CuGenDBv2

Gene ID	CmaCh20G006800
Organism	Cucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description	F-box protein SNE-like
Genome location	Cma_Chr20:3117019..3117480
RNA-Seq Expression	CmaCh20G006800
Synteny	CmaCh20G006800
Gene Ontology terms	GO:0009937 - regulation of gibberellic acid mediated signaling pathway (biological process) GO:0019005 - SCF ubiquitin ligase complex (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001810 - F-box domain IPR036047 - F-box-like domain superfamily IPR044184 - F-box protein SNE

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6570941.1 F-box protein SNE, partial [Cucurbita argyrosperma subsp. sororia]

3.5e-79

96.18

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLG+ATCVCRLWCTIARSESVWEQVCFRHV SPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY

Query:  SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRL----GGGDASALSLMFLCNTVNV
        SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRL    GGGDASALSLMFLCNTVNV
Subjt:  SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRL----GGGDASALSLMFLCNTVNV

XP_022943904.1 F-box protein SNE-like [Cucurbita moschata]

3.2e-80

98.7

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLG+ATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY

Query:  SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRL-GGGDASALSLMFLCNTVNV
        SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRL GGGDASALSLMFLCNTVNV
Subjt:  SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRL-GGGDASALSLMFLCNTVNV

XP_022985800.1 F-box protein SNE-like [Cucurbita maxima]

9.8e-82

100

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY

Query:  SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRLGGGDASALSLMFLCNTVNV
        SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRLGGGDASALSLMFLCNTVNV
Subjt:  SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRLGGGDASALSLMFLCNTVNV

XP_023512130.1 F-box protein SNE-like [Cucurbita pepo subsp. pepo]

4.1e-80

98.08

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY

Query:  SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRL---GGGDASALSLMFLCNTVNV
        SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRL   GGGDASALSLMFLCNTVNV
Subjt:  SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRL---GGGDASALSLMFLCNTVNV

XP_038902594.1 F-box protein SNE [Benincasa hispida]

5.6e-77

95.42

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLP+SVKSVV ALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY

Query:  SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRLGGGDASALSLMFLCNTVNV
        SDL+RRVWTQ+EVQLSLSLFCVDYYERLTG+GR+ GGDASALSLMFLCNTVNV
Subjt:  SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRLGGGDASALSLMFLCNTVNV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAT5 F-box domain-containing protein

8.7e-76

93.46

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHV SPLP+SVK+VV ALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY

Query:  SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRLGGGDASALSLMFLCNTVNV
        SDL+RRVWTQ+EVQLSLSLFCVDYYERLTG+GR+ GG+ASALSLMFLCNTVNV
Subjt:  SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRLGGGDASALSLMFLCNTVNV

A0A1S4E4K7 F-box protein SNE

2.1e-74

92.16

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEK+RKFLIND+LDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHV SPLP+SVK+VV ALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY

Query:  SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRLGGGDASALSLMFLCNTVNV
        SDL+RRVWTQ+EVQLSLSLFCVDYYERLTG+GR+ GGDASALSLMFLCNTVNV
Subjt:  SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRLGGGDASALSLMFLCNTVNV

A0A5A7V4V6 F-box protein SNE

5.6e-75

92.81

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEK+RKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHV SPLP+SVK+VV ALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY

Query:  SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRLGGGDASALSLMFLCNTVNV
        SDL+RRVWTQ+EVQLSLSLFCVDYYERLTG+GR+ GGDASALSLMFLCNTVNV
Subjt:  SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRLGGGDASALSLMFLCNTVNV

A0A6J1FVJ9 F-box protein SNE-like

1.5e-80

98.7

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLG+ATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY

Query:  SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRL-GGGDASALSLMFLCNTVNV
        SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRL GGGDASALSLMFLCNTVNV
Subjt:  SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRL-GGGDASALSLMFLCNTVNV

A0A6J1JCA9 F-box protein SNE-like

4.8e-82

100

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY

Query:  SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRLGGGDASALSLMFLCNTVNV
        SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRLGGGDASALSLMFLCNTVNV
Subjt:  SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRLGGGDASALSLMFLCNTVNV

SwissProt top hits

e value

%identity

Alignment

Q7XAK4 F-box protein GID2

4.7e-10

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Query:  DILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSP--LPASVKSVVVALGGYKRLYMVSIRPVLSR-LGYSDLMRRVWT-----QNEVQ
        D++ E+L+R +  +L  A CV R W  +A  E +WE  C R   +       +++VV++LGG++RL+ V IRP+  R  G      R        +++VQ
Subjt:  DILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSP--LPASVKSVVVALGGYKRLYMVSIRPVLSR-LGYSDLMRRVWT-----QNEVQ

