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CmaCh20G010110 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh20G010110
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description30S ribosomal protein S11
Genome locationCma_Chr20:6524428..6524961
RNA-Seq ExpressionCmaCh20G010110
SyntenyCmaCh20G010110
Gene Ontology termsGO:0000028 - ribosomal small subunit assembly (biological process)
GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0006412 - translation (biological process)
GO:0005763 - mitochondrial small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0048027 - mRNA 5'-UTR binding (molecular function)
GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3946461.1 hypothetical protein CMV_027276 [Castanea mollissima]7.0e-1564.86Show/hide
Query:  CTGSGNFLVLRWYLWIQRSKKRDYGVGSKKRDTICCSNRSRKCYSGSSRSRYATSRSHDKGSWSRKRCSVKSYS
        C   GNFLVLRWYLWIQ         G KKRDT+C +NRSRKCYS  S SRYATSRSHDK   S+ RCS+K YS
Subjt:  CTGSGNFLVLRWYLWIQRSKKRDYGVGSKKRDTICCSNRSRKCYSGSSRSRYATSRSHDKGSWSRKRCSVKSYS

KAG9139838.1 hypothetical protein Leryth_026844 [Lithospermum erythrorhizon]6.8e-1066.13Show/hide
Query:  YLWIQRSKKRDYGVGSKKRDTICCSNRSRKCYSGSSRSRYATSRSHDKGSWSRKRCSVKSYS
        Y WIQ         G KK D +CCSNRS KCYS SSRSRYATSRSHDK  WSRKR S+ SYS
Subjt:  YLWIQRSKKRDYGVGSKKRDTICCSNRSRKCYSGSSRSRYATSRSHDKGSWSRKRCSVKSYS

KYP36697.1 hypothetical protein KK1_042161, partial [Cajanus cajan]5.0e-1362.16Show/hide
Query:  CTGSGNFLVLRWYLWIQRSKKRDYGVGSKKRDTICCSNRSRKCYSGSSRSRYATSRSHDKGSWSRKRCSVKSYS
        CT   NFLVLRWYLWIQ         G  K D  C SN +RK YS S+RSR ATSRSHDK SWSRKRC +K YS
Subjt:  CTGSGNFLVLRWYLWIQRSKKRDYGVGSKKRDTICCSNRSRKCYSGSSRSRYATSRSHDKGSWSRKRCSVKSYS

QUX33651.1 30S ribosomal protein S11 [Handeliodendron bodinieri]2.6e-0960.53Show/hide
Query:  CTGSGNFLVLRWYLWIQRSKKRDYGVGSKKRDTICCSNRSRKCYSGSSRSRYATSRSHDK--GSWSRKRCSVKSYS
        CTGSG FLV R YL I+         G KKR T+CCSNR RK Y  S+ SRYATSRS  K  GS SRKRCS+ SYS
Subjt:  CTGSGNFLVLRWYLWIQRSKKRDYGVGSKKRDTICCSNRSRKCYSGSSRSRYATSRSHDK--GSWSRKRCSVKSYS

YP_009429749.1 30S ribosomal protein S11 [Aesculus wangii]6.8e-1059.21Show/hide
Query:  CTGSGNFLVLRWYLWIQRSKKRDYGVGSKKRDTICCSNRSRKCYSGSSRSRYATSRSHDK--GSWSRKRCSVKSYS
        CTGSG FLV RWYL I+           KKRDT+CCSNR RK Y  S+ SRY TSRS  K   S SRKRCS+ SYS
Subjt:  CTGSGNFLVLRWYLWIQRSKKRDYGVGSKKRDTICCSNRSRKCYSGSSRSRYATSRSHDK--GSWSRKRCSVKSYS

