CuGenDBv2

Gene ID	CmaCh20G010310
Organism	Cucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Genome location	Cma_Chr20:7525317..7528411
RNA-Seq Expression	CmaCh20G010310
Synteny	CmaCh20G010310
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
InterPro domains	IPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase IPR043502 - DNA/RNA polymerase superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

CAN68148.1 hypothetical protein VITISV_035665 [Vitis vinifera]

7.2e-54

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Query:  ALERNHTWSLIPLPPDHKAIGCHWVYKIKHNSDGSIERYKARLVAKGYTQVEGVDYKETFSPTAELTTLCCLLTIVAARKWFAHQLNVQNAFLHGNLDEE
        ALERN+TW ++PLPP HK IGC WVYKIK++SDG+IERYKARLVAKGYTQV G+DY+ETFSPTA+LTTL CLLT+ A+R W+ HQL+V NAFLHGNL EE
Subjt:  ALERNHTWSLIPLPPDHKAIGCHWVYKIKHNSDGSIERYKARLVAKGYTQVEGVDYKETFSPTAELTTLCCLLTIVAARKWFAHQLNVQNAFLHGNLDEE

Query:  VYMSLP--------------------------------------LGYTQS-VDYSLFTKSKGTSFTAALIYVDDILLTVNDLKEIQHLKT
        VYM+ P                                       GY QS  DYSLFTKS+G  FTA LIYVDDILLT NDL EI+ LKT
Subjt:  VYMSLP--------------------------------------LGYTQS-VDYSLFTKSKGTSFTAALIYVDDILLTVNDLKEIQHLKT

KAD4180157.1 hypothetical protein E3N88_28748 [Mikania micrantha]

7.2e-54

61.9

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Query:  ALERNHTWSLIPLPPDHKAIGCHWVYKIKHNSDGSIERYKARLVAKGYTQVEGVDYKETFSPTAELTTLCCLLTIVAARKWFAHQLNVQNAFLHGNLDEE
        AL+ N+TWSL+PLP  HK IGC WVYKIK+NSDG+IERYKARLVAKGYTQVEG+DYKETFSPTA+LTTL CLLT+ AAR WF HQL+VQNAFLHG+L E 
Subjt:  ALERNHTWSLIPLPPDHKAIGCHWVYKIKHNSDGSIERYKARLVAKGYTQVEGVDYKETFSPTAELTTLCCLLTIVAARKWFAHQLNVQNAFLHGNLDEE

Query:  VYMSLP--------------------------------------LGYTQS-VDYSLFTKSKGTSFTAALIYVDDILLTVNDLKEIQHLK
        VYM+ P                                       GYTQS  DYSLFTK++G SFTA LIYVDDILLT NDL EI+ LK
Subjt:  VYMSLP--------------------------------------LGYTQS-VDYSLFTKSKGTSFTAALIYVDDILLTVNDLKEIQHLK

RVW14960.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]

1.1e-54

69.62

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Query:  ALERNHTWSLIPLPPDHKAIGCHWVYKIKHNSDGSIERYKARLVAKGYTQVEGVDYKETFSPTAELTTLCCLLTIVAARKWFAHQLNVQNAFLHGNLDEE
        ALERN+TW ++PLPP HK IGC WVYKIK++ DG+IE YKARLVAKGYTQV G+DY+ETFSPT +LTTL CLLT+ A+R W+ HQL+V NAFLHGNL EE
Subjt:  ALERNHTWSLIPLPPDHKAIGCHWVYKIKHNSDGSIERYKARLVAKGYTQVEGVDYKETFSPTAELTTLCCLLTIVAARKWFAHQLNVQNAFLHGNLDEE

Query:  VYMSLP------LGYTQS-VDYSLFTKSKGTSFTAALIYVDDILLTVNDLKEIQHLKT
        VYM+ P       GY QS  DYSLFTKS+G  FTA LIYVDDILL  NDL EI+ LKT
Subjt:  VYMSLP------LGYTQS-VDYSLFTKSKGTSFTAALIYVDDILLTVNDLKEIQHLKT

RVW70215.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]

