CuGenDBv2

Gene ID	CmaCh20G006840
Organism	Cucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description	5'-AMP-activated protein kinase beta-2 subunit protein, putative isoform 1
Genome location	Cma_Chr20:3131495..3132050
RNA-Seq Expression	CmaCh20G006840
Synteny	CmaCh20G006840
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008464165.1 PREDICTED: uncharacterized protein LOC103502113 [Cucumis melo]

1.9e-38

60.57

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Query:  MSKYQCHNIHIQ--------------ISYDIYMRSPNTNEQNISVAQH-------CFNNGRQQNP-SSFFAPLPCRFSLPW---PSASRFKLLANLGKRA
        MSKY CHNIHIQ              IS  +   S NT   N ++A               QQNP SSFF PLP  FS P      +SRFKLLANL    
Subjt:  MSKYQCHNIHIQ--------------ISYDIYMRSPNTNEQNISVAQH-------CFNNGRQQNP-SSFFAPLPCRFSLPW---PSASRFKLLANLGKRA

Query:  MLFSGDGDAEIKRGGKKTFITKEEEPEQYWQTAGEREEENPMMTPLPCIIIFGMSTPFVILAIAFANGWVKVPVR
            G GDAEIK+GGKK FITKEEEPEQYWQTAGERE ENPM TPLP IIIFGMSTPFVILAIAFANGWVKVPVR
Subjt:  MLFSGDGDAEIKRGGKKTFITKEEEPEQYWQTAGEREEENPMMTPLPCIIIFGMSTPFVILAIAFANGWVKVPVR

XP_022947537.1 uncharacterized protein LOC111451373 [Cucurbita moschata]

1.8e-36

76.52

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Query:  QQNPSSFFAPLPC-RFS----LPWPSASRFKLLANLGKRAMLFSGDGDAEIKRGGKKTFITKEEEPEQYWQTAGEREEENPMMTPLPCIIIFGMSTPFVI
        QQNPS FFAPLPC  FS     P P AS+FKLLAN        SG GDAE+K+GGKK FITKE+EPEQYWQTAGERE ENPM TPLP IIIFGMSTPFVI
Subjt:  QQNPSSFFAPLPC-RFS----LPWPSASRFKLLANLGKRAMLFSGDGDAEIKRGGKKTFITKEEEPEQYWQTAGEREEENPMMTPLPCIIIFGMSTPFVI

Query:  LAIAFANGWVKVPVR
        LAIAFANGWVKVPVR
Subjt:  LAIAFANGWVKVPVR

XP_022986197.1 uncharacterized protein LOC111484012 [Cucurbita maxima]

4.3e-83

100

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Query:  MAKMSKYQCHNIHIQISYDIYMRSPNTNEQNISVAQHCFNNGRQQNPSSFFAPLPCRFSLPWPSASRFKLLANLGKRAMLFSGDGDAEIKRGGKKTFITK
        MAKMSKYQCHNIHIQISYDIYMRSPNTNEQNISVAQHCFNNGRQQNPSSFFAPLPCRFSLPWPSASRFKLLANLGKRAMLFSGDGDAEIKRGGKKTFITK
Subjt:  MAKMSKYQCHNIHIQISYDIYMRSPNTNEQNISVAQHCFNNGRQQNPSSFFAPLPCRFSLPWPSASRFKLLANLGKRAMLFSGDGDAEIKRGGKKTFITK

Query:  EEEPEQYWQTAGEREEENPMMTPLPCIIIFGMSTPFVILAIAFANGWVKVPVR
        EEEPEQYWQTAGEREEENPMMTPLPCIIIFGMSTPFVILAIAFANGWVKVPVR
Subjt:  EEEPEQYWQTAGEREEENPMMTPLPCIIIFGMSTPFVILAIAFANGWVKVPVR

XP_023534591.1 uncharacterized protein LOC111796124 [Cucurbita pepo subsp. pepo]

1.8e-36

76.52

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Query:  QQNPSSFFAPLPC-RFS----LPWPSASRFKLLANLGKRAMLFSGDGDAEIKRGGKKTFITKEEEPEQYWQTAGEREEENPMMTPLPCIIIFGMSTPFVI
        QQNPS FFAPLPC  FS     P P AS+FKLLAN        SG GDAE+K+GGKK FITKE+EPEQYWQTAGERE ENPM TPLP IIIFGMSTPFVI
Subjt:  QQNPSSFFAPLPC-RFS----LPWPSASRFKLLANLGKRAMLFSGDGDAEIKRGGKKTFITKEEEPEQYWQTAGEREEENPMMTPLPCIIIFGMSTPFVI

Query:  LAIAFANGWVKVPVR
        LAIAFANGWVKVPVR
Subjt:  LAIAFANGWVKVPVR

XP_038902667.1 uncharacterized protein LOC120089303 [Benincasa hispida]

