; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmaCh20G003780 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh20G003780
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionTropomyosin
Genome locationCma_Chr20:1835470..1838159
RNA-Seq ExpressionCmaCh20G003780
SyntenyCmaCh20G003780
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061866.1 tropomyosin [Cucumis melo var. makuwa]2.6e-3261.17Show/hide
Query:  QLAKEQNRAESLSAEALEL---LDKGT-------------------------------------------HEEDISREGSSTME-SSKICFCIPRHKNSH
        QLAKE++RAESLSAE LEL   L + T                                           +EEDISRE SSTME SSKICFCIPRHKN H
Subjt:  QLAKEQNRAESLSAEALEL---LDKGT-------------------------------------------HEEDISREGSSTME-SSKICFCIPRHKNSH

Query:  KVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSNGNGNGNTGDASAAGSAAAVAAIAVTAVTMDAVDDDDGGSTHVHGGEGGGGGGG
        K DGGSEKSSKSKPSRRKS  G+KEGKHSS SDS  +GNGN+GDA AA SA AVAA+AVTAVTMDA+ DDDGGSTHVHGGEGG GG G
Subjt:  KVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSNGNGNGNTGDASAAGSAAAVAAIAVTAVTMDAVDDDDGGSTHVHGGEGGGGGGG

KAG6570682.1 hypothetical protein SDJN03_29597, partial [Cucurbita argyrosperma subsp. sororia]3.2e-5980.42Show/hide
Query:  MVKALKDVAMEKDAAIVAQ------------RQLAKEQNRAESLSAEALE-----------------LLDKGTHEEDISREGSSTMESSKICFCIPRHKN
        M KALKDVAMEKDAA+VAQ            RQLAKEQNRAE+LSAEALE                 LLDKGTHEEDISREGSSTMESSKICFCIPRHKN
Subjt:  MVKALKDVAMEKDAAIVAQ------------RQLAKEQNRAESLSAEALE-----------------LLDKGTHEEDISREGSSTMESSKICFCIPRHKN

Query:  SHKVDGGSEKSSKSKPSRRKSGAKEGKHSSSSDSNGNGNGNTGDASAAGSAAAVAAIAVTAVTMDAVDDDDGGSTHVHGGEGGGGGGGD
        SHKVDGGSEKSSKSKPSRRKSGAKEGKHSSSSDS  +GNGNTG ASAAGSAAAVAAIAVTAVTMDAVD+DDGGSTHVHGGEGGGGGGGD
Subjt:  SHKVDGGSEKSSKSKPSRRKSGAKEGKHSSSSDSNGNGNGNTGDASAAGSAAAVAAIAVTAVTMDAVDDDDGGSTHVHGGEGGGGGGGD

KAG6605437.1 hypothetical protein SDJN03_02754, partial [Cucurbita argyrosperma subsp. sororia]2.2e-2855.5Show/hide
Query:  QLAKEQNRAESLSAEALEL----------------------------------------------LDKGTHEEDISREGSSTMESSKICFCIPRHKNSHK
        QLAKEQ+RAE LSAE LEL                                               + G +EE+ISRE SSTMESSKICFCIPRHKN  K
Subjt:  QLAKEQNRAESLSAEALEL----------------------------------------------LDKGTHEEDISREGSSTMESSKICFCIPRHKNSHK

Query:  VDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSNGNGNGNTGDASAAGSAAAVAAIAV-TAVTMDAVD--DDDGGSTHVHGGEGGGGGGGD
         DGGSEKSSKSKPSRRKS   AK GKHS SSDS  +G+GNTGDA+ + ++AAVAA+AV  A T+ AVD  +DDGGS+H HGGEGGGGGGGD
Subjt:  VDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSNGNGNGNTGDASAAGSAAAVAAIAV-TAVTMDAVD--DDDGGSTHVHGGEGGGGGGGD

KAG7010529.1 hypothetical protein SDJN02_27323, partial [Cucurbita argyrosperma subsp. argyrosperma]2.1e-6696.25Show/hide
Query:  MVKALKDVAMEKDAAIVAQRQLAKEQNRAESLSAEALELLDKGTHEEDISREGSSTMESSKICFCIPRHKNSHKVDGGSEKSSKSKPSRRKSGAKEGKHS
        M KALKDVAMEKDAA+VAQRQLAKEQNRAESLSAEALELLDKGTHEEDISREGSSTMESSKICFCIPRHKNSHKVDGGSEKSSKSKPSRRKSGAKEGKHS
Subjt:  MVKALKDVAMEKDAAIVAQRQLAKEQNRAESLSAEALELLDKGTHEEDISREGSSTMESSKICFCIPRHKNSHKVDGGSEKSSKSKPSRRKSGAKEGKHS

