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CmaCh20G010580 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh20G010580
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionTetratricopeptide-like helical
Genome locationCma_Chr20:7963511..7967097
RNA-Seq ExpressionCmaCh20G010580
SyntenyCmaCh20G010580
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571344.1 hypothetical protein SDJN03_30259, partial [Cucurbita argyrosperma subsp. sororia]1.6e-9687.72Show/hide
Query:  MPMASPTATPLIPHLLFPSSST--NPNPNKPSKPISFPRLPTKRLLLFSLPIATALLLPIPSNPIQPSSCDALESFDPVSRSEREASAVISRRVSEAVEL
        MPMASPTA PLIPHLLFPSSST  NPNPNKPSKPIS PRLPT+RLLLFSLPIATALLLPIPSNPIQPSSCDALE FDPVSRSEREASA ISRRVSEAVEL
Subjt:  MPMASPTATPLIPHLLFPSSST--NPNPNKPSKPISFPRLPTKRLLLFSLPIATALLLPIPSNPIQPSSCDALESFDPVSRSEREASAVISRRVSEAVEL

Query:  LDKGRELQALGDFDQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGHREEAIAEMEDVSISLKGY-----------PEVHAALAAALYVDKHAPLLAE
        LDKGRELQALGDF+QALLYFTQVIDKYKDFAFSDYARVGRAFALYEIG REEAIAEMEDVSISLKGY           PEVHAALAAALYVDKHAPLLAE
Subjt:  LDKGRELQALGDFDQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGHREEAIAEMEDVSISLKGY-----------PEVHAALAAALYVDKHAPLLAE

Query:  NQFTIATLLDPHYVDIS----YVKETKH
        NQFTIATLLDPHYVDIS    + KE  H
Subjt:  NQFTIATLLDPHYVDIS----YVKETKH

XP_004147349.3 uncharacterized protein LOC101214268 [Cucumis sativus]4.7e-9685.04Show/hide
Query:  MASPTATPLIPHLLFPSSST---NPNPN---KPSKPISFPR---LPTKRLLLFSLPIATALLLPIPSNPIQPSSCDALESFDPVSRSEREASAVISRRVS
        M S TA  LIPHLL PSSS+   NP+ N   K SKP+SFP    LPT+RLLLFSLPIATA LLPIP NPIQPSS  A+ESFDPVSRSE++ASA ISRRVS
Subjt:  MASPTATPLIPHLLFPSSST---NPNPN---KPSKPISFPR---LPTKRLLLFSLPIATALLLPIPSNPIQPSSCDALESFDPVSRSEREASAVISRRVS

Query:  EAVELLDKGRELQALGDFDQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGHREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIA
        EAVELLDKGRELQALGDF+QALLYFTQVIDKYKDFAFSDYARVGRA ALYEIG REEAIAEMEDVSISLKGYPEVHAALAAALYVDKHA LLAENQFTIA
Subjt:  EAVELLDKGRELQALGDFDQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGHREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIA

Query:  TLLDPHYVDISYVKETKHWPPSLISSLKNFLTLS
        TLLDPHYVDISYVKETKHWPPSLISSL++FLTLS
Subjt:  TLLDPHYVDISYVKETKHWPPSLISSLKNFLTLS

XP_022932010.1 uncharacterized protein LOC111438340 [Cucurbita moschata]5.5e-11396.07Show/hide
Query:  MPMASPTATPLIPHLLFPSSST--NPNPNKPSKPISFPRLPTKRLLLFSLPIATALLLPIPSNPIQPSSCDALESFDPVSRSEREASAVISRRVSEAVEL
        MPMASPTA PLIPHLLFPSSST  NPNPNKPSKPIS PRLPT+RLLLFSLPIATALLLPIPSNPIQPSSCDALE FDPVSRSEREASA ISRRVSEAVEL
Subjt:  MPMASPTATPLIPHLLFPSSST--NPNPNKPSKPISFPRLPTKRLLLFSLPIATALLLPIPSNPIQPSSCDALESFDPVSRSEREASAVISRRVSEAVEL

Query:  LDKGRELQALGDFDQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGHREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDP
        LDKGRELQALGDF+QALLYFTQVIDKYKDFAFSDYARVGRAFALYEIG REEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDP
Subjt:  LDKGRELQALGDFDQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGHREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDP

