNR

Query:  VLPLFDSVRRSGVAVNGAEKLGSGAI
        VLPLFDSV+RSG+AV+G EKLG G+I
Subjt:  VLPLFDSVRRSGVAVNGAEKLGSGAI

A0A5D3BWW4 Uncharacterized protein

3.1e-55

88.89

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Query:  MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYYHSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRNR
        MSINQNHLLRLVLSCRKITAQVTNP TS+IIAMASSSEQEFVAYY SKLHRFPRSNNFWDSK+ASRVG KLGHRLKEIGVSDVRIDLAEELSRP+YYR  
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYYHSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRNR

Query:  VLPLFDSVRRSGVAVNGAEKLGSGAI
        VLPLFDSV+RSG+AV+G EKLG G+I
Subjt:  VLPLFDSVRRSGVAVNGAEKLGSGAI

A0A6J1EVG7 uncharacterized protein LOC111436340

1.6e-59

97.62

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Query:  MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYYHSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRNR
        MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAY  SKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPV YRNR
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYYHSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRNR

Query:  VLPLFDSVRRSGVAVNGAEKLGSGAI
        VLPLFDSVRRSGVAVNGAEKLGSGAI
Subjt:  VLPLFDSVRRSGVAVNGAEKLGSGAI

A0A6J1JZ79 uncharacterized protein LOC111488745

1.5e-62

100

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Query:  MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYYHSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRNR
        MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYYHSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRNR
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYYHSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRNR

Query:  VLPLFDSVRRSGVAVNGAEKLGSGAI
        VLPLFDSVRRSGVAVNGAEKLGSGAI
Subjt:  VLPLFDSVRRSGVAVNGAEKLGSGAI

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G43310.1 Ribosomal L18p/L5e family protein

2.5e-41

69.49

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Query:  NQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYYHSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRNRVLP
        +++HLL+LVLSCRKITAQVT P +STIIAMASSSEQEF+A   + L+RFP SN+FWDSK ASRVGEKLG RL+E+GV  V ID  EE+SRP+++R RVLP
Subjt:  NQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYYHSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRNRVLP

Query:  LFDSVRRSGVAVNGAEKL
        LFDSVRR+G+ V+G E+L
Subjt:  LFDSVRRSGVAVNGAEKL

Sequences

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CDS sequence

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ATGTCCATTAACCAGAACCACCTCCTCCGCCTCGTTCTTTCCTGCCGGAAAATCACCGCTCAGGTCACCAATCCAGACACCTCCACTATCATCGCTATGGCATCCTCCTC
CGAGCAGGAATTCGTCGCGTATTACCACTCTAAACTCCACCGCTTTCCTCGATCCAACAACTTTTGGGACTCCAAAATCGCCTCTCGCGTCGGCGAAAAGCTCGGCCACC
GTTTGAAGGAGATCGGTGTCTCCGATGTTCGGATTGATCTCGCCGAAGAACTTTCCCGCCCTGTGTACTATCGAAATAGGGTTCTGCCGCTCTTCGATTCTGTTCGGCGC
TCTGGCGTCGCTGTCAATGGTGCTGAGAAGCTTGGATCAGGTGCGATCTAG

mRNA sequence

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Protein sequence

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MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYYHSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRNRVLPLFDSVRR
SGVAVNGAEKLGSGAI

CmaCh17G006010 (gene) of Cucurbita maxima (Rimu) v1.1 genome