Query:  SSSDSNGNGNGNTGDASAAGSAAAVAAIAVTAVTMDAVDDDDGGSTHVHGGEGGGGGGGD
        SSSDS  +GNGNTGDASAAGSAAAVAAIAVTAVTMDAVD+DDGGSTHVHGGEGGGGGGGD
Subjt:  SSSDSNGNGNGNTGDASAAGSAAAVAAIAVTAVTMDAVDDDDGGSTHVHGGEGGGGGGGD

TYK15390.1 tropomyosin [Cucumis melo var. makuwa]2.6e-3261.17Show/hide
Query:  QLAKEQNRAESLSAEALEL---LDKGT-------------------------------------------HEEDISREGSSTME-SSKICFCIPRHKNSH
        QLAKE++RAESLSAE LEL   L + T                                           +EEDISRE SSTME SSKICFCIPRHKN H
Subjt:  QLAKEQNRAESLSAEALEL---LDKGT-------------------------------------------HEEDISREGSSTME-SSKICFCIPRHKNSH

Query:  KVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSNGNGNGNTGDASAAGSAAAVAAIAVTAVTMDAVDDDDGGSTHVHGGEGGGGGGG
        K DGGSEKSSKSKPSRRKS  G+KEGKHSS SDS  +GNGN+GDA AA SA AVAA+AVTAVTMDA+ DDDGGSTHVHGGEGG GG G
Subjt:  KVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSNGNGNGNTGDASAAGSAAAVAAIAVTAVTMDAVDDDDGGSTHVHGGEGGGGGGG

TrEMBL top hitse value%identityAlignment
A0A0A0KFD0 Uncharacterized protein1.5e-2578.85Show/hide
Query:  SSKICFCIPRHKNSHKVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSNGNGNGNTGDASAAGSAAAVAAIAVTAVTMDAVDDDDGGSTHVHGGEGGGG
        SSKICFCIPRHKN HK DGGSEKSSKSKPSRRKS   +KEGKHSSSSDS+GNGN        A SA AVAA+AVTAVTMDA+ DDDGGSTHVHGGEGG G
Subjt:  SSKICFCIPRHKNSHKVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSNGNGNGNTGDASAAGSAAAVAAIAVTAVTMDAVDDDDGGSTHVHGGEGGGG

Query:  GGGD
         GGD
Subjt:  GGGD

A0A5A7V5U9 Tropomyosin1.2e-3261.17Show/hide
Query:  QLAKEQNRAESLSAEALEL---LDKGT-------------------------------------------HEEDISREGSSTME-SSKICFCIPRHKNSH
        QLAKE++RAESLSAE LEL   L + T                                           +EEDISRE SSTME SSKICFCIPRHKN H
Subjt:  QLAKEQNRAESLSAEALEL---LDKGT-------------------------------------------HEEDISREGSSTME-SSKICFCIPRHKNSH

Query:  KVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSNGNGNGNTGDASAAGSAAAVAAIAVTAVTMDAVDDDDGGSTHVHGGEGGGGGGG
        K DGGSEKSSKSKPSRRKS  G+KEGKHSS SDS  +GNGN+GDA AA SA AVAA+AVTAVTMDA+ DDDGGSTHVHGGEGG GG G
Subjt:  KVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSNGNGNGNTGDASAAGSAAAVAAIAVTAVTMDAVDDDDGGSTHVHGGEGGGGGGG

A0A5D3CVK1 Tropomyosin1.2e-3261.17Show/hide
Query:  QLAKEQNRAESLSAEALEL---LDKGT-------------------------------------------HEEDISREGSSTME-SSKICFCIPRHKNSH
        QLAKE++RAESLSAE LEL   L + T                                           +EEDISRE SSTME SSKICFCIPRHKN H
Subjt:  QLAKEQNRAESLSAEALEL---LDKGT-------------------------------------------HEEDISREGSSTME-SSKICFCIPRHKNSH

