CuGenDBv2

Gene ID	CmaCh17G013630
Organism	Cucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description	pre-rRNA-processing protein TSR1 homolog
Genome location	Cma_Chr17:9123377..9125354
RNA-Seq Expression	CmaCh17G013630
Synteny	CmaCh17G013630
Gene Ontology terms	GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0000479 - endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0005730 - nucleolus (cellular component) GO:0030688 - preribosome, small subunit precursor (cellular component) GO:0003924 - GTPase activity (molecular function) GO:0005525 - GTP binding (molecular function) GO:0034511 - U3 snoRNA binding (molecular function)
InterPro domains	IPR039761 - Ribosome biogenesis protein Bms1/Tsr1

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6576073.1 Pre-rRNA-processing protein TSR1-like protein, partial [Cucurbita argyrosperma subsp. sororia]

8.2e-78

94.92

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Query:  MGGNRAQVNKPHKSRFSSKATRQQHKTSLTDRGKVTKNNVAKGARAARLQRSKMIREQKRAAVLQEKRALSGSKSPPRVIVLLGLSASVDLNPLAEDLSS
        MG NRAQVNKPHKSRFSSKATRQQHKTSLTDR KVTKNNVAKGARAARLQRSKMIREQKRAAVLQ+KRALSGSKS PRVIVLLGLSASVDLNPLAEDL S
Subjt:  MGGNRAQVNKPHKSRFSSKATRQQHKTSLTDRGKVTKNNVAKGARAARLQRSKMIREQKRAAVLQEKRALSGSKSPPRVIVLLGLSASVDLNPLAEDLSS

Query:  LLTPGASSSTVASSEYKLRATVLKAPYSDLHSCIEMAKVADLIAFVVSASYYIERSTTLYIDSFGSECLSVLRSLGL
        LLTPGASSSTVASSEYKLRATVLKAPYSDL SC+EMAKVADLIAFVVSASYYIE ST+LYIDSFGSECLSVLRSLGL
Subjt:  LLTPGASSSTVASSEYKLRATVLKAPYSDLHSCIEMAKVADLIAFVVSASYYIERSTTLYIDSFGSECLSVLRSLGL

XP_022953484.1 LOW QUALITY PROTEIN: pre-rRNA-processing protein TSR1 homolog [Cucurbita moschata]

8.2e-78

94.92

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Query:  MGGNRAQVNKPHKSRFSSKATRQQHKTSLTDRGKVTKNNVAKGARAARLQRSKMIREQKRAAVLQEKRALSGSKSPPRVIVLLGLSASVDLNPLAEDLSS
        MGGNRAQVNKPHKSRFSSKATRQQHKTSLTDR KVTKNNVAKGARAARLQ S MIREQKRAAVLQ+KRALSGSKSPPRVIVLLGLSASVDLNPLAEDL S
Subjt:  MGGNRAQVNKPHKSRFSSKATRQQHKTSLTDRGKVTKNNVAKGARAARLQRSKMIREQKRAAVLQEKRALSGSKSPPRVIVLLGLSASVDLNPLAEDLSS

Query:  LLTPGASSSTVASSEYKLRATVLKAPYSDLHSCIEMAKVADLIAFVVSASYYIERSTTLYIDSFGSECLSVLRSLGL
        LLTPGASSSTVASSEYKLRATVLKAPYSDL SC EMAKVADLIAFVVSASYYIE ST+LYIDSFGSECLSVLRSLGL
Subjt:  LLTPGASSSTVASSEYKLRATVLKAPYSDLHSCIEMAKVADLIAFVVSASYYIERSTTLYIDSFGSECLSVLRSLGL

XP_022991830.1 LOW QUALITY PROTEIN: pre-rRNA-processing protein TSR1 homolog [Cucurbita maxima]

5.3e-85

100

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Query:  MGGNRAQVNKPHKSRFSSKATRQQHKTSLTDRGKVTKNNVAKGARAARLQRSKMIREQKRAAVLQEKRALSGSKSPPRVIVLLGLSASVDLNPLAEDLSS
        MGGNRAQVNKPHKSRFSSKATRQQHKTSLTDRGKVTKNNVAKGARAARLQRSKMIREQKRAAVLQEKRALSGSKSPPRVIVLLGLSASVDLNPLAEDLSS
Subjt:  MGGNRAQVNKPHKSRFSSKATRQQHKTSLTDRGKVTKNNVAKGARAARLQRSKMIREQKRAAVLQEKRALSGSKSPPRVIVLLGLSASVDLNPLAEDLSS