TrEMBL top hitse value%identityAlignment
A0A151R2A2 Uncharacterized protein (Fragment)2.4e-1362.16Show/hide
Query:  CTGSGNFLVLRWYLWIQRSKKRDYGVGSKKRDTICCSNRSRKCYSGSSRSRYATSRSHDKGSWSRKRCSVKSYS
        CT   NFLVLRWYLWIQ         G  K D  C SN +RK YS S+RSR ATSRSHDK SWSRKRC +K YS
Subjt:  CTGSGNFLVLRWYLWIQRSKKRDYGVGSKKRDTICCSNRSRKCYSGSSRSRYATSRSHDKGSWSRKRCSVKSYS

A0A1R3KVA2 Ribosomal protein S111.2e-0977.08Show/hide
Query:  GSKKRDTICCSNRSRKCYSGSSRSRYATSRSHDKGSWSRKRCSVKSYS
        G KKRD+ CCSNRS KCYS  SR RYATSRS+DKGSWSRKR S  SYS
Subjt:  GSKKRDTICCSNRSRKCYSGSSRSRYATSRSHDKGSWSRKRCSVKSYS

A0A286S222 30S ribosomal protein S113.3e-1059.21Show/hide
Query:  CTGSGNFLVLRWYLWIQRSKKRDYGVGSKKRDTICCSNRSRKCYSGSSRSRYATSRSHDK--GSWSRKRCSVKSYS
        CTGSG FLV RWYL I+           KKRDT+CCSNR RK Y  S+ SRY TSRS  K   S SRKRCS+ SYS
Subjt:  CTGSGNFLVLRWYLWIQRSKKRDYGVGSKKRDTICCSNRSRKCYSGSSRSRYATSRSHDK--GSWSRKRCSVKSYS

A0A6M4B8N9 Ribosomal protein S111.4e-0857.89Show/hide
Query:  CTGSGNFLVLRWYLWIQRSKKRDYGVGSKKRDTICCSNRSRKCYSGSSRSRYATSRSHDK--GSWSRKRCSVKSYS
        CTGSG FLV R YL I+           KKRDT+CCSNR RK Y  S+ SRY TSRS  K   S SRKRCS+ SYS
Subjt:  CTGSGNFLVLRWYLWIQRSKKRDYGVGSKKRDTICCSNRSRKCYSGSSRSRYATSRSHDK--GSWSRKRCSVKSYS

A0A7S8FII3 30S ribosomal protein S111.2e-0960.53Show/hide
Query:  CTGSGNFLVLRWYLWIQRSKKRDYGVGSKKRDTICCSNRSRKCYSGSSRSRYATSRSHDK--GSWSRKRCSVKSYS
        CTGSG FLV R YL I+         G KKR T+CCSNR RK Y  S+ SRYATSRS  K  GS SRKRCS+ SYS
Subjt:  CTGSGNFLVLRWYLWIQRSKKRDYGVGSKKRDTICCSNRSRKCYSGSSRSRYATSRSHDK--GSWSRKRCSVKSYS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACGGGGTCGGATGTACGGGGTCGGGTAATTTCTTGGTCCTCCGCTGGTACTTGTGGATTCAAAGGTCCAAGAAGAGGGACTACGGGGTCGGGTCCAAGAAG
AGGGACACCATTTGTTGCTCAAACCGCAGCAGGAAATGCTATTCGGGCAGTAGCAGATCAAGGTATGCAACGAGCAGAAGTCATGATAAAGGGTCTTGGTCTCGG
AAGAGATGCAGCGTTAAGAGCTATTCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTACGGGGTCGGATGTACGGGGTCGGGTAATTTCTTGGTCCTCCGCTGGTACTTGTGGATTCAAAGGTCCAAGAAGAGGGACTACGGGGTCGGGTCCAAGAAG
AGGGACACCATTTGTTGCTCAAACCGCAGCAGGAAATGCTATTCGGGCAGTAGCAGATCAAGGTATGCAACGAGCAGAAGTCATGATAAAGGGTCTTGGTCTCGG
AAGAGATGCAGCGTTAAGAGCTATTCGTAG
Protein sequenceShow/hide protein sequence
MYGVGCTGSGNFLVLRWYLWIQRSKKRDYGVGSKKRDTICCSNRSRKCYSGSSRSRYATSRSHDKGSWSRKRCSVKSYS