7.2e-54

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Query:  ALERNHTWSLIPLPPDHKAIGCHWVYKIKHNSDGSIERYKARLVAKGYTQVEGVDYKETFSPTAELTTLCCLLTIVAARKWFAHQLNVQNAFLHGNLDEE
        ALERN+TW ++PLPP HK IGC WVYKIK++SDG+IERYKARLVAKGYTQV G+DY+ETFSPTA+LTTL CLLT+ A+R W+ HQL+V NAFLHGNL EE
Subjt:  ALERNHTWSLIPLPPDHKAIGCHWVYKIKHNSDGSIERYKARLVAKGYTQVEGVDYKETFSPTAELTTLCCLLTIVAARKWFAHQLNVQNAFLHGNLDEE

Query:  VYMSLP--------------------------------------LGYTQS-VDYSLFTKSKGTSFTAALIYVDDILLTVNDLKEIQHLKT
        VYM+ P                                       GY QS  DYSLFTKS+G  FTA LIYVDDILLT NDL EI+ LKT
Subjt:  VYMSLP--------------------------------------LGYTQS-VDYSLFTKSKGTSFTAALIYVDDILLTVNDLKEIQHLKT

RZB68903.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Glycine soja]

3.2e-54

70.13

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Query:  ALERNHTWSLIPLPPDHKAIGCHWVYKIKHNSDGSIERYKARLVAKGYTQVEGVDYKETFSPTAELTTLCCLLTIVAARKWFAHQLNVQNAFLHGNLDEE
        ALE+N+TWSL+PLP  HK IGC WVYKIK+ SDG+IERYKARLVAKGYTQVEG+DY+ETFSPTA++TTL CLLT+ AAR WF HQL+VQ+AFLHG+L E 
Subjt:  ALERNHTWSLIPLPPDHKAIGCHWVYKIKHNSDGSIERYKARLVAKGYTQVEGVDYKETFSPTAELTTLCCLLTIVAARKWFAHQLNVQNAFLHGNLDEE

Query:  VYMSLPLGYTQS----VDYSLFTKSKGTSFTAALIYVDDILLTVNDLKEIQHLK
        VYM  P G  +      DYSLF KS+GTS T  LIYVDDILLT NDL+E++ LK
Subjt:  VYMSLPLGYTQS----VDYSLFTKSKGTSFTAALIYVDDILLTVNDLKEIQHLK

TrEMBL top hits

e value

%identity

Alignment

A0A438BVT5 Retrovirus-related Pol polyprotein from transposon RE1

5.4e-55

69.62

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Query:  ALERNHTWSLIPLPPDHKAIGCHWVYKIKHNSDGSIERYKARLVAKGYTQVEGVDYKETFSPTAELTTLCCLLTIVAARKWFAHQLNVQNAFLHGNLDEE
        ALERN+TW ++PLPP HK IGC WVYKIK++ DG+IE YKARLVAKGYTQV G+DY+ETFSPT +LTTL CLLT+ A+R W+ HQL+V NAFLHGNL EE
Subjt:  ALERNHTWSLIPLPPDHKAIGCHWVYKIKHNSDGSIERYKARLVAKGYTQVEGVDYKETFSPTAELTTLCCLLTIVAARKWFAHQLNVQNAFLHGNLDEE

Query:  VYMSLP------LGYTQS-VDYSLFTKSKGTSFTAALIYVDDILLTVNDLKEIQHLKT
        VYM+ P       GY QS  DYSLFTKS+G  FTA LIYVDDILL  NDL EI+ LKT
Subjt:  VYMSLP------LGYTQS-VDYSLFTKSKGTSFTAALIYVDDILLTVNDLKEIQHLKT

A0A438GDC6 Retrovirus-related Pol polyprotein from transposon RE1

3.5e-54

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Query:  ALERNHTWSLIPLPPDHKAIGCHWVYKIKHNSDGSIERYKARLVAKGYTQVEGVDYKETFSPTAELTTLCCLLTIVAARKWFAHQLNVQNAFLHGNLDEE
        ALERN+TW ++PLPP HK IGC WVYKIK++SDG+IERYKARLVAKGYTQV G+DY+ETFSPTA+LTTL CLLT+ A+R W+ HQL+V NAFLHGNL EE
Subjt:  ALERNHTWSLIPLPPDHKAIGCHWVYKIKHNSDGSIERYKARLVAKGYTQVEGVDYKETFSPTAELTTLCCLLTIVAARKWFAHQLNVQNAFLHGNLDEE