Query:  LLTPGASSSTVASSEYKLRATVLKAPYSDLHSCIEMAKVADLIAFVVSASYYIERSTTLYIDSFGSECLSVLRSLGLRE
        LLTPGASSSTVASSEYKLRATVLKAPYSDLHSCIEMAKVADLIAFVVSASYYIERSTTLYIDSFGSECLSVLRSLGLRE
Subjt:  LLTPGASSSTVASSEYKLRATVLKAPYSDLHSCIEMAKVADLIAFVVSASYYIERSTTLYIDSFGSECLSVLRSLGLRE

XP_023547507.1 pre-rRNA-processing protein TSR1 homolog [Cucurbita pepo subsp. pepo]

6.3e-78

94.35

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Query:  MGGNRAQVNKPHKSRFSSKATRQQHKTSLTDRGKVTKNNVAKGARAARLQRSKMIREQKRAAVLQEKRALSGSKSPPRVIVLLGLSASVDLNPLAEDLSS
        MGGNRAQVNKPHKSRFSSKATRQQHKTSLTDR KVTKNNVAKGARAARLQRSKMIREQKRAAVLQ+KRALSGSKSPPRVIVLLGLSASVDLNPLAEDL S
Subjt:  MGGNRAQVNKPHKSRFSSKATRQQHKTSLTDRGKVTKNNVAKGARAARLQRSKMIREQKRAAVLQEKRALSGSKSPPRVIVLLGLSASVDLNPLAEDLSS

Query:  LLTPGASSSTVASSEYKLRATVLKAPYSDLHSCIEMAKVADLIAFVVSASYYIERSTTLYIDSFGSECLSVLRSLGL
        LL+PGASSSTVASSEYKLRATVLKAPY DL SC+EMAKVADLIAFVVSASYYIE ST+LYI+SFGSECLSVLRSLGL
Subjt:  LLTPGASSSTVASSEYKLRATVLKAPYSDLHSCIEMAKVADLIAFVVSASYYIERSTTLYIDSFGSECLSVLRSLGL

XP_038875506.1 pre-rRNA-processing protein TSR1 homolog [Benincasa hispida]

8.2e-78

94.35

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Query:  MGGNRAQVNKPHKSRFSSKATRQQHKTSLTDRGKVTKNNVAKGARAARLQRSKMIREQKRAAVLQEKRALSGSKSPPRVIVLLGLSASVDLNPLAEDLSS
        MGGNRAQVNKPHKSRFSSKATRQQHKTSL DR KVTKNNVAKGARAARLQRSKMIREQKRAAVLQ+KRALSGSKSPPRVIVL GLSASVDLNPLAEDL S
Subjt:  MGGNRAQVNKPHKSRFSSKATRQQHKTSLTDRGKVTKNNVAKGARAARLQRSKMIREQKRAAVLQEKRALSGSKSPPRVIVLLGLSASVDLNPLAEDLSS

Query:  LLTPGASSSTVASSEYKLRATVLKAPYSDLHSCIEMAKVADLIAFVVSASYYIERSTTLYIDSFGSECLSVLRSLGL
        LLTPGASSSTVASSEYKLRATVLKAPY DL SC+EMAKVADLIAFVVSASYYIE ST+LYIDSFGSECLSVLRSLGL
Subjt:  LLTPGASSSTVASSEYKLRATVLKAPYSDLHSCIEMAKVADLIAFVVSASYYIERSTTLYIDSFGSECLSVLRSLGL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KDA2 Uncharacterized protein

2.4e-75

91.53

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Query:  MGGNRAQVNKPHKSRFSSKATRQQHKTSLTDRGKVTKNNVAKGARAARLQRSKMIREQKRAAVLQEKRALSGSKSPPRVIVLLGLSASVDLNPLAEDLSS
        MGGNRAQVNKPHKSRFSSKATRQQHKTSL D+ KVTKNNVAKGARAARLQRSKMIREQKRAAVLQ+KR LSGSKSPPRVIVL  LSASVDLNPLAEDL S
Subjt:  MGGNRAQVNKPHKSRFSSKATRQQHKTSLTDRGKVTKNNVAKGARAARLQRSKMIREQKRAAVLQEKRALSGSKSPPRVIVLLGLSASVDLNPLAEDLSS

