; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmaCh20G004480 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh20G004480
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionWUSCHEL-related homeobox 3
Genome locationCma_Chr20:2126538..2127144
RNA-Seq ExpressionCmaCh20G004480
SyntenyCmaCh20G004480
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0099402 - plant organ development (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001356 - Homeobox domain
IPR009057 - Homeobox-like domain superfamily
IPR044555 - Protein WUSCHEL-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570743.1 WUSCHEL-related homeobox 3, partial [Cucurbita argyrosperma subsp. sororia]6.4e-8292.49Show/hide
Query:  MSP-AAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQRFDDHHFFH
        MSP AAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQRFDDHHFFH
Subjt:  MSP-AAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQRFDDHHFFH

Query:  CFLQ----HHHQQRFLPPLLPLPTHFQGEGGEGRSTEVEGGGDDGMAVGEEDAETTCGNGTLRTLELFPVRGG
        CFLQ    HHH QRF PPLLPLPTHFQ   GEGR+TEVEGGGDDGMAVGEEDAETTC NGTLRTLELFPVR G
Subjt:  CFLQ----HHHQQRFLPPLLPLPTHFQGEGGEGRSTEVEGGGDDGMAVGEEDAETTCGNGTLRTLELFPVRGG

XP_004148244.1 WUSCHEL-related homeobox 3 [Cucumis sativus]9.5e-6275.98Show/hide
Query:  MSPAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQRFDD-----H
        MSP  ++ TPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLS YGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFF+KRQRFDD     H
Subjt:  MSPAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQRFDD-----H

Query:  HFFHCFLQHHHQQRFLPPLLPLPTHFQGE-GGEGRSTEVEG-------GGDDGMAVGEEDAETTCGNGTLRTLELFPVR
        HFF  FL HH  Q  L P LP P+  Q E G E  +TEVEG       GGD+G  V EED ETTCGNGTLRTLELFPVR
Subjt:  HFFHCFLQHHHQQRFLPPLLPLPTHFQGE-GGEGRSTEVEG-------GGDDGMAVGEEDAETTCGNGTLRTLELFPVR

XP_008463857.1 PREDICTED: WUSCHEL-related homeobox 3 [Cucumis melo]1.1e-6276.54Show/hide
Query:  MSPAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQRFDD----HH
        MSP  ++ TPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLS YGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFF+KRQRFDD    HH
Subjt:  MSPAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQRFDD----HH

Query:  FFHCFLQHHHQQRFLPPLLPLPTHFQGE-GGEGRSTEVEG-------GGDDGMAVGEEDAETTCGNGTLRTLELFPVRG
        FF  FL HH  Q  L P LP P+  Q E G E  +TEVEG       GGDDG  V EED ETTCGNG+LRTLELFPVRG
Subjt:  FFHCFLQHHHQQRFLPPLLPLPTHFQGE-GGEGRSTEVEG-------GGDDGMAVGEEDAETTCGNGTLRTLELFPVRG

XP_022944088.1 putative WUSCHEL-related homeobox 2 [Cucurbita moschata]1.9e-8696.47Show/hide
Query:  MSP--AAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQRFDDHHFF
        MSP  AAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQRFDDHHFF
Subjt:  MSP--AAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQRFDDHHFF

Query:  HCFLQHHHQQRFLPPLLPLPTHFQGEGGEGRSTEVEGGGDDGMAVGEEDAETTCGNGTLRTLELFPVRGG
        HCFLQHH  QRFLPPLLPLPTHFQGEGGEGR+TEVEGGGDDGMAVGEEDAETTCGNGTLRTLELFPVR G
Subjt:  HCFLQHHHQQRFLPPLLPLPTHFQGEGGEGRSTEVEGGGDDGMAVGEEDAETTCGNGTLRTLELFPVRGG

XP_023512022.1 WUSCHEL-related homeobox 3-like [Cucurbita pepo subsp. pepo]3.1e-6096.75Show/hide
Query:  MSPAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQRFDDHHFFHC
        MSP AAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQRFDDHH FHC
Subjt:  MSPAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQRFDDHHFFHC

Query:  FL-QHHHQQRFLPPLLPLPTHFQ
        FL  HHHQQRFLPPLLPLPTHFQ
Subjt:  FL-QHHHQQRFLPPLLPLPTHFQ

TrEMBL top hitse value%identityAlignment
A0A0A0KHT6 Homeobox domain-containing protein4.6e-6275.98Show/hide
Query:  MSPAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQRFDD-----H
        MSP  ++ TPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLS YGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFF+KRQRFDD     H
Subjt:  MSPAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQRFDD-----H

Query:  HFFHCFLQHHHQQRFLPPLLPLPTHFQGE-GGEGRSTEVEG-------GGDDGMAVGEEDAETTCGNGTLRTLELFPVR
        HFF  FL HH  Q  L P LP P+  Q E G E  +TEVEG       GGD+G  V EED ETTCGNGTLRTLELFPVR
Subjt:  HFFHCFLQHHHQQRFLPPLLPLPTHFQGE-GGEGRSTEVEG-------GGDDGMAVGEEDAETTCGNGTLRTLELFPVR