Query:  VYMSLP--------------------------------------LGYTQS-VDYSLFTKSKGTSFTAALIYVDDILLTVNDLKEIQHLKT
        VYM+ P                                       GY QS  DYSLFTKS+G  FTA LIYVDDILLT NDL EI+ LKT
Subjt:  VYMSLP--------------------------------------LGYTQS-VDYSLFTKSKGTSFTAALIYVDDILLTVNDLKEIQHLKT

A0A445H5L3 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.6e-54

70.13

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Query:  ALERNHTWSLIPLPPDHKAIGCHWVYKIKHNSDGSIERYKARLVAKGYTQVEGVDYKETFSPTAELTTLCCLLTIVAARKWFAHQLNVQNAFLHGNLDEE
        ALE+N+TWSL+PLP  HK IGC WVYKIK+ SDG+IERYKARLVAKGYTQVEG+DY+ETFSPTA++TTL CLLT+ AAR WF HQL+VQ+AFLHG+L E 
Subjt:  ALERNHTWSLIPLPPDHKAIGCHWVYKIKHNSDGSIERYKARLVAKGYTQVEGVDYKETFSPTAELTTLCCLLTIVAARKWFAHQLNVQNAFLHGNLDEE

Query:  VYMSLPLGYTQS----VDYSLFTKSKGTSFTAALIYVDDILLTVNDLKEIQHLK
        VYM  P G  +      DYSLF KS+GTS T  LIYVDDILLT NDL+E++ LK
Subjt:  VYMSLPLGYTQS----VDYSLFTKSKGTSFTAALIYVDDILLTVNDLKEIQHLK

A0A5N6N1H3 Reverse transcriptase Ty1/copia-type domain-containing protein

3.5e-54

61.9

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Query:  ALERNHTWSLIPLPPDHKAIGCHWVYKIKHNSDGSIERYKARLVAKGYTQVEGVDYKETFSPTAELTTLCCLLTIVAARKWFAHQLNVQNAFLHGNLDEE
        AL+ N+TWSL+PLP  HK IGC WVYKIK+NSDG+IERYKARLVAKGYTQVEG+DYKETFSPTA+LTTL CLLT+ AAR WF HQL+VQNAFLHG+L E 
Subjt:  ALERNHTWSLIPLPPDHKAIGCHWVYKIKHNSDGSIERYKARLVAKGYTQVEGVDYKETFSPTAELTTLCCLLTIVAARKWFAHQLNVQNAFLHGNLDEE

Query:  VYMSLP--------------------------------------LGYTQS-VDYSLFTKSKGTSFTAALIYVDDILLTVNDLKEIQHLK
        VYM+ P                                       GYTQS  DYSLFTK++G SFTA LIYVDDILLT NDL EI+ LK
Subjt:  VYMSLP--------------------------------------LGYTQS-VDYSLFTKSKGTSFTAALIYVDDILLTVNDLKEIQHLK

A5BNR5 Integrase catalytic domain-containing protein

3.5e-54

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Query:  ALERNHTWSLIPLPPDHKAIGCHWVYKIKHNSDGSIERYKARLVAKGYTQVEGVDYKETFSPTAELTTLCCLLTIVAARKWFAHQLNVQNAFLHGNLDEE
        ALERN+TW ++PLPP HK IGC WVYKIK++SDG+IERYKARLVAKGYTQV G+DY+ETFSPTA+LTTL CLLT+ A+R W+ HQL+V NAFLHGNL EE
Subjt:  ALERNHTWSLIPLPPDHKAIGCHWVYKIKHNSDGSIERYKARLVAKGYTQVEGVDYKETFSPTAELTTLCCLLTIVAARKWFAHQLNVQNAFLHGNLDEE

Query:  VYMSLP--------------------------------------LGYTQS-VDYSLFTKSKGTSFTAALIYVDDILLTVNDLKEIQHLKT
        VYM+ P                                       GY QS  DYSLFTKS+G  FTA LIYVDDILLT NDL EI+ LKT
Subjt:  VYMSLP--------------------------------------LGYTQS-VDYSLFTKSKGTSFTAALIYVDDILLTVNDLKEIQHLKT

