; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmaCh20G010360 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh20G010360
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Descriptionbiquitin domain-containing protein 7SL RNA1-like
Genome locationCma_Chr20:7618382..7618963
RNA-Seq ExpressionCmaCh20G010360
SyntenyCmaCh20G010360
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593520.1 hypothetical protein SDJN03_12996, partial [Cucurbita argyrosperma subsp. sororia]2.2e-4671.75Show/hide
Query:  MATSSKTTATSKSTKSSNILAFNSLFESQKNSQSQLQPQIDPKHSIGRLKQRIHEINSVGPINGMMLQPNASHADLQDQRSLRDSEMSENSEVEVCLRSS
        MATSSKTTATS S+KSS+ILAFNS                        LK RIHEINSVGPING++ QPNA  ADLQDQ SLRDSEM EN EVEVCLRSS
Subjt:  MATSSKTTATSKSTKSSNILAFNSLFESQKNSQSQLQPQIDPKHSIGRLKQRIHEINSVGPINGMMLQPNASHADLQDQRSLRDSEMSENSEVEVCLRSS

Query:  PTVWTAVPEMTTSSPQPSTTTTTTTMTTAAVTVATSGSSKNKLKVMVQLKFKDSKIPKEVNPTNNVGKLKKELQKLQ
        P V T  P MTT  PQPSTTTTTT  TTA VTVATSGSSKNKLKVMVQLKF +SKIP EVNPT+NVGKLKKELQKLQ
Subjt:  PTVWTAVPEMTTSSPQPSTTTTTTTMTTAAVTVATSGSSKNKLKVMVQLKFKDSKIPKEVNPTNNVGKLKKELQKLQ

KAG6603761.1 Ubiquitin domain-containing protein 7SL RNA1, partial [Cucurbita argyrosperma subsp. sororia]3.3e-5883.23Show/hide
Query:  ESQKNSQSQLQPQIDPKHSIGRLKQRIHEINSVGPINGMMLQPN-ASHADLQDQRSLRDSEMSENSEVEVCLRSSPTVWTAVPEMTT-SSPQPSTTTTTT
        ESQ NSQS  QPQIDP HSIGRLKQRIH+INSVGPING+MLQ N AS  +LQDQRSLRDSEMSENSEVEVCLR SPTV TA P MTT   PQPSTTTTTT
Subjt:  ESQKNSQSQLQPQIDPKHSIGRLKQRIHEINSVGPINGMMLQPN-ASHADLQDQRSLRDSEMSENSEVEVCLRSSPTVWTAVPEMTT-SSPQPSTTTTTT

Query:  TMTTAAVTVATSGSSKNKLKVMVQLKFKDSKIPKEVNPTNNVGKLKKELQKLQQRLHFHLPPEGFFF
        T+  AA TVATSGSSKNKLKVMVQ KF +SKIP EVNPT+NVG+LKKELQKLQQRLHFHLPPEGFFF
Subjt:  TMTTAAVTVATSGSSKNKLKVMVQLKFKDSKIPKEVNPTNNVGKLKKELQKLQQRLHFHLPPEGFFF

XP_022950206.1 biquitin domain-containing protein 7SL RNA1-like [Cucurbita moschata]1.6e-4972.89Show/hide
Query:  ESQKNSQSQLQPQIDPKHSIGRLKQRIHEINSVGPINGMMLQPN-ASHADLQDQRSLRDSEMSENSEVEVCLRSSPTVWTAVPEMTTSSPQPSTTTTTTT
        ESQ NSQS  QPQIDP HSIGRLKQRIH+INSVGPING+MLQ N AS  +LQDQRSLRDSEMSENSEVEVCLR SPTV TA P MTT             
Subjt:  ESQKNSQSQLQPQIDPKHSIGRLKQRIHEINSVGPINGMMLQPN-ASHADLQDQRSLRDSEMSENSEVEVCLRSSPTVWTAVPEMTTSSPQPSTTTTTTT

Query:  MTTAAVTVATSGSSKNKLKVMVQLKFKDSKIPKEVNPTNNVGKLKKELQKLQQRLHFHLPPEGFFF
                   GSSKNKLKVMVQ KF +SKIP EVNPT+NVG+LKKELQKLQQRLHFHLPPEGFFF
Subjt:  MTTAAVTVATSGSSKNKLKVMVQLKFKDSKIPKEVNPTNNVGKLKKELQKLQQRLHFHLPPEGFFF