A0A1S3CK69 WUSCHEL-related homeobox 35.5e-6376.54Show/hide
Query:  MSPAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQRFDD----HH
        MSP  ++ TPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLS YGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFF+KRQRFDD    HH
Subjt:  MSPAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQRFDD----HH

Query:  FFHCFLQHHHQQRFLPPLLPLPTHFQGE-GGEGRSTEVEG-------GGDDGMAVGEEDAETTCGNGTLRTLELFPVRG
        FF  FL HH  Q  L P LP P+  Q E G E  +TEVEG       GGDDG  V EED ETTCGNG+LRTLELFPVRG
Subjt:  FFHCFLQHHHQQRFLPPLLPLPTHFQGE-GGEGRSTEVEG-------GGDDGMAVGEEDAETTCGNGTLRTLELFPVRG

A0A6J0ZWK0 WUSCHEL-related homeobox 3-like2.5e-3170.37Show/hide
Query:  MSPAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQ-------QHHFFIKRQRFD
        MSPAA+    SRWCPTPEQ+MILEE+YR+G++TPNA+QIQ ITSHLS YGKIEGKNVFYWFQNHKARDRQKLRRKL KQLQ       QHH    +Q   
Subjt:  MSPAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQ-------QHHFFIKRQRFD

Query:  DHHFFHCF
        +HHF H F
Subjt:  DHHFFHCF

A0A6J1FXP0 putative WUSCHEL-related homeobox 29.2e-8796.47Show/hide
Query:  MSP--AAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQRFDDHHFF
        MSP  AAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQRFDDHHFF
Subjt:  MSP--AAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQRFDDHHFF

Query:  HCFLQHHHQQRFLPPLLPLPTHFQGEGGEGRSTEVEGGGDDGMAVGEEDAETTCGNGTLRTLELFPVRGG
        HCFLQHH  QRFLPPLLPLPTHFQGEGGEGR+TEVEGGGDDGMAVGEEDAETTCGNGTLRTLELFPVR G
Subjt:  HCFLQHHHQQRFLPPLLPLPTHFQGEGGEGRSTEVEGGGDDGMAVGEEDAETTCGNGTLRTLELFPVRGG

B9T3K1 Homeobox domain-containing protein3.1e-3467.74Show/hide
Query:  MSPAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQ----HHFFIKRQRFDDHH
        MSPAA+    SRWCPTPEQ+MILEE+YRNG++TPNA+QIQ IT+HLSLYGKIEGKNVFYWFQNHKARDRQKLRRKL KQLQQ    +H     Q  DDHH
Subjt:  MSPAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQ----HHFFIKRQRFDDHH

Query:  FFHCFLQHHHQQRFLPPLLPLPTH
          H   Q HHQ       LP P H
Subjt:  FFHCFLQHHHQQRFLPPLLPLPTH

SwissProt top hitse value%identityAlignment
A2XZR3 Putative WUSCHEL-related homeobox 27.2e-2855.75Show/hide
Query:  AAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQRFDDHHFFHCFLQ
        AAA  + +RWCPTPEQ+M+LEE+YR GL+TPNA QIQ IT+HLS YG+IEGKNVFYWFQNHKARDRQKLRR+L                  HH   C   
Subjt:  AAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQRFDDHHFFHCFLQ

Query:  HHHQQRFLPPLLP
        +HH       ++P
Subjt:  HHHQQRFLPPLLP

A2ZH47 WUSCHEL-related homeobox 32.3e-2673.33Show/hide
Query:  TPS-RWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQ
        TPS RWCPTPEQ+MILEE+YR+G++TPNA +IQ IT+HL+ YG+IEGKNVFYWFQNHKAR+RQ+LRR+L  + QQ
Subjt:  TPS-RWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQ

Q33DK1 WUSCHEL-related homeobox 32.3e-2673.33Show/hide
Query:  TPS-RWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQ
        TPS RWCPTPEQ+MILEE+YR+G++TPNA +IQ IT+HL+ YG+IEGKNVFYWFQNHKAR+RQ+LRR+L  + QQ
Subjt:  TPS-RWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQ

Q5W7C3 Putative WUSCHEL-related homeobox 22.5e-2851.88Show/hide
Query:  AAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQRFDDHHFFHCFLQ
        AAA  + +RWCPTPEQ+M+LEE+YR GL+TPNA QIQ IT+HLS YG+IEGKNVFYWFQNHKARDRQKLRR+L                  HH   C   
Subjt:  AAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQRFDDHHFFHCFLQ

Query:  HHHQ----------QRFLPPLLPLPTHFQGEGG
        +HH            + LPPL P  +     GG
Subjt:  HHHQ----------QRFLPPLLPLPTHFQGEGG