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

6.4e-21

30.11

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Query:  NHTWSLIPLPPDHKAIGCHWVYKIKHNSDGSIERYKARLVAKGYTQVEGVDYKETFSPTAELTTLCCLLTIVAARKWFAHQLNVQNAFLHGNLDEEVYMS
        N+TW++   P +   +   WV+ +K+N  G+  RYKARLVA+G+TQ   +DY+ETF+P A +++   +L++V       HQ++V+ AFL+G L EE+YM 
Subjt:  NHTWSLIPLPPDHKAIGCHWVYKIKHNSDGSIERYKARLVAKGYTQVEGVDYKETFSPTAELTTLCCLLTIVAARKWFAHQLNVQNAFLHGNLDEEVYMS

Query:  LPLGYT--------------------------------------QSVDYSLFTKSKG--TSFTAALIYVDDILLTVNDLKEIQHLK
        LP G +                                       SVD  ++   KG        L+YVDD+++   D+  + + K
Subjt:  LPLGYT--------------------------------------QSVDYSLFTKSKG--TSFTAALIYVDDILLTVNDLKEIQHLK

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

6.8e-23

42.2

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Query:  ALERNHTWSLIPLPPDHKAIGCHWVYKIKHNSDGSIERYKARLVAKGYTQVEGVDYKETFSPTAELTTLCCLLTIVAARKWFAHQLNVQNAFLHGNLDEE
        +L++N T+ L+ LP   + + C WV+K+K + D  + RYKARLV KG+ Q +G+D+ E FSP  ++T++  +L++ A+      QL+V+ AFLHG+L+EE
Subjt:  ALERNHTWSLIPLPPDHKAIGCHWVYKIKHNSDGSIERYKARLVAKGYTQVEGVDYKETFSPTAELTTLCCLLTIVAARKWFAHQLNVQNAFLHGNLDEE

Query:  VYMSLPLGY
        +YM  P G+
Subjt:  VYMSLPLGY

P92520 Uncharacterized mitochondrial protein AtMg00820

2.4e-15

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Query:  ALERNHTWSLIPLPPDHKAIGCHWVYKIKHNSDGSIERYKARLVAKGYTQVEGVDYKETFSPTAELTTLCCLLTI
        AL RN TW L+P P +   +GC WV+K K +SDG+++R KARLVAKG+ Q EG+ + ET+SP     T+  +L +
Subjt:  ALERNHTWSLIPLPPDHKAIGCHWVYKIKHNSDGSIERYKARLVAKGYTQVEGVDYKETFSPTAELTTLCCLLTI

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

1.1e-31

42.46

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Query:  NHTWSLIPLPPDHKAI-GCHWVYKIKHNSDGSIERYKARLVAKGYTQVEGVDYKETFSPTAELTTLCCLLTIVAARKWFAHQLNVQNAFLHGNLDEEVYM
        NHTW L+P PP H  I GC W++  K+NSDGS+ RYKARLVAKGY Q  G+DY ETFSP  + T++  +L +   R W   QL+V NAFL G L ++VYM
Subjt:  NHTWSLIPLPPDHKAI-GCHWVYKIKHNSDGSIERYKARLVAKGYTQVEGVDYKETFSPTAELTTLCCLLTIVAARKWFAHQLNVQNAFLHGNLDEEVYM

Query:  SLP---------------------------------------LGYTQSV-DYSLFTKSKGTSFTAALIYVDDILLTVND
        S P                                       +G+  SV D SLF   +G S    L+YVDDIL+T ND
Subjt:  SLP---------------------------------------LGYTQSV-DYSLFTKSKGTSFTAALIYVDDILLTVND

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

6.8e-31

41.08

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Query:  NHTWSLIPLPPDHKAI-GCHWVYKIKHNSDGSIERYKARLVAKGYTQVEGVDYKETFSPTAELTTLCCLLTIVAARKWFAHQLNVQNAFLHGNLDEEVYM
        NHTW L+P PP    I GC W++  K NSDGS+ RYKARLVAKGY Q  G+DY ETFSP  + T++  +L +   R W   QL+V NAFL G L +EVYM
Subjt:  NHTWSLIPLPPDHKAI-GCHWVYKIKHNSDGSIERYKARLVAKGYTQVEGVDYKETFSPTAELTTLCCLLTIVAARKWFAHQLNVQNAFLHGNLDEEVYM