Query:  LLTPGASSSTVASSEYKLRATVLKAPYSDLHSCIEMAKVADLIAFVVSASYYIERSTTLYIDSFGSECLSVLRSLGL
        LL PGASSSTVASSEYKLRATVLKAPY DL SC+EMAKVADLIAFV SASYYIE ST+LYIDSFGSECLSVLRSLGL
Subjt:  LLTPGASSSTVASSEYKLRATVLKAPYSDLHSCIEMAKVADLIAFVVSASYYIERSTTLYIDSFGSECLSVLRSLGL

A0A1S3CBG5 pre-rRNA-processing protein TSR1 homolog

8.3e-76

92.09

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Query:  MGGNRAQVNKPHKSRFSSKATRQQHKTSLTDRGKVTKNNVAKGARAARLQRSKMIREQKRAAVLQEKRALSGSKSPPRVIVLLGLSASVDLNPLAEDLSS
        MGGNRAQVNKPHKSRFS+KATRQQHKTSL DR KVTKNNVAKGARAARLQRSKMIREQKRAAVLQ+KRALSGSKSPPRVIVL  LSASVDLNPLAEDL S
Subjt:  MGGNRAQVNKPHKSRFSSKATRQQHKTSLTDRGKVTKNNVAKGARAARLQRSKMIREQKRAAVLQEKRALSGSKSPPRVIVLLGLSASVDLNPLAEDLSS

Query:  LLTPGASSSTVASSEYKLRATVLKAPYSDLHSCIEMAKVADLIAFVVSASYYIERSTTLYIDSFGSECLSVLRSLGL
        LL PGASSSTVASSEYKLRATVLKAPY DL SC+EMAKVADLIAFV SASYYIE ST+LYIDSFGSECLSVLRSLGL
Subjt:  LLTPGASSSTVASSEYKLRATVLKAPYSDLHSCIEMAKVADLIAFVVSASYYIERSTTLYIDSFGSECLSVLRSLGL

A0A5A7T9F0 Pre-rRNA-processing protein TSR1-like protein

8.3e-76

92.09

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Query:  MGGNRAQVNKPHKSRFSSKATRQQHKTSLTDRGKVTKNNVAKGARAARLQRSKMIREQKRAAVLQEKRALSGSKSPPRVIVLLGLSASVDLNPLAEDLSS
        MGGNRAQVNKPHKSRFS+KATRQQHKTSL DR KVTKNNVAKGARAARLQRSKMIREQKRAAVLQ+KRALSGSKSPPRVIVL  LSASVDLNPLAEDL S
Subjt:  MGGNRAQVNKPHKSRFSSKATRQQHKTSLTDRGKVTKNNVAKGARAARLQRSKMIREQKRAAVLQEKRALSGSKSPPRVIVLLGLSASVDLNPLAEDLSS

Query:  LLTPGASSSTVASSEYKLRATVLKAPYSDLHSCIEMAKVADLIAFVVSASYYIERSTTLYIDSFGSECLSVLRSLGL
        LL PGASSSTVASSEYKLRATVLKAPY DL SC+EMAKVADLIAFV SASYYIE ST+LYIDSFGSECLSVLRSLGL
Subjt:  LLTPGASSSTVASSEYKLRATVLKAPYSDLHSCIEMAKVADLIAFVVSASYYIERSTTLYIDSFGSECLSVLRSLGL

A0A6J1GPU5 LOW QUALITY PROTEIN: pre-rRNA-processing protein TSR1 homolog

4.0e-78

94.92

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Query:  MGGNRAQVNKPHKSRFSSKATRQQHKTSLTDRGKVTKNNVAKGARAARLQRSKMIREQKRAAVLQEKRALSGSKSPPRVIVLLGLSASVDLNPLAEDLSS
        MGGNRAQVNKPHKSRFSSKATRQQHKTSLTDR KVTKNNVAKGARAARLQ S MIREQKRAAVLQ+KRALSGSKSPPRVIVLLGLSASVDLNPLAEDL S
Subjt:  MGGNRAQVNKPHKSRFSSKATRQQHKTSLTDRGKVTKNNVAKGARAARLQRSKMIREQKRAAVLQEKRALSGSKSPPRVIVLLGLSASVDLNPLAEDLSS