Query:  LSLSLFCVDYYERLTGNGRLGGGDA
        LSLSLF + +++ +    +  G D+
Subjt:  LSLSLFCVDYYERLTGNGRLGGGDA

Q9LUB6 F-box protein SNE

4.6e-34

50.65

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Query:  IPEPNEKRRK------FLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLG
        + + N KR++      F IND+ D+L+EIL+RLDG SL  A CVCRLW  +AR++S+WE++CFR V+     S++SVV ALGGY+ LY + IRPVL+R  
Subjt:  IPEPNEKRRK------FLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLG

Query:  YSDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRLGGGDASALSLMFLCNTVNV
           L + +WT++++QLSLSL+CV YYERL     L  GDA   SL+FL   VNV
Subjt:  YSDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRLGGGDASALSLMFLCNTVNV

Q9STX3 F-box protein GID2

1.5e-11

35.4

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Query:  NLD--ILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTS--PLPASVKSVVVALGGYKRLYMVSIRPVLSRLGYSDLMRRVWTQNEVQLS
        NLD  ++ E+LK +D  +L +++CV ++W   A+ E +WE +C RH T+       ++SVV+ALGG++RL+ + + P LS+       R  + ++E++L+
Subjt:  NLD--ILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTS--PLPASVKSVVVALGGYKRLYMVSIRPVLSRLGYSDLMRRVWTQNEVQLS

Query:  LSLFCVDYYERLT
        LSL  + YYE+++
Subjt:  LSLFCVDYYERLT

Arabidopsis top hits

e value

%identity

Alignment

AT4G24210.1 F-box family protein

1.0e-12

35.4

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Query:  NLD--ILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTS--PLPASVKSVVVALGGYKRLYMVSIRPVLSRLGYSDLMRRVWTQNEVQLS
        NLD  ++ E+LK +D  +L +++CV ++W   A+ E +WE +C RH T+       ++SVV+ALGG++RL+ + + P LS+       R  + ++E++L+
Subjt:  NLD--ILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTS--PLPASVKSVVVALGGYKRLYMVSIRPVLSRLGYSDLMRRVWTQNEVQLS

Query:  LSLFCVDYYERLT
        LSL  + YYE+++
Subjt:  LSLFCVDYYERLT

AT5G48170.1 F-box family protein

3.3e-35

50.65

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Query:  IPEPNEKRRK------FLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLG
        + + N KR++      F IND+ D+L+EIL+RLDG SL  A CVCRLW  +AR++S+WE++CFR V+     S++SVV ALGGY+ LY + IRPVL+R  
Subjt:  IPEPNEKRRK------FLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLG

Query:  YSDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRLGGGDASALSLMFLCNTVNV
           L + +WT++++QLSLSL+CV YYERL     L  GDA   SL+FL   VNV
Subjt:  YSDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRLGGGDASALSLMFLCNTVNV

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCAGAAGAATCACATACCAGAGCCGAACGAGAAGAGGCGGAAGTTCTTAATCAACGACAATCTCGACATTCTTATCGAAATCCTCAAGCGGCTGGACGGACCA
TCGCTCGGCGTCGCGACCTGCGTCTGTCGGCTCTGGTGCACCATCGCTCGAAGCGAATCGGTGTGGGAACAGGTCTGCTTCCGGCACGTAACATCGCCACTTCCG
GCGTCTGTGAAATCGGTGGTGGTCGCCTTGGGAGGGTACAAGCGGCTGTACATGGTGAGCATACGGCCGGTGCTGAGTCGACTCGGCTACTCAGACCTAATGAGG
CGAGTTTGGACTCAGAACGAAGTTCAACTTTCACTGTCTCTGTTCTGCGTGGATTACTACGAGCGGCTCACCGGAAATGGAAGACTCGGCGGCGGCGATGCGTCC
GCATTGTCACTCATGTTCCTCTGCAACACCGTCAACGTCTGA

mRNA sequence

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Protein sequence

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MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGYSDLMR
RVWTQNEVQLSLSLFCVDYYERLTGNGRLGGGDASALSLMFLCNTVNV

CmaCh20G006800 (gene) of Cucurbita maxima (Rimu) v1.1 genome