Query:  SLP---------------------------------------LGYTQSV-DYSLFTKSKGTSFTAALIYVDDILLTVNDLKEIQH
        S P                                       +G+  S+ D SLF   +G S    L+YVDDIL+T ND   ++H
Subjt:  SLP---------------------------------------LGYTQSV-DYSLFTKSKGTSFTAALIYVDDILLTVNDLKEIQH

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

2.6e-38

42.05

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Query:  ALERNHTWSLIPLPPDHKAIGCHWVYKIKHNSDGSIERYKARLVAKGYTQVEGVDYKETFSPTAELTTLCCLLTIVAARKWFAHQLNVQNAFLHGNLDEE
        A+E  HTW +  LPP+ K IGC WVYKIK+NSDG+IERYKARLVAKGYTQ EG+D+ ETFSP  +LT++  +L I A   +  HQL++ NAFL+G+LDEE
Subjt:  ALERNHTWSLIPLPPDHKAIGCHWVYKIKHNSDGSIERYKARLVAKGYTQVEGVDYKETFSPTAELTTLCCLLTIVAARKWFAHQLNVQNAFLHGNLDEE

Query:  VYMSLPLGYT--------------------------------------------QSVDYSLFTKSKGTSFTAALIYVDDILLTVNDLKEIQHLKT
        +YM LP GY                                                D++ F K   T F   L+YVDDI++  N+   +  LK+
Subjt:  VYMSLPLGYT--------------------------------------------QSVDYSLFTKSKGTSFTAALIYVDDILLTVNDLKEIQHLKT

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)

1.7e-16

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Query:  ALERNHTWSLIPLPPDHKAIGCHWVYKIKHNSDGSIERYKARLVAKGYTQVEGVDYKETFSPTAELTTLCCLLTI
        AL RN TW L+P P +   +GC WV+K K +SDG+++R KARLVAKG+ Q EG+ + ET+SP     T+  +L +
Subjt:  ALERNHTWSLIPLPPDHKAIGCHWVYKIKHNSDGSIERYKARLVAKGYTQVEGVDYKETFSPTAELTTLCCLLTI

Sequences

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CDS sequence

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ATGGCACAATTGAAGAACCGTCTCAAAATGCAAATTCAACCGAATTTGAACTCTGGAATTAATGCAACAGACTTGGCTACGGGAAAGATGATTGGCTTGGGTAAA
CAATTCAGGGGTCTCTATCATATTTCATCTTCAATCAAATATTCAGCTCACCAAGTATCTCAGCCATCTGATTTGCGGCATTTACGCCTAGCTTTAGAACGTAAT
CATACTTGGTCTCTCATTCCTCTACCACCTGACCATAAAGCTATTGGTTGTCATTGGGTGTACAAGATTAAACACAACTCTGATGGTTCTATTGAACGTTATAAA
GCTCGACTAGTAGCAAAGGGATACACTCAAGTTGAAGGTGTTGATTACAAAGAGACATTTTCTCCTACAGCAGAACTTACTACACTTTGTTGCTTACTCACTATT
GTCGCTGCTCGAAAATGGTTCGCTCATCAGTTGAATGTTCAAAATGCCTTTCTCCACGGTAATCTAGACGAGGAAGTCTATATGTCTTTACCACTAGGCTACACT
CAGTCAGTAGATTACTCTTTATTTACTAAGAGTAAAGGTACTTCTTTCACTGCAGCTCTTATCTATGTTGATGATATTTTATTGACAGTCAATGATCTCAAAGAA
ATTCAACATCTCAAGACTAGTTAA

mRNA sequence

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Protein sequence

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MAQLKNRLKMQIQPNLNSGINATDLATGKMIGLGKQFRGLYHISSSIKYSAHQVSQPSDLRHLRLALERNHTWSLIPLPPDHKAIGCHWVYKIKHNSDGSIERYK
ARLVAKGYTQVEGVDYKETFSPTAELTTLCCLLTIVAARKWFAHQLNVQNAFLHGNLDEEVYMSLPLGYTQSVDYSLFTKSKGTSFTAALIYVDDILLTVNDLKE
IQHLKTS

CmaCh20G010310 (gene) of Cucurbita maxima (Rimu) v1.1 genome