Query:  LLTPGASSSTVASSEYKLRATVLKAPYSDLHSCIEMAKVADLIAFVVSASYYIERSTTLYIDSFGSECLSVLRSLGL
        LLTPGASSSTVASSEYKLRATVLKAPYSDL SC EMAKVADLIAFVVSASYYIE ST+LYIDSFGSECLSVLRSLGL
Subjt:  LLTPGASSSTVASSEYKLRATVLKAPYSDLHSCIEMAKVADLIAFVVSASYYIERSTTLYIDSFGSECLSVLRSLGL

A0A6J1JU15 LOW QUALITY PROTEIN: pre-rRNA-processing protein TSR1 homolog

2.6e-85

100

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Query:  MGGNRAQVNKPHKSRFSSKATRQQHKTSLTDRGKVTKNNVAKGARAARLQRSKMIREQKRAAVLQEKRALSGSKSPPRVIVLLGLSASVDLNPLAEDLSS
        MGGNRAQVNKPHKSRFSSKATRQQHKTSLTDRGKVTKNNVAKGARAARLQRSKMIREQKRAAVLQEKRALSGSKSPPRVIVLLGLSASVDLNPLAEDLSS
Subjt:  MGGNRAQVNKPHKSRFSSKATRQQHKTSLTDRGKVTKNNVAKGARAARLQRSKMIREQKRAAVLQEKRALSGSKSPPRVIVLLGLSASVDLNPLAEDLSS

Query:  LLTPGASSSTVASSEYKLRATVLKAPYSDLHSCIEMAKVADLIAFVVSASYYIERSTTLYIDSFGSECLSVLRSLGLRE
        LLTPGASSSTVASSEYKLRATVLKAPYSDLHSCIEMAKVADLIAFVVSASYYIERSTTLYIDSFGSECLSVLRSLGLRE
Subjt:  LLTPGASSSTVASSEYKLRATVLKAPYSDLHSCIEMAKVADLIAFVVSASYYIERSTTLYIDSFGSECLSVLRSLGLRE

SwissProt top hits

e value

%identity

Alignment

Q5XGY1 Pre-rRNA-processing protein TSR1 homolog

3.7e-04

27.37

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Query:  GNRAQVNKPHKS-RFSSKATRQQHKTSLTDRGKVTKNNVAKGARAARLQRSKMIREQKRAAVLQEKRALSGSKSPPRVIVLLGLSASVDLNPLAEDLSSL
        G   Q NKPHKS R   +  + +          + K N     +  R  ++  IR Q++ AVL EKR+L     PP +++ + L A      + +DL SL
Subjt:  GNRAQVNKPHKS-RFSSKATRQQHKTSLTDRGKVTKNNVAKGARAARLQRSKMIREQKRAAVLQEKRALSGSKSPPRVIVLLGLSASVDLNPLAEDLSSL

Query:  LTPGASS-----------STVASSEYKLRATVLKAPYSDLHSCIEMAKVADLIAFVVSASYYIERSTTLYIDSFGSECLSVLRSLGLREY
        +                   +   + K R   ++A   DL S +++AKVAD + F++              DS+G  CLS L + GL  Y
Subjt:  LTPGASS-----------STVASSEYKLRATVLKAPYSDLHSCIEMAKVADLIAFVVSASYYIERSTTLYIDSFGSECLSVLRSLGLREY

Arabidopsis top hits

e value

%identity

Alignment

AT1G42440.1 FUNCTIONS IN: molecular_function unknown

7.0e-51

64.29

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Query:  MGGNRAQVNKPHKSRFSSKATRQQHKTSLTDRGKVTK--NNVAKGARAARLQRSKMIREQKRAAVLQEKRALSGSKSPPRVIVLLGLSASVDLNPLAEDL
        MG +R QVNK HK+RFSSK++R  H+T+L D G++ K  +N  KGA+AAR+QR KM+REQKRAAVL+EKRA  G  S PRVIVL  LSASV+LN L ED+
Subjt:  MGGNRAQVNKPHKSRFSSKATRQQHKTSLTDRGKVTK--NNVAKGARAARLQRSKMIREQKRAAVLQEKRALSGSKSPPRVIVLLGLSASVDLNPLAEDL

