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CmaCh18G001030 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh18G001030
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionDNA-directed RNA polymerases II, IV and V subunit 12
Genome locationCma_Chr18:492357..494471
RNA-Seq ExpressionCmaCh18G001030
SyntenyCmaCh18G001030
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0005665 - RNA polymerase II, core complex (cellular component)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005736 - RNA polymerase I complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR006591 - RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4
IPR029040 - RNA polymerase subunit RPABC4/transcription elongation factor Spt4
IPR039747 - DNA-directed RNA polymerases I, II, and III subunit RPABC4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6572995.1 DNA-directed RNA polymerases II, IV and V subunit 12, partial [Cucurbita argyrosperma subsp. sororia]8.1e-19100Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIV
        MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIV
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIV

TXG56999.1 hypothetical protein EZV62_018312 [Acer yangbiense]3.1e-1897.83Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIV
        MDPQPEPVSYICGDCGMENTLK GDVIQCRECGYRILYKKRTRRIV
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIV

XP_003534102.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Glycine max]4.0e-1897.83Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIV
        MDPQPEPVSYICGDCGMENTLK GDVIQCRECGYRILYKKRTRRIV
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIV

XP_012836463.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 12 [Erythranthe guttata]3.1e-1897.83Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIV
        MDPQPEPVSYICGDCG ENTLKQGDVIQCRECGYRILYKKRTRRIV
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIV

XP_015579873.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Ricinus communis]8.1e-19100Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIV
        MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIV
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIV

TrEMBL top hitse value%identityAlignment
A0A0A0LQM4 Uncharacterized protein3.9e-19100Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIV
        MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIV
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIV

A0A1S4E4H5 DNA-directed RNA polymerases II, IV and V subunit 123.9e-19100Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIV
        MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIV
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIV

A0A6J1C6Z8 DNA-directed RNA polymerases II, IV and V subunit 123.9e-19100Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIV
        MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIV
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIV

A0A6J1GTY0 DNA-directed RNA polymerases II, IV and V subunit 123.9e-19100Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIV
        MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIV
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIV

A0A6J1KJQ4 DNA-directed RNA polymerases II, IV and V subunit 123.9e-19100Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIV
        MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIV
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIV

SwissProt top hitse value%identityAlignment
P53803 DNA-directed RNA polymerases I, II, and III subunit RPABC43.8e-1161.36Show/hide
Query:  PQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIV
        P+ +P+ YICG+C  EN +K  D I+CRECGYRI+YKKRT+R+V
Subjt:  PQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIV

Q3ZBC0 DNA-directed RNA polymerases I, II, and III subunit RPABC43.8e-1161.36Show/hide
Query:  PQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIV
        P+ +P+ YICG+C  EN +K  D I+CRECGYRI+YKKRT+R+V
Subjt:  PQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIV

Q63871 DNA-directed RNA polymerases I, II, and III subunit RPABC43.8e-1161.36Show/hide
Query:  PQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIV
        P+ +P+ YICG+C  EN +K  D I+CRECGYRI+YKKRT+R+V
Subjt:  PQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIV

Q9C8M4 DNA-directed RNA polymerase subunit 12-like protein2.2e-1173.17Show/hide
Query:  DPQPEP-VSYICGDCGMENTLKQGDVIQCRECGYRILYKKR
        D QPE  V Y+CGDCG EN LK+GDV QCR+CG+RILYKKR
Subjt:  DPQPEP-VSYICGDCGMENTLKQGDVIQCRECGYRILYKKR

Q9FLM8 DNA-directed RNA polymerases II, IV and V subunit 122.9e-1986.96Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIV
        MDP PEPV+Y+CGDCG ENTLK GDVIQCRECGYRILYKKRTRR+V
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIV

Arabidopsis top hitse value%identityAlignment
AT1G53690.1 DNA directed RNA polymerase, 7 kDa subunit1.6e-1273.17Show/hide
Query:  DPQPEP-VSYICGDCGMENTLKQGDVIQCRECGYRILYKKR
        D QPE  V Y+CGDCG EN LK+GDV QCR+CG+RILYKKR
Subjt:  DPQPEP-VSYICGDCGMENTLKQGDVIQCRECGYRILYKKR

AT5G41010.1 DNA directed RNA polymerase, 7 kDa subunit2.0e-2086.96Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIV
        MDP PEPV+Y+CGDCG ENTLK GDVIQCRECGYRILYKKRTRR+V
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCTCAACCCGAACCAGTGAGCTACATATGTGGAGATTGTGGAATGGAGAACACTCTGAAGCAGGGTGATGTTATACAGTGCCGAGAGTGTGGTTATCGTATTCT
CTACAAGAAGCGCACCCGTCGCATTGTTCATATCATTGACTTTTTAGTAAAACAAAAATGGAACTCAACATTGCTTAAGGACTCTTCTCTGCAATGTAAACATGATTATA
GCGCTGGCAACATATTAATATAG
mRNA sequenceShow/hide mRNA sequence
GTCGACTTTTCCTCACAATCAATTATCGAGCGCTTCTTCTTCTTCCCGCCTCTGGAAGTTTTTTGAAGTTTGACTCATGGATCCTCAACCCGAACCAGTGAGCTACATAT
GTGGAGATTGTGGAATGGAGAACACTCTGAAGCAGGGTGATGTTATACAGTGCCGAGAGTGTGGTTATCGTATTCTCTACAAGAAGCGCACCCGTCGCATTGTTCATATC
ATTGACTTTTTAGTAAAACAAAAATGGAACTCAACATTGCTTAAGGACTCTTCTCTGCAATGTAAACATGATTATAGCGCTGGCAACATATTAATATAG
Protein sequenceShow/hide protein sequence
MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVHIIDFLVKQKWNSTLLKDSSLQCKHDYSAGNILI