Query:  KVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSNGNGNGNTGDASAAGSAAAVAAIAVTAVTMDAVDDDDGGSTHVHGGEGGGGGGG
        K DGGSEKSSKSKPSRRKS  G+KEGKHSS SDS  +GNGN+GDA AA SA AVAA+AVTAVTMDA+ DDDGGSTHVHGGEGG GG G
Subjt:  KVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSNGNGNGNTGDASAAGSAAAVAAIAVTAVTMDAVDDDDGGSTHVHGGEGGGGGGG

A0A6J1D515 circumsporozoite protein-like5.2e-2374.31Show/hide
Query:  MESSKICFCIPRHKNSHKVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSNGNGNGNTGDASAAGSAAAVAAIAV---TAVTMDAVDDDDGGSTHVHGG
        MES+KICFCIPRHKN HK +GGSEKSSKSKPSRRKS  G K GKHSSSSDS+G+GN NTG A+  GS AAVAA+ V   TA TMDAV +DDGGS H HGG
Subjt:  MESSKICFCIPRHKNSHKVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSNGNGNGNTGDASAAGSAAAVAAIAV---TAVTMDAVDDDDGGSTHVHGG

Query:  EGGGGGGGD
         GG GGGGD
Subjt:  EGGGGGGGD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTAAAGCTCTCAAGGATGTAGCCATGGAGAAAGATGCAGCAATTGTTGCCCAACGCCAACTTGCAAAAGAACAGAACAGAGCAGAATCGCTATCAGCAGAA
GCATTGGAGCTGTTGGATAAAGGAACTCATGAGGAAGACATAAGCAGGGAAGGAAGCTCAACAATGGAGTCCTCAAAGATCTGTTTCTGTATTCCTCGCCATAAG
AACAGCCACAAAGTTGATGGAGGATCGGAGAAATCTTCCAAATCAAAGCCTTCTCGCCGCAAATCTGGTGCCAAAGAAGGTAAGCATTCCTCTAGTAGTGATAGT
AATGGAAATGGAAACGGAAACACAGGTGATGCAAGTGCAGCAGGCAGCGCCGCCGCTGTGGCTGCCATTGCGGTCACGGCGGTGACCATGGATGCTGTTGATGAT
GATGATGGTGGCAGCACTCATGTCCACGGCGGTGAGGGAGGTGGCGGAGGCGGTGGAGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTAAAGCTCTCAAGGATGTAGCCATGGAGAAAGATGCAGCAATTGTTGCCCAACGCCAACTTGCAAAAGAACAGAACAGAGCAGAATCGCTATCAGCAGAA
GCATTGGAGCTGTTGGATAAAGGAACTCATGAGGAAGACATAAGCAGGGAAGGAAGCTCAACAATGGAGTCCTCAAAGATCTGTTTCTGTATTCCTCGCCATAAG
AACAGCCACAAAGTTGATGGAGGATCGGAGAAATCTTCCAAATCAAAGCCTTCTCGCCGCAAATCTGGTGCCAAAGAAGGTAAGCATTCCTCTAGTAGTGATAGT
AATGGAAATGGAAACGGAAACACAGGTGATGCAAGTGCAGCAGGCAGCGCCGCCGCTGTGGCTGCCATTGCGGTCACGGCGGTGACCATGGATGCTGTTGATGAT
GATGATGGTGGCAGCACTCATGTCCACGGCGGTGAGGGAGGTGGCGGAGGCGGTGGAGATTAGGGAATTGGAGGAGGATCGGAGTGTTTATTTATTATTGTTCTC
TGTTCTTGGTGATATCCTTCTGCTGGTTCCTTGCTGAGTTTTTATCCTTTGTTTGAATTACAGTATATGACCATCTGGGTCTTAGTTGCTTCTGTTATATATACA
TATACATATACATATACATATATATATATATATATATATATATAGA
Protein sequenceShow/hide protein sequence
MVKALKDVAMEKDAAIVAQRQLAKEQNRAESLSAEALELLDKGTHEEDISREGSSTMESSKICFCIPRHKNSHKVDGGSEKSSKSKPSRRKSGAKEGKHSSSSDS
NGNGNGNTGDASAAGSAAAVAAIAVTAVTMDAVDDDDGGSTHVHGGEGGGGGGGD