Query:  HYVDISYVKETKHWPPSLISSLKNFLTLS
        HYVDISYVKETKHWPPSLISSLKNFLTLS
Subjt:  HYVDISYVKETKHWPPSLISSLKNFLTLS

XP_022971626.1 uncharacterized protein LOC111470308 [Cucurbita maxima]3.9e-119100Show/hide
Query:  MPMASPTATPLIPHLLFPSSSTNPNPNKPSKPISFPRLPTKRLLLFSLPIATALLLPIPSNPIQPSSCDALESFDPVSRSEREASAVISRRVSEAVELLD
        MPMASPTATPLIPHLLFPSSSTNPNPNKPSKPISFPRLPTKRLLLFSLPIATALLLPIPSNPIQPSSCDALESFDPVSRSEREASAVISRRVSEAVELLD
Subjt:  MPMASPTATPLIPHLLFPSSSTNPNPNKPSKPISFPRLPTKRLLLFSLPIATALLLPIPSNPIQPSSCDALESFDPVSRSEREASAVISRRVSEAVELLD

Query:  KGRELQALGDFDQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGHREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDPHY
        KGRELQALGDFDQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGHREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDPHY
Subjt:  KGRELQALGDFDQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGHREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDPHY

Query:  VDISYVKETKHWPPSLISSLKNFLTLS
        VDISYVKETKHWPPSLISSLKNFLTLS
Subjt:  VDISYVKETKHWPPSLISSLKNFLTLS

XP_023512389.1 uncharacterized protein LOC111777156 [Cucurbita pepo subsp. pepo]1.1e-11396.51Show/hide
Query:  MPMASPTATPLIPHLLFPSSST--NPNPNKPSKPISFPRLPTKRLLLFSLPIATALLLPIPSNPIQPSSCDALESFDPVSRSEREASAVISRRVSEAVEL
        MPMASPTA PLIPHLLFPSSST  NPNPNKPSKPISFPRLPT+RLLLFSLPIATALLLPIPSNPIQPSSC ALESFDPVSRSEREASA ISRRVSEAVEL
Subjt:  MPMASPTATPLIPHLLFPSSST--NPNPNKPSKPISFPRLPTKRLLLFSLPIATALLLPIPSNPIQPSSCDALESFDPVSRSEREASAVISRRVSEAVEL

Query:  LDKGRELQALGDFDQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGHREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDP
        LDKGRELQALGDFD ALLYFTQVIDKYKDFAFSDYARVGRAFALYEIG REEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDP
Subjt:  LDKGRELQALGDFDQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGHREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDP

Query:  HYVDISYVKETKHWPPSLISSLKNFLTLS
        HYVDISYVKETKHWPPSLISSLKNFLTLS
Subjt:  HYVDISYVKETKHWPPSLISSLKNFLTLS

TrEMBL top hitse value%identityAlignment
A0A0A0LN32 Uncharacterized protein2.3e-9685.04Show/hide
Query:  MASPTATPLIPHLLFPSSST---NPNPN---KPSKPISFPR---LPTKRLLLFSLPIATALLLPIPSNPIQPSSCDALESFDPVSRSEREASAVISRRVS
        M S TA  LIPHLL PSSS+   NP+ N   K SKP+SFP    LPT+RLLLFSLPIATA LLPIP NPIQPSS  A+ESFDPVSRSE++ASA ISRRVS
Subjt:  MASPTATPLIPHLLFPSSST---NPNPN---KPSKPISFPR---LPTKRLLLFSLPIATALLLPIPSNPIQPSSCDALESFDPVSRSEREASAVISRRVS

Query:  EAVELLDKGRELQALGDFDQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGHREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIA
        EAVELLDKGRELQALGDF+QALLYFTQVIDKYKDFAFSDYARVGRA ALYEIG REEAIAEMEDVSISLKGYPEVHAALAAALYVDKHA LLAENQFTIA
Subjt:  EAVELLDKGRELQALGDFDQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGHREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIA

Query:  TLLDPHYVDISYVKETKHWPPSLISSLKNFLTLS
        TLLDPHYVDISYVKETKHWPPSLISSL++FLTLS
Subjt:  TLLDPHYVDISYVKETKHWPPSLISSLKNFLTLS