Q9SIB4 WUSCHEL-related homeobox 31.4e-2855.91Show/hide
Query:  MSPAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQL--QQHHFFIKRQRFD-----
        MSP A+    +RWCPTPEQ+MILEE+YR+G++TPNA QIQ IT+HL+ YG+IEGKNVFYWFQNHKARDRQKLR+KL KQL  QQH   ++ Q+       
Subjt:  MSPAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQL--QQHHFFIKRQRFD-----

Query:  ------------DHH--FFHCFLQHHH
                    DHH  + H    HHH
Subjt:  ------------DHH--FFHCFLQHHH

Arabidopsis top hitse value%identityAlignment
AT1G46480.1 WUSCHEL related homeobox 43.0e-2168.75Show/hide
Query:  SRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRR
        +RW PT EQ+ ILE +Y+ G++TPNA QI+HIT  L  YGKIEGKNVFYWFQNHKAR+RQK +R
Subjt:  SRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRR

AT2G01500.1 Homeodomain-like superfamily protein1.5e-2065.22Show/hide
Query:  AATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRK
        AA   RW PTPEQ+  LEE+YR+G +TP   QIQ I S L  YG+IEGKNVFYWFQNHKAR+R K RR+
Subjt:  AATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRK

AT2G28610.1 Homeodomain-like superfamily protein1.0e-2955.91Show/hide
Query:  MSPAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQL--QQHHFFIKRQRFD-----
        MSP A+    +RWCPTPEQ+MILEE+YR+G++TPNA QIQ IT+HL+ YG+IEGKNVFYWFQNHKARDRQKLR+KL KQL  QQH   ++ Q+       
Subjt:  MSPAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQL--QQHHFFIKRQRFD-----

Query:  ------------DHH--FFHCFLQHHH
                    DHH  + H    HHH
Subjt:  ------------DHH--FFHCFLQHHH

AT3G18010.1 WUSCHEL related homeobox 16.0e-2268.18Show/hide
Query:  SRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKL
        SRW PTP+Q+ +LEE+YR G +TP+A  IQ IT+ L  YGKIEGKNVFYWFQNHKAR+RQK RR++
Subjt:  SRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKL

AT5G59340.1 WUSCHEL related homeobox 27.4e-2059.15Show/hide
Query:  AAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRK
        A  A+ SRW PT +Q+ +LE +Y+ G++TP+A QIQ IT  L  YG IEGKNVFYWFQNHKAR RQK +++
Subjt:  AAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCCGGCGGCGGCGGCGGCTACCCCATCACGGTGGTGTCCGACCCCCGAGCAAGTGATGATTTTGGAGGAGATTTATAGAAATGGGCTTAAGACTCCCAAT
GCCACTCAGATTCAGCATATTACTTCCCATCTTTCTTTGTATGGAAAGATTGAAGGCAAGAATGTGTTCTATTGGTTTCAAAACCACAAGGCTAGAGATCGCCAG
AAGCTGCGTAGGAAGCTTTATAAGCAGCTTCAGCAACATCATTTCTTCATTAAACGACAACGTTTTGATGACCATCATTTCTTTCACTGTTTTCTTCAGCACCAC
CACCAGCAGCGGTTCCTGCCGCCGCTACTCCCGCTTCCAACTCATTTTCAGGGGGAGGGTGGAGAGGGACGGTCGACGGAGGTGGAGGGCGGTGGCGATGATGGG
ATGGCGGTGGGGGAGGAGGATGCAGAGACGACATGTGGTAATGGGACGCTGAGGACGTTGGAGCTGTTTCCGGTGAGGGGGGGTGGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTCCGGCGGCGGCGGCGGCTACCCCATCACGGTGGTGTCCGACCCCCGAGCAAGTGATGATTTTGGAGGAGATTTATAGAAATGGGCTTAAGACTCCCAAT
GCCACTCAGATTCAGCATATTACTTCCCATCTTTCTTTGTATGGAAAGATTGAAGGCAAGAATGTGTTCTATTGGTTTCAAAACCACAAGGCTAGAGATCGCCAG
AAGCTGCGTAGGAAGCTTTATAAGCAGCTTCAGCAACATCATTTCTTCATTAAACGACAACGTTTTGATGACCATCATTTCTTTCACTGTTTTCTTCAGCACCAC
CACCAGCAGCGGTTCCTGCCGCCGCTACTCCCGCTTCCAACTCATTTTCAGGGGGAGGGTGGAGAGGGACGGTCGACGGAGGTGGAGGGCGGTGGCGATGATGGG
ATGGCGGTGGGGGAGGAGGATGCAGAGACGACATGTGGTAATGGGACGCTGAGGACGTTGGAGCTGTTTCCGGTGAGGGGGGGTGGGTGA
Protein sequenceShow/hide protein sequence
MSPAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQRFDDHHFFHCFLQHH
HQQRFLPPLLPLPTHFQGEGGEGRSTEVEGGGDDGMAVGEEDAETTCGNGTLRTLELFPVRGGG