; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmaCh18G011920 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh18G011920
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionPentatricopeptide repeat (PPR-like) superfamily protein
Genome locationCma_Chr18:9458418..9460272
RNA-Seq ExpressionCmaCh18G011920
SyntenyCmaCh18G011920
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GER32279.1 pentatricopeptide repeat (PPR-like) superfamily protein [Striga asiatica]1.7e-1063.93Show/hide
Query:  SQRIQYCVVVRLGISWVTEFRHGGRPPLALRKFPYRVFNLTC--DPSLMGSHSTEESSRRG
        S   Q+ V VR G SWVTEF HGG PPLALR +PY VF+LT    PSL GSHSTE S R G
Subjt:  SQRIQYCVVVRLGISWVTEFRHGGRPPLALRKFPYRVFNLTC--DPSLMGSHSTEESSRRG
TrEMBL top hitse value%identityAlignment
A0A5A7PHP8 Pentatricopeptide repeat (PPR-like) superfamily protein8.3e-1163.93Show/hide
Query:  SQRIQYCVVVRLGISWVTEFRHGGRPPLALRKFPYRVFNLTC--DPSLMGSHSTEESSRRG
        S   Q+ V VR G SWVTEF HGG PPLALR +PY VF+LT    PSL GSHSTE S R G
Subjt:  SQRIQYCVVVRLGISWVTEFRHGGRPPLALRKFPYRVFNLTC--DPSLMGSHSTEESSRRG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCCAGAGGATCCAATACTGTGTAGTGGTTCGACTCGGAATATCATGGGTGACCGAGTTTCGCCACGGCGGTAGACCCCCATTGGCTCTCAGAAAGTTCCCATATCG
GGTTTTCAACTTGACCTGTGACCCTTCTCTAATGGGTTCCCATTCGACGGAGGAATCGAGTCGTCGGGGAAGGCTTTTGAGACGGATGATAGAATCAGAGGTTGCGCCGG
ATGTAAGCTCGACTGACCAGCGAGCTGTATTGGAGGATCCGCCACGGTCTTGGTTGACAGACTCCTCATCGTCGTTGGCGACAAGGTACTTGTCGTGGTGGCTACGGAGA
CGGACGGTCTTGGCTTTGCCGAAGAAATCCATTGAAGATCGGAGATTTGAGCTGAAGAAGAAACAGAGGAAGTCTTCAAATTTTGGGAAACTTCTAAGTAAACGCAGGAG
GATAAGAACAGAACGCGGGCGTTTCATTGTCAAAACTGGTAAAACAAAGTCAGCTAGCGATACAACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCCCAGAGGATCCAATACTGTGTAGTGGTTCGACTCGGAATATCATGGGTGACCGAGTTTCGCCACGGCGGTAGACCCCCATTGGCTCTCAGAAAGTTCCCATATCG
GGTTTTCAACTTGACCTGTGACCCTTCTCTAATGGGTTCCCATTCGACGGAGGAATCGAGTCGTCGGGGAAGGCTTTTGAGACGGATGATAGAATCAGAGGTTGCGCCGG
ATGTAAGCTCGACTGACCAGCGAGCTGTATTGGAGGATCCGCCACGGTCTTGGTTGACAGACTCCTCATCGTCGTTGGCGACAAGGTACTTGTCGTGGTGGCTACGGAGA
CGGACGGTCTTGGCTTTGCCGAAGAAATCCATTGAAGATCGGAGATTTGAGCTGAAGAAGAAACAGAGGAAGTCTTCAAATTTTGGGAAACTTCTAAGTAAACGCAGGAG
GATAAGAACAGAACGCGGGCGTTTCATTGTCAAAACTGGTAAAACAAAGTCAGCTAGCGATACAACTTGAAACGACGCGGTTTTAACGTTGAATATTCGGCGACTCTGTC
TCGGTCAACATTCGCTCCGCCGTCCGGCGTTACTCAGGCCGCTTCTCCGATACGGATCGGCGCGCAGATTGGGCGTCGCCGGGGAACTTCTTGCGGAGGCAGAAAACTCA
TCGGAATCCGCCGAAGAGAGGGCGGAATTCGTCGTGGACCACGGCGGAGTAACGCGGTTAGCCCTCAAATAAGTGCCGCACTAACTCACCAATGTCACCTGATCGCCGTC
GCGTACAGGCGGCAAGTTTTTCATGCCTCGTTTGCAGCGCCTTCTTCCCCGTCGCACCGAGTAGAAAATTAAACGCCGTGGCAGAGACGTACCGGCCATGGCGGCTCCGA
AGGCGAGGGTACGTAATAAAATTAAAAATTTTTGTCAAGCATAAAATTGAATTATATTTTATTATTATTATTAGTATGTTTGTGGCTGAGGGTACATGCGTAATATCCAA
ATATCATCTAATGATTGCTTTAGCCAATAAATATAATTACATAATAATATGGG
Protein sequenceShow/hide protein sequence
MSQRIQYCVVVRLGISWVTEFRHGGRPPLALRKFPYRVFNLTCDPSLMGSHSTEESSRRGRLLRRMIESEVAPDVSSTDQRAVLEDPPRSWLTDSSSSLATRYLSWWLRR
RTVLALPKKSIEDRRFELKKKQRKSSNFGKLLSKRRRIRTERGRFIVKTGKTKSASDTT