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CmaCh20G006200 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh20G006200
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Descriptionhigh mobility group B protein 3-like
Genome locationCma_Chr20:2891104..2894269
RNA-Seq ExpressionCmaCh20G006200
SyntenyCmaCh20G006200
Gene Ontology termsGO:0006333 - chromatin assembly or disassembly (biological process)
GO:0000785 - chromatin (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003682 - chromatin binding (molecular function)
GO:0030527 - structural constituent of chromatin (molecular function)
InterPro domainsIPR036910 - High mobility group box domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570882.1 High mobility group B protein 3, partial [Cucurbita argyrosperma subsp. sororia]2.2e-2044.05Show/hide
Query:  MLKQKKFEMKSTKSNKGMKKDQNAPKRPATVFFIFINAVR--------------------------------------ALKLKLKCQQ------------
        MLKQKK EMKSTK NKGMKKDQNAPKRPATVFFIF+   R                                       +++  + Q+            
Subjt:  MLKQKKFEMKSTKSNKGMKKDQNAPKRPATVFFIFINAVR--------------------------------------ALKLKLKCQQ------------

Query:  -NRRNQPLRSMMTHSRKLAPALRTPPSLGEGSNLKKLRRWTWLRKSNGFEEAMIKSSPKTREIIRRVW
         NRRN     + T+    +  L       EGSNL+ LRRWTWLRKSNGFEEA++KSSPK  EIIRRVW
Subjt:  -NRRNQPLRSMMTHSRKLAPALRTPPSLGEGSNLKKLRRWTWLRKSNGFEEAMIKSSPKTREIIRRVW

KAG6604859.1 High mobility group B protein 3, partial [Cucurbita argyrosperma subsp. sororia]6.6e-0936.36Show/hide
Query:  MLKQKKFEMKSTKSNKGMKKDQNAPKRPATVFFIFIN---------------------------------------------------------------
        MLK++K EMKSTKSNK MKKDQNAPKRPAT FFIF+                                                                
Subjt:  MLKQKKFEMKSTKSNKGMKKDQNAPKRPATVFFIFIN---------------------------------------------------------------

Query:  --------------------AVRALKLKLKCQQNRRNQPLRSMMTHSRKLAPAL
                            A+R LKLKLKCQQN RNQPL S+MT S+KLA AL
Subjt:  --------------------AVRALKLKLKCQQNRRNQPLRSMMTHSRKLAPAL

KAG7010730.1 hypothetical protein SDJN02_27526, partial [Cucurbita argyrosperma subsp. argyrosperma]1.2e-0756.92Show/hide
Query:  NRRNQPLRSMMTHSRKLAPALRTPPSLGEGSNLKKLRRWTWLRKSNGFEEAMIKSSPKTREIIRR
        NRRN     + T+    +  L       EGSNL+ LRRWTWLRKSNGFEEA++KSSPK  EIIRR
Subjt:  NRRNQPLRSMMTHSRKLAPALRTPPSLGEGSNLKKLRRWTWLRKSNGFEEAMIKSSPKTREIIRR

KAG7010731.1 High mobility group B protein 3, partial [Cucurbita argyrosperma subsp. argyrosperma]1.6e-0785Show/hide
Query:  MLKQKKFEMKSTKSNKGMKKDQNAPKRPATVFFIFINAVR
        MLKQKK EMKSTK NKGMKKDQNAPKRPATVFFIF+   R
Subjt:  MLKQKKFEMKSTKSNKGMKKDQNAPKRPATVFFIFINAVR

XP_022944518.1 high mobility group B protein 3-like [Cucurbita moschata]1.6e-0785Show/hide
Query:  MLKQKKFEMKSTKSNKGMKKDQNAPKRPATVFFIFINAVR
        MLKQKK EMKSTK NKGMKKDQNAPKRPATVFFIF+   R
Subjt:  MLKQKKFEMKSTKSNKGMKKDQNAPKRPATVFFIFINAVR

TrEMBL top hitse value%identityAlignment
A0A6J1CIL2 high mobility group B protein 3-like5.1e-0780Show/hide
Query:  MLKQKKFEMKSTKSNKGMKKDQNAPKRPATVFFIFINAVR
        MLKQ+K EMKSTKSNK MKKDQNAPKRPAT FFIF+   R
Subjt:  MLKQKKFEMKSTKSNKGMKKDQNAPKRPATVFFIFINAVR

A0A6J1FWU6 high mobility group B protein 3-like7.9e-0885Show/hide
Query:  MLKQKKFEMKSTKSNKGMKKDQNAPKRPATVFFIFINAVR
        MLKQKK EMKSTK NKGMKKDQNAPKRPATVFFIF+   R
Subjt:  MLKQKKFEMKSTKSNKGMKKDQNAPKRPATVFFIFINAVR

A0A6J1G5W3 high mobility group B protein 3-like1.5e-0677.5Show/hide
Query:  MLKQKKFEMKSTKSNKGMKKDQNAPKRPATVFFIFINAVR
        MLK++K EMKSTKSNK MKKDQNAPKRPAT FFIF+   R
Subjt:  MLKQKKFEMKSTKSNKGMKKDQNAPKRPATVFFIFINAVR

A0A6J1I4V5 high mobility group B protein 3-like1.5e-0677.5Show/hide
Query:  MLKQKKFEMKSTKSNKGMKKDQNAPKRPATVFFIFINAVR
        MLK++K EMKSTKSNK MKKDQNAPKRPAT FFIF+   R
Subjt:  MLKQKKFEMKSTKSNKGMKKDQNAPKRPATVFFIFINAVR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGAAGCAGAAAAAATTTGAGATGAAATCCACGAAAAGCAACAAAGGAATGAAGAAAGATCAAAATGCTCCAAAACGTCCGGCTACAGTCTTCTTCATTTTCATAAA
TGCTGTTCGGGCGCTGAAGCTGAAATTGAAATGCCAACAGAATCGCAGAAATCAACCTCTGAGGTCCATGATGACGCATAGCAGGAAGCTAGCTCCAGCTCTTAGGACTC
CACCGTCCCTTGGAGAAGGGAGTAACTTAAAGAAGCTGAGAAGGTGGACCTGGCTAAGGAAGAGCAATGGATTTGAAGAAGCCATGATTAAAAGCTCGCCAAAAACAAGA
GAAATCATAAGAAGGGTTTGGAGAAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTGAAGCAGAAAAAATTTGAGATGAAATCCACGAAAAGCAACAAAGGAATGAAGAAAGATCAAAATGCTCCAAAACGTCCGGCTACAGTCTTCTTCATTTTCATAAA
TGCTGTTCGGGCGCTGAAGCTGAAATTGAAATGCCAACAGAATCGCAGAAATCAACCTCTGAGGTCCATGATGACGCATAGCAGGAAGCTAGCTCCAGCTCTTAGGACTC
CACCGTCCCTTGGAGAAGGGAGTAACTTAAAGAAGCTGAGAAGGTGGACCTGGCTAAGGAAGAGCAATGGATTTGAAGAAGCCATGATTAAAAGCTCGCCAAAAACAAGA
GAAATCATAAGAAGGGTTTGGAGAAATTGA
Protein sequenceShow/hide protein sequence
MLKQKKFEMKSTKSNKGMKKDQNAPKRPATVFFIFINAVRALKLKLKCQQNRRNQPLRSMMTHSRKLAPALRTPPSLGEGSNLKKLRRWTWLRKSNGFEEAMIKSSPKTR
EIIRRVWRN