A0A5D3BSI6 Tetratricopeptide-like helical9.8e-8482.95Show/hide
Query:  MASPTATPLIPHLLFPSSST---------NPNPN---KPSKPISFPR---LPTKRLLLFSLPIATALLLPIPSNPIQPSSCDALESFDPVSRSEREASAV
        M S TA  LIPHLLFPSSS+         NP+ N   K SKP+SFP    LPT+RLLLFSLPIATA LLPIP+NPIQPSS  A+ESFDPVSRSE+EASA 
Subjt:  MASPTATPLIPHLLFPSSST---------NPNPN---KPSKPISFPR---LPTKRLLLFSLPIATALLLPIPSNPIQPSSCDALESFDPVSRSEREASAV

Query:  ISRRVSEAVELLDKGRELQALGDFDQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGHREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAE
        ISRRVSEAVELLDKGRELQALGDF+QALLYFTQVIDKYKDFAFSDYARVGRA ALYEIG REEAIAEMEDVSISLKGYPEVHAALAAALYVDKHA LLAE
Subjt:  ISRRVSEAVELLDKGRELQALGDFDQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGHREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAE

Query:  NQFTIATLLDPHYVDIS
        NQFTIATLLDPHYVDIS
Subjt:  NQFTIATLLDPHYVDIS

A0A6J1DRA5 uncharacterized protein LOC1110235341.5e-9584.51Show/hide
Query:  MASPTATPLIPHLLFPSSSTNPNPN-KPSKPISFPRLPTKRLLLFSLPIATALLLPIPSNPIQPSSCDALESFDPVSRSEREASAVISRRVSEAVELLDK
        M S TA  LIPHL FPSSS++ NPN KPSKP++  RLP++RL LFSLP ATA +LPIP+NPI PSSC ALE F+PV+ SER+ASA +SRRVSEAVELLDK
Subjt:  MASPTATPLIPHLLFPSSSTNPNPN-KPSKPISFPRLPTKRLLLFSLPIATALLLPIPSNPIQPSSCDALESFDPVSRSEREASAVISRRVSEAVELLDK

Query:  GRELQALGDFDQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGHREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDPHYV
        GRELQALGDF++ALLYFTQVIDKYKDFAFSDYARVGRA ALYEIG REEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDPHYV
Subjt:  GRELQALGDFDQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGHREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDPHYV

Query:  DISYVKETKHWPPSLISSLKNFLTLS
        DISYVKETKHWPPSLISSL++FLTLS
Subjt:  DISYVKETKHWPPSLISSLKNFLTLS

A0A6J1F108 uncharacterized protein LOC1114383402.7e-11396.07Show/hide
Query:  MPMASPTATPLIPHLLFPSSST--NPNPNKPSKPISFPRLPTKRLLLFSLPIATALLLPIPSNPIQPSSCDALESFDPVSRSEREASAVISRRVSEAVEL
        MPMASPTA PLIPHLLFPSSST  NPNPNKPSKPIS PRLPT+RLLLFSLPIATALLLPIPSNPIQPSSCDALE FDPVSRSEREASA ISRRVSEAVEL
Subjt:  MPMASPTATPLIPHLLFPSSST--NPNPNKPSKPISFPRLPTKRLLLFSLPIATALLLPIPSNPIQPSSCDALESFDPVSRSEREASAVISRRVSEAVEL

Query:  LDKGRELQALGDFDQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGHREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDP
        LDKGRELQALGDF+QALLYFTQVIDKYKDFAFSDYARVGRAFALYEIG REEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDP
Subjt:  LDKGRELQALGDFDQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGHREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDP

Query:  HYVDISYVKETKHWPPSLISSLKNFLTLS
        HYVDISYVKETKHWPPSLISSLKNFLTLS
Subjt:  HYVDISYVKETKHWPPSLISSLKNFLTLS

A0A6J1I3T3 uncharacterized protein LOC1114703081.9e-119100Show/hide
Query:  MPMASPTATPLIPHLLFPSSSTNPNPNKPSKPISFPRLPTKRLLLFSLPIATALLLPIPSNPIQPSSCDALESFDPVSRSEREASAVISRRVSEAVELLD
        MPMASPTATPLIPHLLFPSSSTNPNPNKPSKPISFPRLPTKRLLLFSLPIATALLLPIPSNPIQPSSCDALESFDPVSRSEREASAVISRRVSEAVELLD
Subjt:  MPMASPTATPLIPHLLFPSSSTNPNPNKPSKPISFPRLPTKRLLLFSLPIATALLLPIPSNPIQPSSCDALESFDPVSRSEREASAVISRRVSEAVELLD

Query:  KGRELQALGDFDQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGHREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDPHY
        KGRELQALGDFDQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGHREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDPHY
Subjt:  KGRELQALGDFDQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGHREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDPHY

Query:  VDISYVKETKHWPPSLISSLKNFLTLS
        VDISYVKETKHWPPSLISSLKNFLTLS
Subjt:  VDISYVKETKHWPPSLISSLKNFLTLS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCATGGCATCTCCAACTGCAACGCCACTGATTCCCCATCTCCTCTTTCCCTCGTCTTCCACAAACCCTAACCCCAACAAACCTTCAAAACCCATCTCATTTCCTCG
ATTACCCACCAAACGTTTGCTTCTCTTCTCCCTTCCCATCGCCACTGCCCTTCTCCTCCCAATTCCGAGCAATCCGATTCAGCCCAGTTCTTGCGACGCGCTGGAAAGCT
TTGACCCTGTCAGCCGTTCTGAGCGAGAAGCGAGTGCTGTTATTTCCCGAAGAGTATCTGAAGCTGTGGAGCTTCTTGATAAAGGCAGGGAGTTGCAAGCTCTTGGTGAT
TTCGATCAAGCTCTTCTCTACTTCACTCAGGTAATTGATAAATATAAAGATTTTGCCTTCTCGGACTATGCTCGAGTAGGCCGAGCATTCGCCCTGTATGAAATTGGTCA
CCGAGAAGAAGCAATTGCAGAGATGGAGGATGTTTCCATATCACTGAAGGGATATCCAGAAGTGCATGCGGCACTGGCTGCAGCCTTATACGTGGATAAACATGCTCCAT
TGCTGGCTGAAAACCAATTCACCATAGCAACTTTGCTTGATCCTCATTATGTGGATATCTCGTATGTGAAAGAAACAAAGCACTGGCCTCCGAGTTTGATTAGTTCTTTG
AAAAATTTCTTAACACTTTCTTAG
mRNA sequenceShow/hide mRNA sequence
AACGATATCTCAATGGTTAAGGCAATCTATATTGAAAATATGAAAATAAGGCTGAAGTTTTGCCACCAAAATCAACAGCCATGCCCATGGCATCTCCAACTGCAACGCCA
CTGATTCCCCATCTCCTCTTTCCCTCGTCTTCCACAAACCCTAACCCCAACAAACCTTCAAAACCCATCTCATTTCCTCGATTACCCACCAAACGTTTGCTTCTCTTCTC
CCTTCCCATCGCCACTGCCCTTCTCCTCCCAATTCCGAGCAATCCGATTCAGCCCAGTTCTTGCGACGCGCTGGAAAGCTTTGACCCTGTCAGCCGTTCTGAGCGAGAAG
CGAGTGCTGTTATTTCCCGAAGAGTATCTGAAGCTGTGGAGCTTCTTGATAAAGGCAGGGAGTTGCAAGCTCTTGGTGATTTCGATCAAGCTCTTCTCTACTTCACTCAG
GTAATTGATAAATATAAAGATTTTGCCTTCTCGGACTATGCTCGAGTAGGCCGAGCATTCGCCCTGTATGAAATTGGTCACCGAGAAGAAGCAATTGCAGAGATGGAGGA
TGTTTCCATATCACTGAAGGGATATCCAGAAGTGCATGCGGCACTGGCTGCAGCCTTATACGTGGATAAACATGCTCCATTGCTGGCTGAAAACCAATTCACCATAGCAA
CTTTGCTTGATCCTCATTATGTGGATATCTCGTATGTGAAAGAAACAAAGCACTGGCCTCCGAGTTTGATTAGTTCTTTGAAAAATTTCTTAACACTTTCTTAGACATTT
GTAATAATGTATAATACATACAATACAGCTTCTGTCATAAAAAAAAACTGAATTCCTTGTTTTCTAAGTGTACAAAATGTATCATAGTCTATAGATAACTCTACAAACCC
ATGCAAGTAGTAGAAAAATAGTTTATTTCAAATCTCTTATCCCTTCAAATTGTAATATGAATTGATTTTCTTTCATTTGATCTTGCTCATTGCTTATCC
Protein sequenceShow/hide protein sequence
MPMASPTATPLIPHLLFPSSSTNPNPNKPSKPISFPRLPTKRLLLFSLPIATALLLPIPSNPIQPSSCDALESFDPVSRSEREASAVISRRVSEAVELLDKGRELQALGD
FDQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGHREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDPHYVDISYVKETKHWPPSLISSL
KNFLTLS