Query:  SSLLT---PGASSSTVASSEYKLRATVLKAPYSDLHSCIEMAKVADLIAFVVSASYYIERSTTLYIDSFGSECLSVLRSLGL
          LL+    G +SSTVASSEYKLRATVLKAP+ DL +C+EMAKVADL+AFV SAS   E +++ +IDSFGS+CLSV RS+GL
Subjt:  SSLLT---PGASSSTVASSEYKLRATVLKAPYSDLHSCIEMAKVADLIAFVVSASYYIERSTTLYIDSFGSECLSVLRSLGL

Sequences

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CDS sequence

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ATGGGAGGTAATAGGGCTCAAGTCAATAAGCCCCATAAATCACGCTTCTCATCCAAGGCAACGCGACAACAGCACAAAACCTCTTTAACAGATAGAGGCAAAGTAACAAA
GAATAATGTTGCTAAGGGAGCTCGGGCTGCTCGTCTTCAGCGTAGCAAGATGATTCGAGAGCAGAAAAGGGCGGCTGTTTTACAGGAGAAAAGAGCATTAAGTGGATCAA
AGAGTCCTCCCAGAGTCATAGTTCTTTTAGGACTCTCTGCATCAGTAGACCTGAATCCACTGGCTGAGGATCTCTCGTCTCTATTAACTCCTGGAGCTTCGTCATCCACA
GTTGCTTCTTCAGAATACAAGCTTCGGGCAACAGTACTGAAAGCACCCTATAGTGACTTGCATTCATGTATAGAGATGGCCAAGGTAGCTGACCTAATTGCTTTTGTGGT
CTCTGCGAGCTACTATATTGAAAGAAGCACAACTCTCTACATTGATTCATTTGGAAGCGAATGCCTTTCTGTATTAAGATCTCTGGGCTTACGTGAGTACGGCAGTGCTT
ATTCGAGACCTACCCCACTGATATAA

mRNA sequence

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CATAAACCCTGAACCCTCTCCTAGTCTATTTTTTCACGTTGTGTGCTCCTCTCCAGCAGTTAGTGTCGCCACCTTTCTCCGGTTCAGTGGCGCCACCGCCGCCGTTGTCT
TTCTTCCGCTTGTGCCGCTGCAGCCTCTCTCTGAGCGGCTTTGTACAGGTTTTCGACTTTCTTGTTCTTACTGTTTCCATGGGAGGTAATAGGGCTCAAGTCAATAAGCC
CCATAAATCACGCTTCTCATCCAAGGCAACGCGACAACAGCACAAAACCTCTTTAACAGATAGAGGCAAAGTAACAAAGAATAATGTTGCTAAGGGAGCTCGGGCTGCTC
GTCTTCAGCGTAGCAAGATGATTCGAGAGCAGAAAAGGGCGGCTGTTTTACAGGAGAAAAGAGCATTAAGTGGATCAAAGAGTCCTCCCAGAGTCATAGTTCTTTTAGGA
CTCTCTGCATCAGTAGACCTGAATCCACTGGCTGAGGATCTCTCGTCTCTATTAACTCCTGGAGCTTCGTCATCCACAGTTGCTTCTTCAGAATACAAGCTTCGGGCAAC
AGTACTGAAAGCACCCTATAGTGACTTGCATTCATGTATAGAGATGGCCAAGGTAGCTGACCTAATTGCTTTTGTGGTCTCTGCGAGCTACTATATTGAAAGAAGCACAA
CTCTCTACATTGATTCATTTGGAAGCGAATGCCTTTCTGTATTAAGATCTCTGGGCTTACGTGAGTACGGCAGTGCTTATTCGAGACCTACCCCACTGATATAA

Protein sequence

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MGGNRAQVNKPHKSRFSSKATRQQHKTSLTDRGKVTKNNVAKGARAARLQRSKMIREQKRAAVLQEKRALSGSKSPPRVIVLLGLSASVDLNPLAEDLSSLLTPGASSST
VASSEYKLRATVLKAPYSDLHSCIEMAKVADLIAFVVSASYYIERSTTLYIDSFGSECLSVLRSLGLREYGSAYSRPTPLI

CmaCh17G013630 (gene) of Cucurbita maxima (Rimu) v1.1 genome