XP_022978395.1 biquitin domain-containing protein 7SL RNA1-like [Cucurbita maxima]2.7e-5274.25Show/hide
Query:  ESQKNSQSQL--QPQIDPKHSIGRLKQRIHEINSVGPINGMMLQPNASHADLQDQRSLRDSEMSENSEVEVCLRSSPTVWTAVPEMTTSSPQPSTTTTTT
        ESQ NSQSQ   QPQIDP HSIGRLKQRIH+INSVGPING+MLQ NAS  +LQDQRSLRDSEMSENSEVEVCLR SPTV TA   MTT  PQP       
Subjt:  ESQKNSQSQL--QPQIDPKHSIGRLKQRIHEINSVGPINGMMLQPNASHADLQDQRSLRDSEMSENSEVEVCLRSSPTVWTAVPEMTTSSPQPSTTTTTT

Query:  TMTTAAVTVATSGSSKNKLKVMVQLKFKDSKIPKEVNPTNNVGKLKKELQKLQQRLHFHLPPEGFFF
                    GSSKNKLKVMVQ KF +SKIP EVNPT+NVG+LKKELQKLQQRLHFHLPPEGFFF
Subjt:  TMTTAAVTVATSGSSKNKLKVMVQLKFKDSKIPKEVNPTNNVGKLKKELQKLQQRLHFHLPPEGFFF

XP_023543067.1 biquitin domain-containing protein 7SL RNA1-like [Cucurbita pepo subsp. pepo]3.0e-5173.05Show/hide
Query:  ESQKNSQS--QLQPQIDPKHSIGRLKQRIHEINSVGPINGMMLQPNASHADLQDQRSLRDSEMSENSEVEVCLRSSPTVWTAVPEMTTSSPQPSTTTTTT
        ESQ NSQS  Q QPQIDP HSIGRLKQRIH+INSVGPING+MLQ NAS  +LQDQRSLRDSEMSENSEVEVCLR SPTV TA P MTT            
Subjt:  ESQKNSQS--QLQPQIDPKHSIGRLKQRIHEINSVGPINGMMLQPNASHADLQDQRSLRDSEMSENSEVEVCLRSSPTVWTAVPEMTTSSPQPSTTTTTT

Query:  TMTTAAVTVATSGSSKNKLKVMVQLKFKDSKIPKEVNPTNNVGKLKKELQKLQQRLHFHLPPEGFFF
                    GSSKNKLKVMVQ KF +SKIP EVNPT+NVG+LKKELQKLQQRLHFHLPPEGFFF
Subjt:  TMTTAAVTVATSGSSKNKLKVMVQLKFKDSKIPKEVNPTNNVGKLKKELQKLQQRLHFHLPPEGFFF

TrEMBL top hitse value%identityAlignment
A0A6J1EW13 biquitin domain-containing protein 7SL RNA1-like2.4e-2282.93Show/hide
Query:  MTTSSPQPSTTTTTTTMTTAAVTVATSGSSKNKLKVMVQLKFKDSKIPKEVNPTNNVGKLKKELQKLQQRLHFHLPPEGFFF
        MTT   QPSTTTTTT  T AAVTVATSGSSKNKLKVMVQLKF++SKI  EV+PT+NVGKLKKEL KLQQRLHFHLPPE FFF
Subjt:  MTTSSPQPSTTTTTTTMTTAAVTVATSGSSKNKLKVMVQLKFKDSKIPKEVNPTNNVGKLKKELQKLQQRLHFHLPPEGFFF

A0A6J1GE65 biquitin domain-containing protein 7SL RNA1-like7.9e-5072.89Show/hide
Query:  ESQKNSQSQLQPQIDPKHSIGRLKQRIHEINSVGPINGMMLQPN-ASHADLQDQRSLRDSEMSENSEVEVCLRSSPTVWTAVPEMTTSSPQPSTTTTTTT
        ESQ NSQS  QPQIDP HSIGRLKQRIH+INSVGPING+MLQ N AS  +LQDQRSLRDSEMSENSEVEVCLR SPTV TA P MTT             
Subjt:  ESQKNSQSQLQPQIDPKHSIGRLKQRIHEINSVGPINGMMLQPN-ASHADLQDQRSLRDSEMSENSEVEVCLRSSPTVWTAVPEMTTSSPQPSTTTTTTT

