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CmaCh20G005270 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh20G005270
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionDUF2146 domain-containing protein
Genome locationCma_Chr20:2533980..2534568
RNA-Seq ExpressionCmaCh20G005270
SyntenyCmaCh20G005270
Gene Ontology termsGO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570823.1 hypothetical protein SDJN03_29738, partial [Cucurbita argyrosperma subsp. sororia]1.3e-2294.44Show/hide
Query:  MNALMGTVSIGFEHECPHGHCFLLNPDHLKELGSSYAACNVADPLKFGKSGRHG
        MNALMGTVSIGFEHECPHGH FLLNPDHLKELGSSYAACNVADPLK+GK GRHG
Subjt:  MNALMGTVSIGFEHECPHGHCFLLNPDHLKELGSSYAACNVADPLKFGKSGRHG

KAG7010665.1 Protein SMG8, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-2294.44Show/hide
Query:  MNALMGTVSIGFEHECPHGHCFLLNPDHLKELGSSYAACNVADPLKFGKSGRHG
        MNALMGTVSIGFEHECPHGH FLLNPDHLKELGSSYAACNVADPLK+GK GRHG
Subjt:  MNALMGTVSIGFEHECPHGHCFLLNPDHLKELGSSYAACNVADPLKFGKSGRHG

XP_023513369.1 protein smg8-like isoform X1 [Cucurbita pepo subsp. pepo]3.7e-2292.59Show/hide
Query:  MNALMGTVSIGFEHECPHGHCFLLNPDHLKELGSSYAACNVADPLKFGKSGRHG
        MNALMGTVSIGFEHECPHGH FLLNPDHLKELGSSYAACNV DPLK+GK GRHG
Subjt:  MNALMGTVSIGFEHECPHGHCFLLNPDHLKELGSSYAACNVADPLKFGKSGRHG

XP_023513370.1 uncharacterized protein LOC111777873 isoform X2 [Cucurbita pepo subsp. pepo]3.7e-2292.59Show/hide
Query:  MNALMGTVSIGFEHECPHGHCFLLNPDHLKELGSSYAACNVADPLKFGKSGRHG
        MNALMGTVSIGFEHECPHGH FLLNPDHLKELGSSYAACNV DPLK+GK GRHG
Subjt:  MNALMGTVSIGFEHECPHGHCFLLNPDHLKELGSSYAACNVADPLKFGKSGRHG

XP_023513371.1 uncharacterized protein LOC111777873 isoform X3 [Cucurbita pepo subsp. pepo]3.7e-2292.59Show/hide
Query:  MNALMGTVSIGFEHECPHGHCFLLNPDHLKELGSSYAACNVADPLKFGKSGRHG
        MNALMGTVSIGFEHECPHGH FLLNPDHLKELGSSYAACNV DPLK+GK GRHG
Subjt:  MNALMGTVSIGFEHECPHGHCFLLNPDHLKELGSSYAACNVADPLKFGKSGRHG

TrEMBL top hitse value%identityAlignment
A0A0A0KGK1 Uncharacterized protein3.4e-1366.1Show/hide
Query:  VSIGFEHECPHGHCFLLNPDHLKELGSSY------------AACNVADPLKFGKSGRHG
        V IGFEHECPHGH FLLNPDHLKELGS +            AACN+ DPLK+GKS RHG
Subjt:  VSIGFEHECPHGHCFLLNPDHLKELGSSY------------AACNVADPLKFGKSGRHG

A0A1S3CNU9 uncharacterized protein LOC103503038 isoform X15.7e-1364.41Show/hide
Query:  VSIGFEHECPHGHCFLLNPDHLKELGSSYAA------------CNVADPLKFGKSGRHG
        V IGFEHECPHGH FLLNPDHLKELGSS+A             CN+ DPLK+GK+ RHG
Subjt:  VSIGFEHECPHGHCFLLNPDHLKELGSSYAA------------CNVADPLKFGKSGRHG

A0A1S4E583 uncharacterized protein LOC103503038 isoform X25.7e-1364.41Show/hide
Query:  VSIGFEHECPHGHCFLLNPDHLKELGSSYAA------------CNVADPLKFGKSGRHG
        V IGFEHECPHGH FLLNPDHLKELGSS+A             CN+ DPLK+GK+ RHG
Subjt:  VSIGFEHECPHGHCFLLNPDHLKELGSSYAA------------CNVADPLKFGKSGRHG

A0A5A7T1F3 DUF2146 domain-containing protein5.7e-1364.41Show/hide
Query:  VSIGFEHECPHGHCFLLNPDHLKELGSSYAA------------CNVADPLKFGKSGRHG
        V IGFEHECPHGH FLLNPDHLKELGSS+A             CN+ DPLK+GK+ RHG
Subjt:  VSIGFEHECPHGHCFLLNPDHLKELGSSYAA------------CNVADPLKFGKSGRHG

A0A6J1JZU3 uncharacterized protein LOC1114911862.4e-1161.02Show/hide
Query:  VSIGFEHECPHGHCFLLNPDHLKELGSSY------------AACNVADPLKFGKSGRHG
        + IGFEHECPHGH FLLNP+HLKELGSSY            AACN+A P ++GKS  HG
Subjt:  VSIGFEHECPHGHCFLLNPDHLKELGSSY------------AACNVADPLKFGKSGRHG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGCCCTCATGGGCACTGTTTCTATTGGCTTTGAGCATGAATGCCCTCATGGGCATTGTTTCCTACTGAATCCTGATCATCTTAAAGAGCTTGGATCGTCTTATGC
TGCATGCAATGTGGCTGATCCTCTCAAATTTGGTAAAAGTGGTCGTCATGGAGTTGGGCTTGCCCCCATTCTGTTCCTGGACGGCAGCAGAAACTGCAGTTCACATTTGG
ATGTCAAGTGGTGTTGCCTCCCGAGAGCTTCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATGCCCTCATGGGCACTGTTTCTATTGGCTTTGAGCATGAATGCCCTCATGGGCATTGTTTCCTACTGAATCCTGATCATCTTAAAGAGCTTGGATCGTCTTATGC
TGCATGCAATGTGGCTGATCCTCTCAAATTTGGTAAAAGTGGTCGTCATGGAGTTGGGCTTGCCCCCATTCTGTTCCTGGACGGCAGCAGAAACTGCAGTTCACATTTGG
ATGTCAAGTGGTGTTGCCTCCCGAGAGCTTCCTGA
Protein sequenceShow/hide protein sequence
MNALMGTVSIGFEHECPHGHCFLLNPDHLKELGSSYAACNVADPLKFGKSGRHGVGLAPILFLDGSRNCSSHLDVKWCCLPRAS