; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmaCh19G003530 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh19G003530
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Descriptionpolygalacturonase-like
Genome locationCma_Chr19:3742532..3743330
RNA-Seq ExpressionCmaCh19G003530
SyntenyCmaCh19G003530
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0015698 - inorganic anion transport (biological process)
GO:0098656 - anion transmembrane transport (biological process)
GO:0005741 - mitochondrial outer membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0004650 - polygalacturonase activity (molecular function)
GO:0008308 - voltage-gated anion channel activity (molecular function)
InterPro domainsIPR000743 - Glycoside hydrolase, family 28
IPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022932973.1 polygalacturonase-like [Cucurbita moschata]5.3e-5488Show/hide
Query:  MEAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCS
        MEAEE+GVHNVTVKSSTFT T+NGVRIKSWGRPSNG AT V+FQHIIMDNVKNPIIIDQNYCPHLKDCPGQ S VKVSEVTY+DIKGTSATEIAI  DCS
Subjt:  MEAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCS

Query:  PTNHCTRLSLIDIKLTYENHITKAS
        PTNHCT LSL DI LTYENHI KAS
Subjt:  PTNHCTRLSLIDIKLTYENHITKAS

XP_022963687.1 polygalacturonase-like [Cucurbita moschata]3.0e-5790.4Show/hide
Query:  MEAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCS
        +EAEEDGVHNVTVKSSTFT T+NGVRIKSWGRPSNGFATNVHFQHI MDNVKNPIIIDQNYCPHLKDCPGQDS VKVSEVTY+DIKGTSATEIAI  DCS
Subjt:  MEAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCS

Query:  PTNHCTRLSLIDIKLTYENHITKAS
        PTNHCT L+LIDI LTYENHI KAS
Subjt:  PTNHCTRLSLIDIKLTYENHITKAS

XP_022974795.1 polygalacturonase-like [Cucurbita maxima]2.1e-5891.2Show/hide
Query:  MEAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCS
        M+AEEDGVHN+TVKSSTFTRTRNG RIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPGQDS VKVSEVTY+DIKGTSAT+IAI  DCS
Subjt:  MEAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCS

Query:  PTNHCTRLSLIDIKLTYENHITKAS
        PTNHCT L LIDIKLTYENHI KAS
Subjt:  PTNHCTRLSLIDIKLTYENHITKAS

XP_023521278.1 polygalacturonase-like [Cucurbita pepo subsp. pepo]1.2e-5083.2Show/hide
Query:  MEAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCS
        +E EEDGVHN+TVKSSTFT T+NGVRIKSWGRPSNGFATNV+FQHIIMDNVKNPIIIDQNYCP  K+CP     +KVSEVTY+DIKGTSATEIAI  DCS
Subjt:  MEAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCS

Query:  PTNHCTRLSLIDIKLTYENHITKAS
        PTNHCT LSLIDI LTYENHI KAS
Subjt:  PTNHCTRLSLIDIKLTYENHITKAS

XP_023522679.1 polygalacturonase-like [Cucurbita pepo subsp. pepo]2.0e-5387.2Show/hide
Query:  MEAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCS
        ME EEDGVHNVTVKSS FT T+NGVRIKSWGRPSNG AT V+FQHIIMDNVKNPIIIDQNYCPHLKDCPGQ S VKVSEVTY+DIKGTSATEIAI  DCS
Subjt:  MEAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCS

Query:  PTNHCTRLSLIDIKLTYENHITKAS
        PTNHCT LSL DI LTYENHI KAS
Subjt:  PTNHCTRLSLIDIKLTYENHITKAS

TrEMBL top hitse value%identityAlignment
A0A6J1F3B8 polygalacturonase-like2.6e-5488Show/hide
Query:  MEAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCS
        MEAEE+GVHNVTVKSSTFT T+NGVRIKSWGRPSNG AT V+FQHIIMDNVKNPIIIDQNYCPHLKDCPGQ S VKVSEVTY+DIKGTSATEIAI  DCS
Subjt:  MEAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCS

Query:  PTNHCTRLSLIDIKLTYENHITKAS
        PTNHCT LSL DI LTYENHI KAS
Subjt:  PTNHCTRLSLIDIKLTYENHITKAS

A0A6J1HFX3 polygalacturonase-like1.5e-5790.4Show/hide
Query:  MEAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCS
        +EAEEDGVHNVTVKSSTFT T+NGVRIKSWGRPSNGFATNVHFQHI MDNVKNPIIIDQNYCPHLKDCPGQDS VKVSEVTY+DIKGTSATEIAI  DCS
Subjt:  MEAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCS

Query:  PTNHCTRLSLIDIKLTYENHITKAS
        PTNHCT L+LIDI LTYENHI KAS
Subjt:  PTNHCTRLSLIDIKLTYENHITKAS

A0A6J1I843 polygalacturonase-like5.0e-5081.6Show/hide
Query:  MEAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCS
        ++AEEDGVHNVT+  STFT T+NGVRIKSWGRPS GFAT V+FQHIIMDNVKNPIIIDQNYCPH  DCPGQ S VKVSEVTY+DIKGTSATEIAI  DCS
Subjt:  MEAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCS

Query:  PTNHCTRLSLIDIKLTYENHITKAS
        P NHCT LS+ DI LTYENHI KAS
Subjt:  PTNHCTRLSLIDIKLTYENHITKAS

A0A6J1IDZ8 polygalacturonase-like1.0e-5084.55Show/hide
Query:  AEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCSPT
        AEEDGVHNVTV SSTFT T+NGVRIKSWGRPSNGFAT VHFQ IIMDNVKNPIIID+NYCPH K+CPGQ S VKVS+VTY+DIKGTSATEIAI  DCSP 
Subjt:  AEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCSPT

Query:  NHCTRLSLIDIKLTYENHITKAS
        NHCTRLSL DIKLTYEN I +AS
Subjt:  NHCTRLSLIDIKLTYENHITKAS

A0A6J1IEV2 polygalacturonase-like1.0e-5891.2Show/hide
Query:  MEAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCS
        M+AEEDGVHN+TVKSSTFTRTRNG RIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPGQDS VKVSEVTY+DIKGTSAT+IAI  DCS
Subjt:  MEAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCS

Query:  PTNHCTRLSLIDIKLTYENHITKAS
        PTNHCT L LIDIKLTYENHI KAS
Subjt:  PTNHCTRLSLIDIKLTYENHITKAS

SwissProt top hitse value%identityAlignment
O22818 Probable polygalacturonase At2g438601.8e-2855.74Show/hide
Query:  EEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCSPTN
        EE GV NVTV +  F  T NGVRIK+WG+ SN FA N+ FQHI M  VKNPIIIDQ+YC H K CP Q+S VKVS V Y+DI GTS TE+A+  DCS   
Subjt:  EEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCSPTN

Query:  HCTRLSLIDIKLTYENHITKAS
         CT + + D+ L   +   +AS
Subjt:  HCTRLSLIDIKLTYENHITKAS

P24548 Exopolygalacturonase (Fragment)1.5e-1944.25Show/hide
Query:  EDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAID--CSPTNH
        E+ V  + VK+ T T ++NGVRIK+W +   G A+ +HFQ I M++V  PI+IDQ YCP+ +      S VK+S++++K+IKGTS T+ A+   CS +  
Subjt:  EDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAID--CSPTNH

Query:  CTRLSLIDIKLTY
        C  + L DI LTY
Subjt:  CTRLSLIDIKLTY

P48979 Polygalacturonase4.3e-3861.29Show/hide
Query:  EAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCSP
        E EE GV NVTVK+ TF+ T+NG+RIKSWGRPS GFA N+ FQH  M NV+NPI+IDQ+YCP  K CPGQ S V++S+VTY+DI GTSATE+A+  DCSP
Subjt:  EAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCSP

Query:  TNHCTRLSLIDIKLTYENHITKAS
         + C  + L D+KLTY+N   ++S
Subjt:  TNHCTRLSLIDIKLTYENHITKAS

P49063 Exopolygalacturonase clone GBGA4835.2e-2046.9Show/hide
Query:  EDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAID--CSPTNH
        E  V  VTV+      T NGVRIK+W     G A+N+ F+ I MDNV  P++IDQ YCP+     G  S+VK+S+VT K IKGTSAT++A+   CS    
Subjt:  EDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAID--CSPTNH

Query:  CTRLSLIDIKLTY
        CT ++L DI L +
Subjt:  CTRLSLIDIKLTY

Q9SFB7 Polygalacturonase QRT25.2e-2046.67Show/hide
Query:  VHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAID--CSPTNHCTR
        V NV V  +T   T NGVRIK+W +  +G A N+ FQ IIM NV NPIII+Q+YC  ++ CP Q S V+VS V YK+I+GTS+  IA+   CS    C  
Subjt:  VHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAID--CSPTNHCTR