Query:  MTTAAVTVATSGSSKNKLKVMVQLKFKDSKIPKEVNPTNNVGKLKKELQKLQQRLHFHLPPEGFFF
                   GSSKNKLKVMVQ KF +SKIP EVNPT+NVG+LKKELQKLQQRLHFHLPPEGFFF
Subjt:  MTTAAVTVATSGSSKNKLKVMVQLKFKDSKIPKEVNPTNNVGKLKKELQKLQQRLHFHLPPEGFFF

A0A6J1I9Y4 ubiquitin domain-containing protein 7SL RNA2-like1.7e-2383.54Show/hide
Query:  SSPQPSTTTTTTTMTTAAVTVATSGSSKNKLKVMVQLKFKDSKIPKEVNPTNNVGKLKKELQKLQQRLHFHLPPEGFFF
        ++P PSTTTTT T TTAAV VATSGSSKNKLKV+VQ KF +SKIP EV+PT+NVGKLKKELQKLQQRLHFHLPPEGFFF
Subjt:  SSPQPSTTTTTTTMTTAAVTVATSGSSKNKLKVMVQLKFKDSKIPKEVNPTNNVGKLKKELQKLQQRLHFHLPPEGFFF

A0A6J1IDL7 uncharacterized protein LOC1114721839.7e-4079.37Show/hide
Query:  MLQPNASHADLQDQRSLRDSEMSENSEVEVCLRSSPTVWTAVPEMTTSSPQPSTTTTTTTMTTAAVTVATSGSSKNKLKVMVQLKFKDSKIPKEVNPTNN
        MLQPN S AD QDQRSLRDSEMSEN EVEVCL  SPTV T+ P+MT SSP P+TT      TTAAV VATSGSSKNKLKVMVQ KF +SKIP EVNPTNN
Subjt:  MLQPNASHADLQDQRSLRDSEMSENSEVEVCLRSSPTVWTAVPEMTTSSPQPSTTTTTTTMTTAAVTVATSGSSKNKLKVMVQLKFKDSKIPKEVNPTNN

Query:  VGKLKKELQKLQQRLHFHLPPEGFFF
        VG+LKKELQKLQQRLHFH PPEGFFF
Subjt:  VGKLKKELQKLQQRLHFHLPPEGFFF

A0A6J1IPZ4 biquitin domain-containing protein 7SL RNA1-like1.3e-5274.25Show/hide
Query:  ESQKNSQSQL--QPQIDPKHSIGRLKQRIHEINSVGPINGMMLQPNASHADLQDQRSLRDSEMSENSEVEVCLRSSPTVWTAVPEMTTSSPQPSTTTTTT
        ESQ NSQSQ   QPQIDP HSIGRLKQRIH+INSVGPING+MLQ NAS  +LQDQRSLRDSEMSENSEVEVCLR SPTV TA   MTT  PQP       
Subjt:  ESQKNSQSQL--QPQIDPKHSIGRLKQRIHEINSVGPINGMMLQPNASHADLQDQRSLRDSEMSENSEVEVCLRSSPTVWTAVPEMTTSSPQPSTTTTTT

Query:  TMTTAAVTVATSGSSKNKLKVMVQLKFKDSKIPKEVNPTNNVGKLKKELQKLQQRLHFHLPPEGFFF
                    GSSKNKLKVMVQ KF +SKIP EVNPT+NVG+LKKELQKLQQRLHFHLPPEGFFF
Subjt:  TMTTAAVTVATSGSSKNKLKVMVQLKFKDSKIPKEVNPTNNVGKLKKELQKLQQRLHFHLPPEGFFF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G03370.1 Ubiquitin family protein2.9e-0450Show/hide
Query:  KLKVMVQLKFKDSKIPKEVNPTNNVGKLKKELQKLQQRLHFHLPPEGFFF
        K+ VMVQ   +  +I  EVN  +NV  L+KEL K+Q+R   +LP EGFFF
Subjt:  KLKVMVQLKFKDSKIPKEVNPTNNVGKLKKELQKLQQRLHFHLPPEGFFF

