CuGenDBv2

Gene ID	CmaCh18G001070
Organism	Cucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description	coiled-coil domain-containing protein 12-like
Genome location	Cma_Chr18:520336..525324
RNA-Seq Expression	CmaCh18G001070
Synteny	CmaCh18G001070
Gene Ontology terms	GO:0005684 - U2-type spliceosomal complex (cellular component) GO:0071014 - post-mRNA release spliceosomal complex (cellular component)
InterPro domains	IPR013169 - mRNA splicing factor Cwf18-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6572999.1 Coiled-coil domain-containing protein 12, partial [Cucurbita argyrosperma subsp. sororia]

8.4e-73

97.4

Show/hide

Query:  MATEEDSVEQVAAARQERLRALRTAQELLNAPDEKTSGGEDQENGTAADTEETNLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN
        MATEEDSVEQVAAARQERLRALR AQELLNAPDEKTSGGEDQENG AADTEE NLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN
Subjt:  MATEEDSVEQVAAARQERLRALRTAQELLNAPDEKTSGGEDQENGTAADTEETNLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTEG
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQN TEG
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTEG

XP_022155130.1 coiled-coil domain-containing protein 12 isoform X1 [Momordica charantia]

2.8e-68

91.56

Show/hide

Query:  MATEEDSVEQVAAARQERLRALRTAQELLNAPDEKTSGGEDQENGTAADTEETNLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN
        MATEEDSVEQVAAAR+ERLRALR AQELLN PDEKTSGGED++NG   DTEETNL MKFRNYVPHDKELQEGKLAPPVLPKFEDPVA EPPQLKEDPFVN
Subjt:  MATEEDSVEQVAAARQERLRALRTAQELLNAPDEKTSGGEDQENGTAADTEETNLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTEG
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM+EQEKQK+SAEGDD QNGTEG
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTEG

XP_022955111.1 coiled-coil domain-containing protein 12-like [Cucurbita moschata]

8.4e-73

97.4

Show/hide

Query:  MATEEDSVEQVAAARQERLRALRTAQELLNAPDEKTSGGEDQENGTAADTEETNLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN
        MATEEDSVEQVAAARQERLRALR AQELLNAPDEKTSGGEDQENG AADTEE NLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN
Subjt:  MATEEDSVEQVAAARQERLRALRTAQELLNAPDEKTSGGEDQENGTAADTEETNLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTEG
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQN TEG
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTEG

XP_022994277.1 coiled-coil domain-containing protein 12-like isoform X1 [Cucurbita maxima]

1.8e-75

100

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Query:  MATEEDSVEQVAAARQERLRALRTAQELLNAPDEKTSGGEDQENGTAADTEETNLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN
        MATEEDSVEQVAAARQERLRALRTAQELLNAPDEKTSGGEDQENGTAADTEETNLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN
Subjt:  MATEEDSVEQVAAARQERLRALRTAQELLNAPDEKTSGGEDQENGTAADTEETNLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTEG
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTEG
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTEG

XP_023542240.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo]

4.9e-73

97.4

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Query:  MATEEDSVEQVAAARQERLRALRTAQELLNAPDEKTSGGEDQENGTAADTEETNLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN
        MATEEDSVEQVAAARQERLRALR AQELLNAPDEKTSGGED+ENG AADTEETNLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN
Subjt:  MATEEDSVEQVAAARQERLRALRTAQELLNAPDEKTSGGEDQENGTAADTEETNLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTEG
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQN TEG
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTEG

TrEMBL top hits

e value

%identity

Alignment

A0A1S3ATB1 coiled-coil domain-containing protein 12

4.8e-66

89.54

Show/hide

Query:  MATEEDSVEQVAAARQERLRALRTAQELLNAPDEKTSGGEDQENGTAADTEETNLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN
        MATEEDS EQVAAAR+ERL+ALR AQELLNA DEK S GED+ENG  ADT+ETNL MKFRNYVPHDKELQEGKLAPPVLPKFEDPV TEPPQ KEDPFVN
Subjt:  MATEEDSVEQVAAARQERLRALRTAQELLNAPDEKTSGGEDQENGTAADTEETNLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTE
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQ+AEGDDDQNG E
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTE

A0A5D3BJ95 Coiled-coil domain-containing protein 12

4.8e-66

89.54

Show/hide

Query:  MATEEDSVEQVAAARQERLRALRTAQELLNAPDEKTSGGEDQENGTAADTEETNLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN
        MATEEDS EQVAAAR+ERL+ALR AQELLNA DEK S GED+ENG  ADT+ETNL MKFRNYVPHDKELQEGKLAPPVLPKFEDPV TEPPQ KEDPFVN
Subjt:  MATEEDSVEQVAAARQERLRALRTAQELLNAPDEKTSGGEDQENGTAADTEETNLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTE
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQ+AEGDDDQNG E
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTE

A0A6J1DLK0 coiled-coil domain-containing protein 12 isoform X1

1.4e-68

91.56

Show/hide

Query:  MATEEDSVEQVAAARQERLRALRTAQELLNAPDEKTSGGEDQENGTAADTEETNLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN
        MATEEDSVEQVAAAR+ERLRALR AQELLN PDEKTSGGED++NG   DTEETNL MKFRNYVPHDKELQEGKLAPPVLPKFEDPVA EPPQLKEDPFVN
Subjt:  MATEEDSVEQVAAARQERLRALRTAQELLNAPDEKTSGGEDQENGTAADTEETNLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTEG
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM+EQEKQK+SAEGDD QNGTEG
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTEG

A0A6J1GST8 coiled-coil domain-containing protein 12-like

4.1e-73

97.4

Show/hide

Query:  MATEEDSVEQVAAARQERLRALRTAQELLNAPDEKTSGGEDQENGTAADTEETNLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN
        MATEEDSVEQVAAARQERLRALR AQELLNAPDEKTSGGEDQENG AADTEE NLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN
Subjt:  MATEEDSVEQVAAARQERLRALRTAQELLNAPDEKTSGGEDQENGTAADTEETNLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTEG
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQN TEG
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTEG

A0A6J1JYP1 coiled-coil domain-containing protein 12-like isoform X1

8.7e-76

100

Show/hide

Query:  MATEEDSVEQVAAARQERLRALRTAQELLNAPDEKTSGGEDQENGTAADTEETNLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN
        MATEEDSVEQVAAARQERLRALRTAQELLNAPDEKTSGGEDQENGTAADTEETNLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN
Subjt:  MATEEDSVEQVAAARQERLRALRTAQELLNAPDEKTSGGEDQENGTAADTEETNLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTEG
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTEG
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTEG

SwissProt top hits

e value

%identity

Alignment

Q8R344 Coiled-coil domain-containing protein 12

2.9e-12

37.5

Show/hide

Query:  VEQVAAARQERLRALRTAQELLNAPDEKTSGGEDQENGTAADTEET--NLGMKFRNYVPHDKELQEGKL--APPVL----PKFEDPVATEPPQLKEDPFV
        +E+ A  R+ERL+ALR      +  D     GE Q      + EE   + G++ RNYVP D++L+  ++  A PV      K +   A   P ++E    
Subjt:  VEQVAAARQERLRALRTAQELLNAPDEKTSGGEDQENGTAADTEET--NLGMKFRNYVPHDKELQEGKL--APPVL----PKFEDPVATEPPQLKEDPFV

Query:  NIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSA
        N+AP+KP+WDL+RDV KKL+KLE+RTQ+A+ +L+ E+ K ++ +
Subjt:  NIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSA

Q8WUD4 Coiled-coil domain-containing protein 12

3.3e-11

Show/hide

Query:  VEQVAAARQERLRALRTAQELLNAPDEKTSGGEDQENG---TAADTEETNLG-----MKFRNYVPHDKELQEGKL--APPVL----PKFEDPVATEPPQL
        +E+ A  R+ERL+ALR          EKT G +D+E+G   T    EE   G     ++ RNYVP D++L++ ++  A PV      K +   A   P +
Subjt:  VEQVAAARQERLRALRTAQELLNAPDEKTSGGEDQENG---TAADTEETNLG-----MKFRNYVPHDKELQEGKL--APPVL----PKFEDPVATEPPQL

Query:  KEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSA
        +E    N+AP+KP+WDL+RDV KKL+KL++RTQ+A+ +L+ E+ K ++ +
Subjt:  KEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSA

Arabidopsis top hits

e value

%identity

Alignment

AT3G05070.1 CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf18 (InterPro:IPR013169); Has 292 Blast hits to 292 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi - 83; Plants - 38; Viruses - 11; Other Eukaryotes - 42 (source: NCBI BLink).

4.3e-43

65.54

Show/hide

Query:  MATEEDSVEQVAAARQERLRALRTAQELLNAPDEKTSGGEDQENGTAADTEETNLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPP--QLKEDPF
        MA+E++S+EQ AAAR+E L+ALR AQEL           E +E+G     EE    MKFRNYVP  KELQ+GKLAPP LPKFEDP+   PP  + KEDPF
Subjt:  MATEEDSVEQVAAARQERLRALRTAQELLNAPDEKTSGGEDQENGTAADTEETNLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPP--QLKEDPF

Query:  VNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGD
        VNIAPKKPNWDLRRDVQKKLDKLERRTQKA++KLMEEQEK+++ AE D
Subjt:  VNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGD

Sequences

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CDS sequence

Show/hide CDS sequence

mRNA sequence

Show/hide mRNA sequence

ATGGCAACTGAAGAAGACTCCGTCGAACAAGTTGCTGCAGCACGTCAAGAGAGATTGAGAGCTCTAAGAACTGCTCAGGAATTGTTAAACGCTCCAGATGAGAAAACTTC
TGGAGGAGAGGATCAAGAGAATGGCACTGCCGCAGATACCGAAGAAACTAATCTTGGTATGAAATTTCGGAACTATGTTCCTCATGACAAGGAGCTCCAAGAGGGTAAGC
TTGCCCCGCCTGTATTGCCTAAGTTTGAGGACCCTGTTGCTACTGAACCTCCACAATTAAAAGAGGACCCATTTGTGAATATTGCTCCAAAAAAACCAAACTGGGACCTC
AGAAGGGACGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGTACTCAGAAAGCATTATATAAGCTTATGGAGGAACAGGAAAAGCAGAAGCAGTCAGCTGAAGGAGATGA
TGACCAAAATGGTACAGAGGGATAGTATGCCACACGAGTCTTGAGCTCTCAAATGTTACAGTCCGATATGCTATGAAAAGTATATCATTGAAGAAAACTGGGCGTTACTT
GGCTCATAGGTTAGACGTTTGCAAACGTTTCACGGTTCGTTGCATATGTTGTGTTGGGGCAGCAACCAATTTCCAGATGACTTCAGATGGAAATACAAGGAAGCTGGAAT
TCATCTGGCTTCAGGGCAAGGGCAAAATCGGGCAACGTTGGTGCAGTTTCAACGATTCTGTAATTGGTTAATTGGTTAATTTACAATGCAAAATGATGGCTTG

Protein sequence

Show/hide protein sequence

MATEEDSVEQVAAARQERLRALRTAQELLNAPDEKTSGGEDQENGTAADTEETNLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDL
RRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTEG

CmaCh18G001070 (gene) of Cucurbita maxima (Rimu) v1.1 genome