7.1e-38

79.46

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Query:  QQNPSSFFAPLPCRFSL--PWPSASRFKLLANLGKRAMLFSGDGDAEIKRGGKKTFITKEEEPEQYWQTAGEREEENPMMTPLPCIIIFGMSTPFVILAI
        QQ+PSSFF+PLPC FSL  P P  SRFKLLANL        G GDAEIK+G KK FITKEEEPEQYWQTAGERE ENPM TPLP IIIFGMSTPFVILAI
Subjt:  QQNPSSFFAPLPCRFSL--PWPSASRFKLLANLGKRAMLFSGDGDAEIKRGGKKTFITKEEEPEQYWQTAGEREEENPMMTPLPCIIIFGMSTPFVILAI

Query:  AFANGWVKVPVR
        AFANGWVKVPVR
Subjt:  AFANGWVKVPVR

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CKW7 uncharacterized protein LOC103502113

9.1e-39

60.57

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Query:  MSKYQCHNIHIQ--------------ISYDIYMRSPNTNEQNISVAQH-------CFNNGRQQNP-SSFFAPLPCRFSLPW---PSASRFKLLANLGKRA
        MSKY CHNIHIQ              IS  +   S NT   N ++A               QQNP SSFF PLP  FS P      +SRFKLLANL    
Subjt:  MSKYQCHNIHIQ--------------ISYDIYMRSPNTNEQNISVAQH-------CFNNGRQQNP-SSFFAPLPCRFSLPW---PSASRFKLLANLGKRA

Query:  MLFSGDGDAEIKRGGKKTFITKEEEPEQYWQTAGEREEENPMMTPLPCIIIFGMSTPFVILAIAFANGWVKVPVR
            G GDAEIK+GGKK FITKEEEPEQYWQTAGERE ENPM TPLP IIIFGMSTPFVILAIAFANGWVKVPVR
Subjt:  MLFSGDGDAEIKRGGKKTFITKEEEPEQYWQTAGEREEENPMMTPLPCIIIFGMSTPFVILAIAFANGWVKVPVR

A0A5D3CJG8 Uncharacterized protein

9.1e-39

60.57

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Query:  MSKYQCHNIHIQ--------------ISYDIYMRSPNTNEQNISVAQH-------CFNNGRQQNP-SSFFAPLPCRFSLPW---PSASRFKLLANLGKRA
        MSKY CHNIHIQ              IS  +   S NT   N ++A               QQNP SSFF PLP  FS P      +SRFKLLANL    
Subjt:  MSKYQCHNIHIQ--------------ISYDIYMRSPNTNEQNISVAQH-------CFNNGRQQNP-SSFFAPLPCRFSLPW---PSASRFKLLANLGKRA

Query:  MLFSGDGDAEIKRGGKKTFITKEEEPEQYWQTAGEREEENPMMTPLPCIIIFGMSTPFVILAIAFANGWVKVPVR
            G GDAEIK+GGKK FITKEEEPEQYWQTAGERE ENPM TPLP IIIFGMSTPFVILAIAFANGWVKVPVR
Subjt:  MLFSGDGDAEIKRGGKKTFITKEEEPEQYWQTAGEREEENPMMTPLPCIIIFGMSTPFVILAIAFANGWVKVPVR

A0A6J1G6R0 uncharacterized protein LOC111451373

8.5e-37

76.52

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Query:  QQNPSSFFAPLPC-RFS----LPWPSASRFKLLANLGKRAMLFSGDGDAEIKRGGKKTFITKEEEPEQYWQTAGEREEENPMMTPLPCIIIFGMSTPFVI
        QQNPS FFAPLPC  FS     P P AS+FKLLAN        SG GDAE+K+GGKK FITKE+EPEQYWQTAGERE ENPM TPLP IIIFGMSTPFVI
Subjt:  QQNPSSFFAPLPC-RFS----LPWPSASRFKLLANLGKRAMLFSGDGDAEIKRGGKKTFITKEEEPEQYWQTAGEREEENPMMTPLPCIIIFGMSTPFVI

Query:  LAIAFANGWVKVPVR
        LAIAFANGWVKVPVR
Subjt:  LAIAFANGWVKVPVR

A0A6J1I5Y3 uncharacterized protein LOC111469898

1.1e-36

77.88

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Query:  QQNPSSFFAPLPC-RFS--LPWPSASRFKLLANLGKRAMLFSGDGDAEIKRGGKKTFITKEEEPEQYWQTAGEREEENPMMTPLPCIIIFGMSTPFVILA
        QQNPS FF PLPC  FS   P P AS+FKLLAN        SG GDAE+K+GGKK FITKEEEPEQYWQTAGERE ENPM TPLP IIIFGMSTPFVILA
Subjt:  QQNPSSFFAPLPC-RFS--LPWPSASRFKLLANLGKRAMLFSGDGDAEIKRGGKKTFITKEEEPEQYWQTAGEREEENPMMTPLPCIIIFGMSTPFVILA