Query:  LSLIDIKLT--YENHITKAS
        +S+ ++KL    +  ++KAS
Subjt:  LSLIDIKLT--YENHITKAS

Arabidopsis top hitse value%identityAlignment
AT1G05650.1 Pectin lyase-like superfamily protein2.0e-3562.07Show/hide
Query:  EAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAID--CSP
        +  EDGV NVTV SS FT ++NGVRIKSW RPS GF  NV FQ++IM NV+NPIIIDQNYCP  + CP + S VK+++VTYK+I+GTSAT+ A+   CS 
Subjt:  EAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAID--CSP

Query:  TNHCTRLSLIDIKLTY
        +N CT ++L DIKLTY
Subjt:  TNHCTRLSLIDIKLTY

AT1G05660.1 Pectin lyase-like superfamily protein2.7e-3562.07Show/hide
Query:  EAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAID--CSP
        E +EDGV NVTV SS FT ++NGVRIKSW RPSNGF   V FQ ++M NV+NPIIIDQNYCP  + CP + S VK+S+VTYK+I+GTSAT+ A+   CS 
Subjt:  EAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAID--CSP

Query:  TNHCTRLSLIDIKLTY
        ++ CT ++L DIKLTY
Subjt:  TNHCTRLSLIDIKLTY

AT2G43870.1 Pectin lyase-like superfamily protein9.1e-3661.02Show/hide
Query:  EAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCSP
        ++ E GV NVTVK+ TFT T NGVRIKSW RPS+GFA N+ FQH +M+NV+NPIIIDQNYCP   DCP Q S +K+S+V + DI GTSATE+ +  DCS 
Subjt:  EAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCSP

Query:  TNHCTRLSLIDIKLTYEN
           CT + L D+KLTY+N
Subjt:  TNHCTRLSLIDIKLTYEN

AT2G43880.1 Pectin lyase-like superfamily protein1.3e-3765.22Show/hide
Query:  AEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIA--IDCSPT
        A E+GV NVTV SS FT+T+NGVRIK+W RPS GF  NV F+++IM+NV+NP+IIDQNYCP+ K CP Q S VK+S VT+ +IKGTS T IA  +DCS +
Subjt:  AEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIA--IDCSPT

Query:  NHCTRLSLIDIKLTY
        NHCT L L DIKLTY
Subjt:  NHCTRLSLIDIKLTY

AT3G59850.1 Pectin lyase-like superfamily protein6.3e-3759.32Show/hide
Query:  EAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCSP
        E+ E GV N+TVK++TFT T NGVRIKSW RPSNGFA N+ FQH +M+NV+NPI+IDQNYCP  ++CP Q S +K+S+V + DI GTSATE+ +  DCS 
Subjt:  EAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCSP

Query:  TNHCTRLSLIDIKLTYEN
           CT + + D+KLTY N
Subjt:  TNHCTRLSLIDIKLTYEN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGCTGAGGAGGATGGAGTGCATAACGTTACAGTGAAATCATCTACATTCACAAGGACTCGGAATGGAGTAAGGATTAAGTCTTGGGGAAGACCAAGCAAT
GGATTCGCTACCAACGTTCATTTTCAACACATTATTATGGATAATGTGAAAAACCCAATCATAATTGATCAAAATTATTGTCCACATCTCAAAGACTGTCCTGGT
CAAGATTCTGAAGTTAAAGTTAGCGAAGTAACATACAAAGACATCAAGGGAACTTCAGCCACTGAAATAGCTATTGATTGTAGTCCAACAAATCATTGCACTAGA
TTAAGCTTGATAGACATAAAGCTAACTTACGAGAATCACATCACTAAAGCTTCA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGCTGAGGAGGATGGAGTGCATAACGTTACAGTGAAATCATCTACATTCACAAGGACTCGGAATGGAGTAAGGATTAAGTCTTGGGGAAGACCAAGCAAT
GGATTCGCTACCAACGTTCATTTTCAACACATTATTATGGATAATGTGAAAAACCCAATCATAATTGATCAAAATTATTGTCCACATCTCAAAGACTGTCCTGGT
CAAGATTCTGAAGTTAAAGTTAGCGAAGTAACATACAAAGACATCAAGGGAACTTCAGCCACTGAAATAGCTATTGATTGTAGTCCAACAAATCATTGCACTAGA
TTAAGCTTGATAGACATAAAGCTAACTTACGAGAATCACATCACTAAAGCTTCA
Protein sequenceShow/hide protein sequence
MEAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAIDCSPTNHCTR
LSLIDIKLTYENHITKAS