AT4G05230.1 Ubiquitin-like superfamily protein1.0e-0428.07Show/hide
Query:  QKNSQSQLQPQIDPKHSIGRLKQRIHEINSVGPIN--GMMLQPNASHADLQDQRSLRDSEMSENSEVEVCLRSSPTVWTAVPEMTTSS-PQPSTTTTTTT
        +  S S  + ++    ++  +KQ+I +   + P++   ++ Q N     LQD   +    +  +S +++ + S       +    T   PQ ++T  T+ 
Subjt:  QKNSQSQLQPQIDPKHSIGRLKQRIHEINSVGPIN--GMMLQPNASHADLQDQRSLRDSEMSENSEVEVCLRSSPTVWTAVPEMTTSS-PQPSTTTTTTT

Query:  ---MTTAAVTVATSGSSKN--KLKVMVQLKFKDSKIPKEVNPTNNVGKLKKELQKLQQRLHFHLPPEGFFF
            +T  + ++ + ++ N  KL+VMV  K    KIP +VN  +NVG+L+KEL K+QQR    LP EG+FF
Subjt:  ---MTTAAVTVATSGSSKN--KLKVMVQLKFKDSKIPKEVNPTNNVGKLKKELQKLQQRLHFHLPPEGFFF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCACGTCCTCCAAGACGACCGCGACGTCGAAATCTACGAAATCCTCCAACATTCTCGCATTCAACTCCCTTTTCGAATCCCAAAAAAATTCCCAATCCCAATTGCA
ACCCCAAATCGACCCAAAACATTCAATCGGGCGCCTCAAACAGAGGATCCACGAAATCAACTCTGTGGGCCCCATCAACGGGATGATGCTCCAACCCAATGCCTCCCATG
CCGACTTACAGGATCAACGTTCCTTGCGTGACAGCGAGATGTCGGAGAATTCTGAGGTTGAGGTTTGTTTGCGATCGTCGCCTACGGTTTGGACCGCTGTGCCCGAGATG
ACAACATCGTCGCCACAGCCGTCGACGACGACAACAACGACAACGATGACGACGGCAGCTGTGACGGTGGCAACGAGTGGGTCGTCAAAGAACAAGTTGAAAGTAATGGT
GCAACTGAAATTTAAGGACTCAAAGATACCAAAGGAAGTGAACCCAACGAATAACGTGGGGAAATTGAAGAAAGAGTTGCAAAAGCTACAGCAGAGACTGCATTTTCATC
TGCCACCAGAGGGTTTTTTTTTTTATTTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCACGTCCTCCAAGACGACCGCGACGTCGAAATCTACGAAATCCTCCAACATTCTCGCATTCAACTCCCTTTTCGAATCCCAAAAAAATTCCCAATCCCAATTGCA
ACCCCAAATCGACCCAAAACATTCAATCGGGCGCCTCAAACAGAGGATCCACGAAATCAACTCTGTGGGCCCCATCAACGGGATGATGCTCCAACCCAATGCCTCCCATG
CCGACTTACAGGATCAACGTTCCTTGCGTGACAGCGAGATGTCGGAGAATTCTGAGGTTGAGGTTTGTTTGCGATCGTCGCCTACGGTTTGGACCGCTGTGCCCGAGATG
ACAACATCGTCGCCACAGCCGTCGACGACGACAACAACGACAACGATGACGACGGCAGCTGTGACGGTGGCAACGAGTGGGTCGTCAAAGAACAAGTTGAAAGTAATGGT
GCAACTGAAATTTAAGGACTCAAAGATACCAAAGGAAGTGAACCCAACGAATAACGTGGGGAAATTGAAGAAAGAGTTGCAAAAGCTACAGCAGAGACTGCATTTTCATC
TGCCACCAGAGGGTTTTTTTTTTTATTTATGA
Protein sequenceShow/hide protein sequence
MATSSKTTATSKSTKSSNILAFNSLFESQKNSQSQLQPQIDPKHSIGRLKQRIHEINSVGPINGMMLQPNASHADLQDQRSLRDSEMSENSEVEVCLRSSPTVWTAVPEM
TTSSPQPSTTTTTTTMTTAAVTVATSGSSKNKLKVMVQLKFKDSKIPKEVNPTNNVGKLKKELQKLQQRLHFHLPPEGFFFYL