Query:  IAFANGWVKVPVR
        IAFANGWVKVPVR
Subjt:  IAFANGWVKVPVR

A0A6J1J6X3 uncharacterized protein LOC111484012

2.1e-83

100

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Query:  MAKMSKYQCHNIHIQISYDIYMRSPNTNEQNISVAQHCFNNGRQQNPSSFFAPLPCRFSLPWPSASRFKLLANLGKRAMLFSGDGDAEIKRGGKKTFITK
        MAKMSKYQCHNIHIQISYDIYMRSPNTNEQNISVAQHCFNNGRQQNPSSFFAPLPCRFSLPWPSASRFKLLANLGKRAMLFSGDGDAEIKRGGKKTFITK
Subjt:  MAKMSKYQCHNIHIQISYDIYMRSPNTNEQNISVAQHCFNNGRQQNPSSFFAPLPCRFSLPWPSASRFKLLANLGKRAMLFSGDGDAEIKRGGKKTFITK

Query:  EEEPEQYWQTAGEREEENPMMTPLPCIIIFGMSTPFVILAIAFANGWVKVPVR
        EEEPEQYWQTAGEREEENPMMTPLPCIIIFGMSTPFVILAIAFANGWVKVPVR
Subjt:  EEEPEQYWQTAGEREEENPMMTPLPCIIIFGMSTPFVILAIAFANGWVKVPVR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G05310.1 unknown protein

9.3e-28

58.33

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Query:  HCFNNGRQQNPSSF--FAPLPCRFSLPWP-SASRFKLLANLGKRAMLFSGDGDAEIKRGGKKTFITKEEEPEQYWQTAGEREEENPMMTPLPCIIIFGMS
        H  N+    + SS+     LP  F  P P    +FKL A L        G GD E+K   KK FITK+EEPEQYWQ+ GERE ENPM TPLP IIIFGMS
Subjt:  HCFNNGRQQNPSSF--FAPLPCRFSLPWP-SASRFKLLANLGKRAMLFSGDGDAEIKRGGKKTFITKEEEPEQYWQTAGEREEENPMMTPLPCIIIFGMS

Query:  TPFVILAIAFANGWVKVPVR
        TPFVILAIAFANGW+KVP+R
Subjt:  TPFVILAIAFANGWVKVPVR

AT4G13500.1 unknown protein

4.2e-28

62.62

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Query:  PSSFFAPLPCRFSLPWPSASRFKLLANLGKRAMLFSGDGDAEIKRGGKKTFITKEEEPEQYWQTAGEREEENPMMTPLPCIIIFGMSTPFVILAIAFANG
        P  F  P P  F         FKL A L        G GD E+K   KK FITKEEEPEQYWQ+ GERE ENPM TPLP IIIFGMSTPFVILAIAFANG
Subjt:  PSSFFAPLPCRFSLPWPSASRFKLLANLGKRAMLFSGDGDAEIKRGGKKTFITKEEEPEQYWQTAGEREEENPMMTPLPCIIIFGMSTPFVILAIAFANG

Query:  WVKVPVR
        W+KVP+R
Subjt:  WVKVPVR

Sequences

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CDS sequence

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ATGGGGCCATGGGGTTGTCTGTCATGTCCTGCAATGGCTAAGATGAGCAAATATCAGTGCCACAACATTCATATCCAAATCTCCTATGATATATATATGCGATCC
CCCAACACAAATGAGCAAAACATATCAGTAGCTCAACACTGCTTCAACAATGGCCGCCAACAAAACCCATCTTCCTTCTTCGCTCCTCTTCCCTGCCGCTTCTCC
TTGCCATGGCCAAGCGCTTCTCGCTTCAAACTTCTTGCAAATTTAGGTAAAAGGGCAATGCTATTTTCAGGTGATGGAGATGCAGAAATCAAGAGGGGAGGGAAG
AAAACGTTCATAACCAAAGAAGAAGAACCAGAGCAGTATTGGCAGACAGCAGGGGAAAGGGAAGAGGAGAATCCTATGATGACTCCTCTTCCTTGTATCATCATC
TTCGGCATGTCGACTCCGTTCGTGATCTTAGCCATAGCTTTTGCCAATGGCTGGGTTAAGGTTCCTGTGAGATGA

mRNA sequence

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Protein sequence

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MGPWGCLSCPAMAKMSKYQCHNIHIQISYDIYMRSPNTNEQNISVAQHCFNNGRQQNPSSFFAPLPCRFSLPWPSASRFKLLANLGKRAMLFSGDGDAEIKRGGK
KTFITKEEEPEQYWQTAGEREEENPMMTPLPCIIIFGMSTPFVILAIAFANGWVKVPVR

CmaCh20G006840 (gene) of Cucurbita maxima (Rimu) v1.1 genome